FFCP PHASE1:Hg19::chrX:17755658..17755695,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:17755658..17755695,+
|short_description=p2@SCML1
|description=CAGE_peak_2_at_SCML1_5end
|association_with_transcript=0bp_to_ENST00000427362_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6322 | |EntrezGene=6322 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10580 | |HGNC=10580 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000427362_5end | |||
|cluster_id=chrX:17755658..17755695,+ | |||
|description=CAGE_peak_2_at_SCML1_5end | |||
|id=chrX:17755658..17755695,+ | |||
|ontology_enrichment_celltype=CL:0000557!8.81e-16!71;CL:0002009!1.09e-15!65;CL:0002194!1.33e-14!63;CL:0000576!1.33e-14!63;CL:0000040!1.33e-14!63;CL:0000559!1.33e-14!63;CL:0000766!4.13e-14!76;CL:0000839!6.32e-14!70;CL:0000860!6.88e-14!45;CL:0002057!4.13e-13!42;CL:0002620!4.75e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.25e-12;33!CL:0002057;4.25e-12;33!CL:0000473;1.19e-11;39!CL:0000234;1.19e-11;39!CL:0000576;1.94e-08;48!CL:0002620;3.59e-07;23!CL:0000766;4.71e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.30e-15,67;CL:0002009,1.93e-15,61;CL:0000473,2.35e-15,48;CL:0000234,2.35e-15,48;CL:0002194,2.45e-14,59;CL:0000576,2.45e-14,59;CL:0000040,2.45e-14,59;CL:0000559,2.45e-14,59;CL:0000839,8.30e-14,66;CL:0000766,8.61e-14,72;CL:0000860,2.83e-13,42;CL:0002057,2.83e-13,42;CL:0002620,3.96e-07,23 | |||
|ontology_enrichment_development_v019=CL:0002057;1.53e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!2.12e-24!511;UBERON:0004765!1.50e-16!101;UBERON:0001434!1.50e-16!101;UBERON:0000467!2.29e-16!625;UBERON:0000480!5.35e-16!626;UBERON:0000468!1.22e-15!659;UBERON:0001474!5.55e-14!86;UBERON:0002371!1.23e-13!80;UBERON:0000926!1.18e-12!448;UBERON:0004120!1.18e-12!448;UBERON:0006603!1.18e-12!448;UBERON:0002405!1.19e-12!115;UBERON:0002204!2.02e-11!167;UBERON:0000923!1.29e-10!604;UBERON:0005291!1.29e-10!604;UBERON:0006598!1.29e-10!604;UBERON:0002532!1.29e-10!604;UBERON:0002050!1.62e-10!605;UBERON:0005423!1.62e-10!605;UBERON:0000922!1.57e-09!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001434,7.26e-16,100;UBERON:0001474,9.01e-14,82;UBERON:0002371,1.91e-13,76;UBERON:0004765,6.35e-13,90;UBERON:0002204,1.13e-10,167;UBERON:0002405,2.15e-10,93;UBERON:0002050,2.64e-08,564;UBERON:0000923,3.40e-08,560;UBERON:0010316,3.40e-08,560;UBERON:0005291,3.40e-08,560;UBERON:0006598,3.40e-08,560;UBERON:0010317,3.40e-08,560;UBERON:0002532,3.40e-08,560;UBERON:0005423,2.42e-07,581;UBERON:0000922,7.71e-07,592;UBERON:0003102,9.25e-07,99 | |||
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| ||
|short_description=p2@SCML1 | |||
}} | }} |
Latest revision as of 06:55, 20 September 2015
Short description: | p2@SCML1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCML1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000427362_5end |
EntrezGene: | SCML1 |
HGNC: | 10580 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.30e-15 | 67 |
macrophage dendritic cell progenitor | 1.93e-15 | 61 |
defensive cell | 2.35e-15 | 48 |
phagocyte | 2.35e-15 | 48 |
monopoietic cell | 2.45e-14 | 59 |
monocyte | 2.45e-14 | 59 |
monoblast | 2.45e-14 | 59 |
promonocyte | 2.45e-14 | 59 |
myeloid lineage restricted progenitor cell | 8.30e-14 | 66 |
myeloid leukocyte | 8.61e-14 | 72 |
classical monocyte | 2.83e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.83e-13 | 42 |
skin fibroblast | 3.96e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
skeletal system | 7.26e-16 | 100 |
bone element | 9.01e-14 | 82 |
bone marrow | 1.91e-13 | 76 |
skeletal element | 6.35e-13 | 90 |
musculoskeletal system | 1.13e-10 | 167 |
immune system | 2.15e-10 | 93 |
embryonic structure | 2.64e-08 | 564 |
germ layer | 3.40e-08 | 560 |
germ layer / neural crest | 3.40e-08 | 560 |
embryonic tissue | 3.40e-08 | 560 |
presumptive structure | 3.40e-08 | 560 |
germ layer / neural crest derived structure | 3.40e-08 | 560 |
epiblast (generic) | 3.40e-08 | 560 |
developing anatomical structure | 2.42e-07 | 581 |
embryo | 7.71e-07 | 592 |
surface structure | 9.25e-07 | 99 |