FFCP PHASE1:Hg19::chr14:55493920..55494013,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:55493920..55494013,+ to FFCP PHASE1:Hg19::chr14:55493920..55494013,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=122809 | |EntrezGene=122809 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19392 | |HGNC=19392 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WXH5 | |UniProt=Q8WXH5 | ||
|association_with_transcript=0bp_to_ENST00000395472,ENST00000553735,ENST00000555846_5end | |||
|cluster_id=chr14:55493920..55494013,+ | |||
|description=CAGE_peak_1_at_SOCS4_5end | |||
|id=chr14:55493920..55494013,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.94e-16!140;CL:0000037!9.70e-14!172;CL:0000566!9.70e-14!172;CL:0002031!4.49e-13!124;CL:0002032!6.15e-13!165;CL:0000837!6.15e-13!165;CL:0000988!2.17e-12!182;CL:0002087!1.01e-11!119;CL:0000557!3.47e-09!71;CL:0000860!9.22e-09!45;CL:0000766!1.06e-08!76;CL:0002009!1.30e-08!65;CL:0000763!2.17e-08!112;CL:0000049!2.17e-08!112;CL:0000839!3.39e-08!70;CL:0002057!4.05e-08!42;CL:0002194!7.75e-08!63;CL:0000576!7.75e-08!63;CL:0000040!7.75e-08!63;CL:0000559!7.75e-08!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.42e-10;33!CL:0002057;4.42e-10;33!CL:0000473;8.70e-08;39!CL:0000234;8.70e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.86e-15,136;CL:0000037,4.28e-13,168;CL:0002031,1.99e-12,120;CL:0002032,2.64e-12,161;CL:0000837,2.64e-12,161;CL:0000988,3.44e-12,177;CL:0002087,4.26e-11,115;CL:0000557,1.42e-08,67;CL:0000860,4.05e-08,42;CL:0002057,4.05e-08,42;CL:0000766,4.23e-08,72;CL:0002009,5.25e-08,61;CL:0000763,7.94e-08,108;CL:0000049,7.94e-08,108;CL:0000839,1.34e-07,66;CL:0000473,1.59e-07,48;CL:0000234,1.59e-07,48;CL:0002194,3.05e-07,59;CL:0000576,3.05e-07,59;CL:0000040,3.05e-07,59;CL:0000559,3.05e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.09e-10!57;UBERON:0005068!6.09e-10!57;UBERON:0006241!6.09e-10!57;UBERON:0007135!6.09e-10!57;UBERON:0002616!2.51e-08!59;UBERON:0003080!2.87e-08!42;UBERON:0002780!4.39e-08!41;UBERON:0001890!4.39e-08!41;UBERON:0006240!4.39e-08!41;UBERON:0002390!4.68e-08!102;UBERON:0003061!4.68e-08!102;UBERON:0001474!4.77e-08!86;UBERON:0007023!6.25e-08!115;UBERON:0001017!2.07e-07!82;UBERON:0002371!2.41e-07!80;UBERON:0000073!7.64e-07!94;UBERON:0001016!7.64e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.37e-10,56;UBERON:0005068,9.37e-10,56;UBERON:0006241,9.37e-10,56;UBERON:0007135,9.37e-10,56;UBERON:0000073,7.99e-09,53;UBERON:0002616,7.99e-09,53;UBERON:0002780,4.39e-08,41;UBERON:0001890,4.39e-08,41;UBERON:0003080,4.39e-08,41;UBERON:0006240,4.39e-08,41;UBERON:0001016,9.25e-08,89;UBERON:0007023,1.09e-07,114;UBERON:0002390,1.71e-07,98;UBERON:0003061,1.71e-07,98;UBERON:0001474,1.80e-07,82;UBERON:0001017,3.02e-07,81;UBERON:0002371,8.88e-07,76 | |||
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| ||
|short_description=p1@SOCS4 | |||
}} | }} |
Latest revision as of 15:21, 24 September 2015
Short description: | p1@SOCS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOCS4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395472, ENST00000553735, ENST00000555846_5end |
EntrezGene: | SOCS4 |
HGNC: | 19392 |
UniProt: | Q8WXH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.86e-15 | 136 |
hematopoietic stem cell | 4.28e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 1.99e-12 | 120 |
hematopoietic oligopotent progenitor cell | 2.64e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.64e-12 | 161 |
hematopoietic cell | 3.44e-12 | 177 |
nongranular leukocyte | 4.26e-11 | 115 |
granulocyte monocyte progenitor cell | 1.42e-08 | 67 |
classical monocyte | 4.05e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.05e-08 | 42 |
myeloid leukocyte | 4.23e-08 | 72 |
macrophage dendritic cell progenitor | 5.25e-08 | 61 |
myeloid cell | 7.94e-08 | 108 |
common myeloid progenitor | 7.94e-08 | 108 |
myeloid lineage restricted progenitor cell | 1.34e-07 | 66 |
defensive cell | 1.59e-07 | 48 |
phagocyte | 1.59e-07 | 48 |
monopoietic cell | 3.05e-07 | 59 |
monocyte | 3.05e-07 | 59 |
monoblast | 3.05e-07 | 59 |
promonocyte | 3.05e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
neural tube | 9.37e-10 | 56 |
neural rod | 9.37e-10 | 56 |
future spinal cord | 9.37e-10 | 56 |
neural keel | 9.37e-10 | 56 |
regional part of nervous system | 7.99e-09 | 53 |
regional part of brain | 7.99e-09 | 53 |
regional part of forebrain | 4.39e-08 | 41 |
forebrain | 4.39e-08 | 41 |
anterior neural tube | 4.39e-08 | 41 |
future forebrain | 4.39e-08 | 41 |
nervous system | 9.25e-08 | 89 |
adult organism | 1.09e-07 | 114 |
hematopoietic system | 1.71e-07 | 98 |
blood island | 1.71e-07 | 98 |
bone element | 1.80e-07 | 82 |
central nervous system | 3.02e-07 | 81 |
bone marrow | 8.88e-07 | 76 |