FFCP PHASE1:Hg19::chr9:124030412..124030481,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2934 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4620 | |||
|TSSclassifier=strong | |||
|UniProt=F8WA45,F5H8M4 | |||
|association_with_transcript=0bp_to_ENST00000394352,ENST00000456109,ENST00000477863_5end | |||
|cluster_id=chr9:124030412..124030481,+ | |||
|description=CAGE_peak_1_at_GSN_5end | |||
|id=chr9:124030412..124030481,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.14e-11!180;CL:0000057!7.39e-09!75;CL:0000451!4.24e-07!10;CL:0000990!4.60e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000451;4.12e-07;10!CL:0000990;4.53e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.79e-09,76;CL:0000451,4.23e-07,10;CL:0000990,4.59e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.44e-15!659;UBERON:0000467!2.30e-12!625;UBERON:0000480!4.60e-12!626;UBERON:0007023!3.21e-08!115;UBERON:0003102!4.83e-08!95;UBERON:0000475!6.72e-08!365;UBERON:0000062!7.51e-08!511;UBERON:0002050!1.69e-07!605;UBERON:0005423!1.69e-07!605;UBERON:0000923!2.35e-07!604;UBERON:0005291!2.35e-07!604;UBERON:0006598!2.35e-07!604;UBERON:0002532!2.35e-07!604;UBERON:0000922!6.07e-07!612;UBERON:0002199!7.58e-07!45;UBERON:0002416!7.58e-07!45;UBERON:0000479!9.08e-07!787 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,7.25e-09,99;UBERON:0007023,3.39e-08,114;UBERON:0000926,1.50e-07,315;UBERON:0004120,1.50e-07,315;UBERON:0006603,1.50e-07,315;UBERON:0002199,2.55e-07,46;UBERON:0002416,2.55e-07,46;UBERON:0000479,2.66e-07,773;UBERON:0005423,4.13e-07,581;UBERON:0002097,6.37e-07,41 | |||
|phase1_expression=184.585233338886,125.462907000116,106.279620688362,149.109214546164,96.9905574907215,147.425210572962,159.578923246036,90.9676617734637,89.8478561007445,65.8566949824044,136.071227754623,183.272311217215,264.294512184911,259.042976745378,231.646765633813,69.9218152309846,79.5556776991649,87.6372108464848,82.4606429955957,59.9599552833957,82.0082778801897,77.4233162050877,45.7977579409691,26.8273873142853,43.5632959393966,0.305653622991805,0.492603536699674,0.472264687882075,56.2510915893933,34.5446458287491,70.5961522321306,68.9565918359195,87.6509223644708,117.212021222872,0.387336002901508,1.42169232487422,23.4880351467878,35.4557061460402,29.8811226730511,20.8330435887218,108.599005006363,76.4389051804792,62.075711799839,41.8746927685146,32.8752071009264,43.6651310138069,36.2589297572868,27.5482484974623,33.7579944275663,46.0307827715441,30.9954454900212,45.6410703684969,36.1982964773449,23.8829332926016,40.6279459783025,41.6015570389156,30.5654888064787,37.5288219023291,36.1178992997665,29.5254704910006,37.0815532963444,38.9224534220325,30.318475958488,42.6224750532694,43.5313857942876,33.4757282567772,36.1236904417433,37.184802457998,40.1541847183555,40.6143139598568,54.4859552370032,33.5132648748684,34.8108626184973,65.7003940430139,23.3864729961548,94.5560491242775,74.2492251878333,48.356959494965,54.8074250637043,11.9705352371324,6.56425034756997,27.2169589109305,8.79981222306614,9.83049500271837,6.22656477704488,7.68114400619713,4.00395987036012,8.62128659931725,11.2377628373427,5.72432252721218,3.98449078376614,8.22132065119314,4.96955196562797,29.0776922873857,15.694239763483,30.815937918684,0.983548850569165,0,0.822405995998037,0.167186495390678,0,0,0,1.89397776704795,2.3568472597987,0.886135578334485,1.62482318259009,3.0741916734162,1.43065282315866,1.64437904603676,1.65810010671509,0.289803085735052,0.14828656316206,0,1.04535523804977,1.24640276967323,0.383220493601921,0.68725489096526,0.253019692019503,2.86708872891687,0,1.90090408889675,8.58278178743305,4.47953139040464,8.74515085866421,4.97232229292435,1.64225599384209,0.403213486449465,0.534880391567015,0.868946423296794,60.9517165784904,34.2057438448854,59.072503571711,68.311999800683,200.535164254356,154.985775288081,63.6228757640879,202.440106045897,37.0576483283146,24.8336925158072,23.5397225657578,92.9296540656271,224.405897588206,109.381410621407,710.109697316447,662.041261211814,967.535078695782,129.02342774919,116.114966888366,105.122472876267,45.7153536943422,73.1199405840206,77.7594723601011,88.7533468820695,77.6073956988326,38.5165258716094,54.5476862661076,79.0755283058146,67.9513561731617,43.1789590466425,117.223331278762,41.0546937087997,145.949110413805,25.7364156242108,94.7866079021659,36.3449894116205,34.5775233844302,25.4501945892308,35.2628266171531,41.7676890209977,46.1668394704626,184.492584410489,221.034750564545,127.775557277763,152.570389170463,69.3935203921897,256.873810777645,142.270963891412,59.9389565915223,77.3735088196384,52.3070079075554,76.7136075577367,41.7022787435687,42.2991510298821,36.7789282005282,61.9051879067769,88.1549164454398,104.27303716604,191.354127096986,66.7452031207006,201.755718744931,55.1942143625695,44.5150597012362,49.4386839591915,131.066977945641,120.746133917468,141.143017086096,167.50840287677,136.244078032485,66.4417794214759,200.494461566731,109.755146298051,66.5630525718849,54.581630750384,170.323316901765,230.478822440863,105.467117352431,43.6713905166081,281.282948760136,197.754142045993,151.955173131406,218.766409045529,138.399546767223,476.89263962446,236.182290684787,144.641316730765,132.124578998585,273.133343732132,163.204470292797,201.087694682602,355.364602109131,129.667950418973,154.469699594854,146.105204991452,100.916064618609,65.3914477486929,12.5632917313483,23.5902987612244,29.8618433174662,30.4763501745189,22.4565557279309,30.6580981623697,142.369074420133,145.372452031592,185.100794612324,257.259832129716,438.180845373438,9.10962360306798,11.8009283054671,9.64044119533928,11.6911611096338,10.6760927605279,8.77901290711057,12.9438055833758,10.5959591167687,10.7729203944989,70.1247681893416,99.5716594004465,72.025451982995,158.769408296385,3.80265104465493,5.89696330006576,13.5881678536723,0,32.3459593368389,22.1322475285098,193.489753175407,91.0454201386718,35.7883141785406,141.197378866758,84.7101593806844,120.632435092431,17.3197610430328,87.8752469711082,44.2630777269048,47.7852942089154,54.1693049714635,45.6609965363036,147.768222418384,156.244481501267,336.82486432756,820.886962108446,577.283434329421,94.6711723266448,131.697988507906,104.062921375912,85.5283891812201,65.1020022271275,120.382161257876,31.5304472253404,161.656924848283,75.467434056841,74.0776560563182,77.8915814240764,180.016530318299,336.913791342401,575.537665801331,360.962861107908,212.955737388583,251.086796357515,260.959532991718,74.7914332583556,50.5713679846605,62.3375429478075,88.5511252940778,436.340863939297,61.707100936588,187.752310308919,153.931006628822,142.7500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| |||
|short_description=p1@GSN | |||
}} |
Latest revision as of 20:39, 24 September 2015
Short description: | p1@GSN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GSN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000394352, ENST00000456109, ENST00000477863_5end |
EntrezGene: | GSN |
HGNC: | 4620 |
UniProt: | F8WA45F5H8M4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.79e-09 | 76 |
dendritic cell | 4.23e-07 | 10 |
conventional dendritic cell | 4.59e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
surface structure | 7.25e-09 | 99 |
adult organism | 3.39e-08 | 114 |
mesoderm | 1.50e-07 | 315 |
mesoderm-derived structure | 1.50e-07 | 315 |
presumptive mesoderm | 1.50e-07 | 315 |
integument | 2.55e-07 | 46 |
integumental system | 2.55e-07 | 46 |
tissue | 2.66e-07 | 773 |
developing anatomical structure | 4.13e-07 | 581 |
skin of body | 6.37e-07 | 41 |