FF:11297-117B1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=dog_CAGE@SAMD00053780 | ||
|DRA_sample_Accession_Zoo=dog_sRNA@SAMD00053780 | |||
|accession_numbers=dog_CAGE;DRX057310;DRR063069;DRZ007596;DRZ007609 | |||
|accession_numbers_Zoo=dog_sRNA;DRX163587;DRR172976;DRZ014423 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
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|ancestors_in_anatomy_facet=UBERON: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000016,FF:0000001,FF:0000017 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|def= | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 66: | Line 39: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:11297-117B1 | |||
|is_a=EFO:0002091;;FF:0000017 | |||
|is_obsolete= | |||
|library_id=CNhs11895 | |||
|name=Canine Aortic Smooth Muscle cells, donor1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11895,LSID834,release010,COMPLETED | |||
|profile_rnaseq=,,, | |||
|profile_srnaseq=SRhi10006,,, | |||
|rna_box=117 | |||
|rna_catalog_number=N/A | |||
|rna_concentration=0.224 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.57 | |||
|rna_od260/280=2.06 | |||
|rna_position=B1 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=117B1 | |||
|rna_weight_ug=11.2 | |||
|sample_age=U | |||
|sample_category=primary cells | |||
|sample_cell_catalog=CACn35405 | |||
|sample_cell_line= | |||
|sample_cell_lot=lot:1261 | |||
|sample_cell_type=smooth muscle cell | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Cell Applications | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_id=11297 | |||
|sample_note= | |||
|sample_sex=unknown | |||
|sample_species=Canis lupus familaris | |||
|sample_strain= | |||
|sample_tissue=aorta | |||
|top_motifs= | |top_motifs= | ||
|xref= | |||
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=4z61KhduJdFmBsHnv6C65D | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_dog;search_select_hide=table111:FF:11297-117B1;search_select_hide=table117:FF:11297-117B1 | |||
|zoo_library_id=SRhi10006.CGATGT | |||
}} | }} | ||
Latest revision as of 09:38, 5 June 2020
| Name: | Canine Aortic Smooth Muscle cells, donor1 |
|---|---|
| Species: | Canis lupus familaris |
| Library ID: | CNhs11895 |
| Sample type: | primary cells |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||
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| sRNA Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000016 (canine sample)
0000001 (sample)
0000017 (canine aortic smooth muscle cell)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
