FFCP PHASE1:Hg19::chr12:498695..498748,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:498695..498748,- to FFCP PHASE1:Hg19::chr12:498695..498748,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5927 | |EntrezGene=5927 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9886 | |HGNC=9886 | ||
|TSSclassifier=strong | |||
|UniProt=E7EV89,F5H1F7,A8MUS2,P29375 | |UniProt=E7EV89,F5H1F7,A8MUS2,P29375 | ||
|association_with_transcript=-75bp_to_ENST00000261253,ENST00000382815,ENST00000399787,ENST00000399788,NM_001042603,uc001qie.1,uc001qif.1,uc010sdn.1,uc010sdo.1_5end | |||
|cluster_id=chr12:498695..498748,- | |||
|description=CAGE_peak_2_at_KDM5A_5end | |||
|id=chr12:498695..498748,- | |||
|ontology_enrichment_celltype=CL:0000738!8.89e-13!140;CL:0002087!3.95e-11!119;CL:0000037!3.32e-10!172;CL:0000566!3.32e-10!172;CL:0002031!3.56e-09!124;CL:0002032!6.38e-09!165;CL:0000837!6.38e-09!165;CL:0000988!7.13e-08!182;CL:0002057!1.06e-07!42;CL:0000766!2.19e-07!76;CL:0000860!6.76e-07!45;CL:0002194!8.53e-07!63;CL:0000576!8.53e-07!63;CL:0000040!8.53e-07!63;CL:0000559!8.53e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.07e-07;33!CL:0002057;2.07e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.96e-13,136;CL:0002087,1.28e-11,115;CL:0000037,1.56e-10,168;CL:0002031,1.43e-09,120;CL:0002032,3.18e-09,161;CL:0000837,3.18e-09,161;CL:0000988,2.15e-08,177;CL:0000766,7.00e-08,72;CL:0000860,1.06e-07,42;CL:0002057,1.06e-07,42;CL:0002194,2.47e-07,59;CL:0000576,2.47e-07,59;CL:0000040,2.47e-07,59;CL:0000559,2.47e-07,59;CL:0002009,5.89e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.23e-16!115;UBERON:0001049!1.17e-09!57;UBERON:0005068!1.17e-09!57;UBERON:0006241!1.17e-09!57;UBERON:0007135!1.17e-09!57;UBERON:0002616!8.20e-09!59;UBERON:0003080!1.56e-08!42;UBERON:0002780!2.93e-08!41;UBERON:0001890!2.93e-08!41;UBERON:0006240!2.93e-08!41;UBERON:0002390!6.27e-08!102;UBERON:0003061!6.27e-08!102;UBERON:0000955!2.28e-07!69;UBERON:0006238!2.28e-07!69;UBERON:0002193!4.04e-07!112;UBERON:0002020!8.55e-07!34;UBERON:0003528!8.55e-07!34;UBERON:0001017!9.43e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.98e-16,114;UBERON:0001049,2.19e-09,56;UBERON:0005068,2.19e-09,56;UBERON:0006241,2.19e-09,56;UBERON:0007135,2.19e-09,56;UBERON:0000073,1.44e-08,53;UBERON:0002616,1.44e-08,53;UBERON:0002390,2.40e-08,98;UBERON:0003061,2.40e-08,98;UBERON:0002780,2.93e-08,41;UBERON:0001890,2.93e-08,41;UBERON:0003080,2.93e-08,41;UBERON:0006240,2.93e-08,41;UBERON:0002193,1.78e-07,108;UBERON:0000955,3.91e-07,68;UBERON:0006238,3.91e-07,68;UBERON:0003528,8.54e-07,34;UBERON:0002020,8.54e-07,34 | |||
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| ||
|short_description=p2@KDM5A | |||
}} | }} |
Latest revision as of 16:28, 18 September 2015
Short description: | p2@KDM5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_KDM5A_5end |
Coexpression cluster: | NA |
Association with transcript: | -75bp_to_ENST00000261253, ENST00000382815, ENST00000399787, ENST00000399788, NM_001042603, uc001qie.1, uc001qif.1, uc010sdn.1, uc010sdo.1_5end |
EntrezGene: | KDM5A |
HGNC: | 9886 |
UniProt: | E7EV89F5H1F7A8MUS2P29375 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.96e-13 | 136 |
nongranular leukocyte | 1.28e-11 | 115 |
hematopoietic stem cell | 1.56e-10 | 168 |
hematopoietic lineage restricted progenitor cell | 1.43e-09 | 120 |
hematopoietic oligopotent progenitor cell | 3.18e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.18e-09 | 161 |
hematopoietic cell | 2.15e-08 | 177 |
myeloid leukocyte | 7.00e-08 | 72 |
classical monocyte | 1.06e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-07 | 42 |
monopoietic cell | 2.47e-07 | 59 |
monocyte | 2.47e-07 | 59 |
monoblast | 2.47e-07 | 59 |
promonocyte | 2.47e-07 | 59 |
macrophage dendritic cell progenitor | 5.89e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.98e-16 | 114 |
neural tube | 2.19e-09 | 56 |
neural rod | 2.19e-09 | 56 |
future spinal cord | 2.19e-09 | 56 |
neural keel | 2.19e-09 | 56 |
regional part of nervous system | 1.44e-08 | 53 |
regional part of brain | 1.44e-08 | 53 |
hematopoietic system | 2.40e-08 | 98 |
blood island | 2.40e-08 | 98 |
regional part of forebrain | 2.93e-08 | 41 |
forebrain | 2.93e-08 | 41 |
anterior neural tube | 2.93e-08 | 41 |
future forebrain | 2.93e-08 | 41 |
hemolymphoid system | 1.78e-07 | 108 |
brain | 3.91e-07 | 68 |
future brain | 3.91e-07 | 68 |
brain grey matter | 8.54e-07 | 34 |
gray matter | 8.54e-07 | 34 |