FFCP PHASE2:Hg19::chr20:6034672..6034714,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:164312 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:16208 |TSScl...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=164312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=16208 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q8WUT4,Q6ZMD1 | ||
|association_with_transcript=0bp_to_ENST00000378858,NM_152611,uc002wmo.2,uc002wmp.2_5end | |association_with_transcript=0bp_to_ENST00000378858,NM_152611,uc002wmo.2,uc002wmp.2_5end | ||
|cluster_id=chr20:6034672..6034714,- | |cluster_id=chr20:6034672..6034714,- | ||
Latest revision as of 09:46, 17 September 2015
| Short description: | p2@LRRN4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_LRRN4_5end |
| Coexpression cluster: | C548_Mesothelial_mesenchymal_rhabdomyosarcoma_Renal_mesothelioma_Hepatic_clear |
| Association with transcript: | 0bp_to_ENST00000378858, NM_152611, uc002wmo.2, uc002wmp.2_5end |
| EntrezGene: | LRRN4 |
| HGNC: | 16208 |
| UniProt: | Q8WUT4Q6ZMD1 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@LRRN4 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| kidney cell | 2.02e-43 | 17 |
| kidney epithelial cell | 2.02e-43 | 17 |
| epithelial cell of nephron | 3.06e-43 | 15 |
| kidney tubule cell | 8.34e-35 | 10 |
| nephron tubule epithelial cell | 8.34e-35 | 10 |
| kidney cortical cell | 2.93e-33 | 12 |
| renal cortical epithelial cell | 2.93e-33 | 12 |
| mesothelial cell | 2.81e-20 | 19 |
| glomerular cell | 3.91e-17 | 7 |
| kidney corpuscule cell | 3.91e-17 | 7 |
Showing 1 to 10 of 22 entries
| Ontology term | p-value | n |
|---|---|---|
| nephron epithelium | 3.06e-43 | 15 |
| renal tubule | 3.06e-43 | 15 |
| nephron tubule | 3.06e-43 | 15 |
| nephron | 3.06e-43 | 15 |
| uriniferous tubule | 3.06e-43 | 15 |
| nephrogenic mesenchyme | 3.06e-43 | 15 |
| excretory tube | 2.57e-40 | 16 |
| kidney epithelium | 2.57e-40 | 16 |
| nephron tubule epithelium | 8.34e-35 | 10 |
| cortex of kidney | 2.93e-33 | 12 |
Showing 1 to 10 of 66 entries
| Ontology term | p-value | n |
|---|---|---|
| female reproductive organ cancer | 8.77e-22 | 27 |
| reproductive organ cancer | 4.78e-20 | 29 |
| ovarian cancer | 6.97e-15 | 14 |
| clear cell adenocarcinoma | 4.02e-08 | 2 |
Showing 1 to 4 of 4 entries
