FFCP PHASE1:Hg19::chr8:39771339..39771352,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3620 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6059 | |||
|TSSclassifier=strong | |||
|UniProt=P14902 | |||
|association_with_transcript=11bp_to_NM_002164,uc003xnm.2,uc003xnn.2_5end | |||
|cluster_id=chr8:39771339..39771352,+ | |||
|coexpression_cluster_id=C821 | |||
|description=CAGE_peak_4_at_IDO1_5end | |||
|id=chr8:39771339..39771352,+ | |||
|ontology_enrichment_celltype=CL:0000860!9.84e-20!45;CL:0002057!4.84e-19!42;CL:0002009!1.62e-15!65;CL:0002194!3.14e-15!63;CL:0000576!3.14e-15!63;CL:0000040!3.14e-15!63;CL:0000559!3.14e-15!63;CL:0000557!2.28e-13!71;CL:0000839!9.49e-13!70;CL:0000766!5.30e-12!76;CL:0000763!1.96e-08!112;CL:0000049!1.96e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.51e-47;33!CL:0002057;9.51e-47;33!CL:0000473;9.50e-33;39!CL:0000234;9.50e-33;39!CL:0000576;4.37e-21;48!CL:0000766;4.37e-12;69!CL:0000453;8.52e-09;5!CL:0000763;5.57e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.44e-40,42;CL:0002057,4.44e-40,42;CL:0000473,2.09e-34,48;CL:0000234,2.09e-34,48;CL:0002194,1.81e-26,59;CL:0000576,1.81e-26,59;CL:0000040,1.81e-26,59;CL:0000559,1.81e-26,59;CL:0002009,1.91e-25,61;CL:0000839,3.72e-23,66;CL:0000766,5.72e-23,72;CL:0000557,9.72e-23,67;CL:0000763,1.35e-18,108;CL:0000049,1.35e-18,108;CL:0000738,1.47e-13,136;CL:0002087,3.16e-11,115;CL:0002031,1.47e-10,120;CL:0002032,1.48e-10,161;CL:0000837,1.48e-10,161;CL:0000037,7.03e-10,168;CL:0000988,4.33e-09,177;CL:0000453,8.42e-09,5 | |||
|ontology_enrichment_development_v019=CL:0002057;3.22e-28;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.62e-20!112;UBERON:0002390!1.87e-18!102;UBERON:0003061!1.87e-18!102;UBERON:0001474!1.15e-12!86;UBERON:0002371!1.52e-12!80;UBERON:0002405!1.83e-12!115;UBERON:0004765!6.33e-10!101;UBERON:0001434!6.33e-10!101;UBERON:0007023!7.06e-10!115;UBERON:0001737!1.01e-07!9;UBERON:0000926!1.27e-07!448;UBERON:0004120!1.27e-07!448;UBERON:0006603!1.27e-07!448;UBERON:0001557!2.58e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.55e-09;15!UBERON:0000179;4.55e-09;15!UBERON:0000463;4.55e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.48e-29,98;UBERON:0003061,9.48e-29,98;UBERON:0002193,1.81e-25,108;UBERON:0002371,1.79e-19,76;UBERON:0002405,2.50e-18,93;UBERON:0001474,1.08e-17,82;UBERON:0004765,1.09e-15,90;UBERON:0001434,1.24e-13,100;UBERON:0003081,1.67e-12,203;UBERON:0000178,4.99e-09,15;UBERON:0000179,4.99e-09,15;UBERON:0000463,4.99e-09,15;UBERON:0000926,1.57e-07,315;UBERON:0004120,1.57e-07,315;UBERON:0006603,1.57e-07,315;UBERON:0002204,4.15e-07,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,25.3169305243492,16.6504459243915,34.762887793622,8.61864201841546,3.87290810150296,1.35426486594342,0,0,0.224723484445085,11.3251040177234,4.17207735198922,8.31138263538754,23.7492936134436,17.7522655283252,22.5899117782328,4.93355705668593,1.70215567407342,4.9825779919646,15.3261685806613,12.5155900420848,22.370451004627,13.9241885605675,4.78760926783834,14.8737322097216,0.633765858935825,0,0.209658645508376,0.112328631146495,0,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.505754070234305,0,0.110293972732394,0.435758888184812,0.237270619111097,0.404493924480493,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0.144366447761074,0.925971025153221,0.190254152234598,0,0,0,0.468008530278475,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,1.49801404789436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0.40101294060657,0,0,0,0,0,0,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.854738209659,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60541026151954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,2.44773882019626,0,0,0,0,2.53723804616085,4.58782324285425,2.84823593587081,1.19115887728894,0.411362273086194,1.29694662238543,2.70015718619057,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.19924798825107,0.828851746593443,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,1.27126825146383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,2.36750641709634,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.261177619741208,0.698906672968121,0.343972064943233,0,0.0730893170861856,0.0821154570532092,0,0.264768380074501,0,0,0,0,0,0.480952921509202,0,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0.717873024576814,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.157611414598396,0,0.528001682597033,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0.906496732161005,0,0,0,0,0,0,2.45611048905698,0.157204305099666,2.89967338743037,0.496166021811951,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,1.54095864325843,0.214441591374926,0.260994291965212,0.680117776536817,0.231522474323834,2.93684045407761,0,0,0,0,0,0.168942440653073,0,0,1.82315973706429,0,38.3874808413595,25.5100493401657,26.0068976866792,0.982829546539238,0.245772908753719,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,7.28245837545693,0,0,0,0,5.76565406057152,0,0,0,0,0,0.222462803784138,0.627944742804112,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.22910686854405,2.17144469965024,0,0,1.86485443868962,0,0,0.718639647993729,0,0.485710993059139,0,0,0,0,0,0,0.694567422971502,0.437119121007915,0,0,0,0.196308467114945,0,0,0,0.187967835959707,0.45120521581504,1.59905849479886,0.892769693028288,0,0.561689566824178,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0.581300188524055,1.36564371450887,0,2.48223917284843,0,0.435433495793923,0,0.471464371102113,4.73366555591664,0,0.244209805832924,0,0,0,0,0.611207220914332,0.406896178315738,0,0.402547587182052,0 | |||
|short_description=p4@IDO1 | |||
}} |
Latest revision as of 05:14, 18 September 2015
Short description: | p4@IDO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_IDO1_5end |
Coexpression cluster: | C821_migratory_CD14_immature_CD14CD16_Dendritic_Macrophage_Monocytederived |
Association with transcript: | 11bp_to_NM_002164, uc003xnm.2, uc003xnn.2_5end |
EntrezGene: | IDO1 |
HGNC: | 6059 |
UniProt: | P14902 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.44e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.44e-40 | 42 |
defensive cell | 2.09e-34 | 48 |
phagocyte | 2.09e-34 | 48 |
monopoietic cell | 1.81e-26 | 59 |
monocyte | 1.81e-26 | 59 |
monoblast | 1.81e-26 | 59 |
promonocyte | 1.81e-26 | 59 |
macrophage dendritic cell progenitor | 1.91e-25 | 61 |
myeloid lineage restricted progenitor cell | 3.72e-23 | 66 |
myeloid leukocyte | 5.72e-23 | 72 |
granulocyte monocyte progenitor cell | 9.72e-23 | 67 |
myeloid cell | 1.35e-18 | 108 |
common myeloid progenitor | 1.35e-18 | 108 |
leukocyte | 1.47e-13 | 136 |
nongranular leukocyte | 3.16e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 1.47e-10 | 120 |
hematopoietic oligopotent progenitor cell | 1.48e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.48e-10 | 161 |
hematopoietic stem cell | 7.03e-10 | 168 |
hematopoietic cell | 4.33e-09 | 177 |
Langerhans cell | 8.42e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.48e-29 | 98 |
blood island | 9.48e-29 | 98 |
hemolymphoid system | 1.81e-25 | 108 |
bone marrow | 1.79e-19 | 76 |
immune system | 2.50e-18 | 93 |
bone element | 1.08e-17 | 82 |
skeletal element | 1.09e-15 | 90 |
skeletal system | 1.24e-13 | 100 |
lateral plate mesoderm | 1.67e-12 | 203 |
blood | 4.99e-09 | 15 |
haemolymphatic fluid | 4.99e-09 | 15 |
organism substance | 4.99e-09 | 15 |
mesoderm | 1.57e-07 | 315 |
mesoderm-derived structure | 1.57e-07 | 315 |
presumptive mesoderm | 1.57e-07 | 315 |
musculoskeletal system | 4.15e-07 | 167 |