FFCP PHASE1:Hg19::chr16:3306615..3306657,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:3306615..3306657,- to FFCP PHASE1:Hg19::chr16:3306615..3306657,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4210 | |EntrezGene=4210 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6998 | |HGNC=6998 | ||
|TSSclassifier=strong | |||
|UniProt=O15553,F8W6Z2,F5H870,F5GZV9,F5H2E5,F5H6N9,F5H595,F5H7E6,D2DTW2 | |UniProt=O15553,F8W6Z2,F5H870,F5GZV9,F5H2E5,F5H6N9,F5H595,F5H7E6,D2DTW2 | ||
|association_with_transcript=0bp_to_ENST00000219596,ENST00000339854,ENST00000534868,ENST00000536980,ENST00000537682,ENST00000538326,ENST00000542898,ENST00000545159,NM_000243,NM_001198536,uc002cun.1_5end | |||
|cluster_id=chr16:3306615..3306657,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_MEFV_5end | |||
|id=chr16:3306615..3306657,- | |||
|ontology_enrichment_celltype=CL:0000766!7.31e-46!76;CL:0002009!4.26e-42!65;CL:0002194!1.37e-41!63;CL:0000576!1.37e-41!63;CL:0000040!1.37e-41!63;CL:0000559!1.37e-41!63;CL:0000738!2.22e-41!140;CL:0000557!9.61e-40!71;CL:0002057!2.01e-38!42;CL:0002087!4.27e-37!119;CL:0000860!6.37e-37!45;CL:0000839!7.59e-37!70;CL:0000037!1.71e-36!172;CL:0000566!1.71e-36!172;CL:0000763!8.26e-35!112;CL:0000049!8.26e-35!112;CL:0002032!1.71e-34!165;CL:0000837!1.71e-34!165;CL:0002031!9.94e-34!124;CL:0000988!4.27e-32!182;CL:0002393!1.63e-08!9;CL:0002397!1.63e-08!9;CL:0000094!2.30e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.42e-39;33!CL:0002057;3.42e-39;33!CL:0000576;3.95e-37;48!CL:0000473;5.83e-35;39!CL:0000234;5.83e-35;39!CL:0000766;3.27e-28;69!CL:0000763;2.35e-15;100!CL:0002087;5.28e-14;104!CL:0000094;4.50e-11;8!CL:0000738;5.68e-11;136!CL:0002393;4.63e-08;6!CL:0002397;4.63e-08;6!CL:0000988;1.35e-07;177!CL:0000081;1.88e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.51e-62,72;CL:0002194,1.66e-58,59;CL:0000576,1.66e-58,59;CL:0000040,1.66e-58,59;CL:0000559,1.66e-58,59;CL:0000473,3.77e-56,48;CL:0000234,3.77e-56,48;CL:0002009,6.58e-56,61;CL:0000860,3.53e-53,42;CL:0002057,3.53e-53,42;CL:0000557,9.71e-51,67;CL:0000839,4.17e-50,66;CL:0000738,1.57e-46,136;CL:0002087,3.54e-44,115;CL:0000763,2.94e-43,108;CL:0000049,2.94e-43,108;CL:0000037,7.12e-40,168;CL:0002032,9.60e-38,161;CL:0000837,9.60e-38,161;CL:0002031,7.43e-37,120;CL:0000988,2.62e-36,177;CL:0002393,2.83e-11,9;CL:0002397,2.83e-11,9;CL:0000094,4.55e-11,8;CL:0000134,1.90e-07,354;CL:0000081,1.90e-07,11;CL:0002320,7.08e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;4.32e-38;42!CL:0000049;3.65e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.84e-42!102;UBERON:0003061!9.84e-42!102;UBERON:0002193!2.32e-37!112;UBERON:0002371!2.61e-33!80;UBERON:0007023!3.76e-33!115;UBERON:0001474!4.53e-29!86;UBERON:0002405!1.07e-25!115;UBERON:0004765!5.21e-23!101;UBERON:0001434!5.21e-23!101;UBERON:0003081!1.44e-11!216;UBERON:0000178!5.88e-08!15;UBERON:0000179!5.88e-08!15;UBERON:0000463!5.88e-08!15;UBERON:0002204!9.85e-08!167;UBERON:0000479!4.50e-07!787;UBERON:0001049!9.88e-07!57;UBERON:0005068!9.88e-07!57;UBERON:0006241!9.88e-07!57;UBERON:0007135!9.88e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.46e-11;15!UBERON:0000179;3.46e-11;15!UBERON:0000463;3.46e-11;15!UBERON:0002390;6.03e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.73e-55,98;UBERON:0003061,1.73e-55,98;UBERON:0002193,5.44e-51,108;UBERON:0002371,1.09e-43,76;UBERON:0002405,2.56e-40,93;UBERON:0001474,5.77e-39,82;UBERON:0004765,1.14e-33,90;UBERON:0001434,2.77e-28,100;UBERON:0003081,1.42e-21,203;UBERON:0007023,3.75e-18,114;UBERON:0000178,3.52e-11,15;UBERON:0000179,3.52e-11,15;UBERON:0000463,3.52e-11,15;UBERON:0002204,1.06e-10,167;UBERON:0000926,3.83e-09,315;UBERON:0004120,3.83e-09,315;UBERON:0006603,3.83e-09,315;UBERON:0002384,9.67e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,92.4406050594924,55.2714333259986,59.2945752300571,0,0,0,0,0,0,75.8973709688672,96.261334785668,70.311522111936,14.778421299835,16.518576966968,20.6060454107349,260.844440370539,263.001656807411,264.659210755907,269.152824736783,192.837739482236,182.417052457216,597.249406460784,666.786319095249,535.159286237868,467.819888759591,385.999840783128,381.902692196044,273.516119355405,211.229360144773,195.509431467224,582.783731074198,523.756172188185,666.8286222084,674.216057581648,666.807007429115,688.352972110301,422.25444220459,348.941913185051,459.642819758734,459.533808754583,505.316947949175,404.188439996222,388.061081187989,415.048895757985,410.451716510827,163.934102178067,127.349975679061,110.909423473931,193.092916940825,157.53556059074,173.583633632847,93.7691926908708,108.210672396305,110.146484720074,0,6.55366333514558,0.889509253863555,6.82768356106412,2.80277190925209,1.14950487990897,2.64417949113945,0.954053754535364,0.569212969109448,2.34894875748376,0.382273228125229,1.32171328579026,14.5732226375199,0.790152254325231,0.196709770113833,0.786021525498329,1.02800749499755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0.253019692019503,3.82278497188916,0.651083453856419,0,7.98048131112196,4.22355816809581,11.2437653897111,15.3905213828611,2.46338399076314,0.201606743224732,0,0,0,0,0,0,0,0,0,1.45990461090791,0,0,0.175669571386252,1.83370705696798,0,0,0,0,0.26591592103773,4.29283123749616,4.57595928624102,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,326.815435241437,391.658066789809,0,0,0,0,0,1.77334191099179,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.516628905878827,0,0.247266929278557,0,0,0,0,0.554128230968366,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,3.9313088667105,1.18157981336281,0,0,0,0.219500570817251,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,7.14029317653452,0.468008530278475,2.82399208348584,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,3.64871341923571,9.04062764577828,8.43335757932127,0,0,0,0.144781306667579,0.61642896765115,0,0.112085143993527,2.56139988262505,1.07813787429759,4.87703537863044,0,0,0,0,0,492.097614733299,550.457084935406,461.244466454307,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,58.7221194189,78.9513974996138,47.4937632225327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.83111688522689,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,8.19051066757979,0,0,0,0,183.696034542045,205.687408721299,256.910881415547,163.188766188585,207.326585635442,207.51145958167,185.230782972673,204.626295483922,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0.561594356226918,1.14117339516596,0,2.50634477090067,0,0.642352300414798,0.403599414382095,7.23938604073555,17.8622779272998,14.1330751581891,12.3021859340829,10.1777976444264,7.03397143447345,0,0,0.270455678475983,0,0,0,3.80921266106924,0,1.44876399560722,0.284136146806413,0,0.890894042497916,0,0,0.703347082052564,0.111308705022906,0.494411622680279,0,3.18796781201712,2.76283915531148,0,0,0,0,0,0,6.65044081294933,2.56472854656027,95.7932369387759,1.11136990144637,0,0.74214478529481,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.482385754501632,1.52581736317083,0.552896299656123,0.295547618953547,0.438770794307945,0,0,1.46205491157214,3.76008784295104,0,0,0,0.31900115973192,0,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,1.76915129006678,1.22206028986725,0,0,0,0.539209063845416,0,0.468528891450678,0,0,0,0,1.20990716048664,0,7.96150903318948,0,0,0.664653872707185,0.661983911750998,0,1.19472429772959,0,0,0,0,0.0870592065804026,2.62090002363045,0.171986032471617,0.0967563312890851,0.292357268344742,0,1.35784623083787,0,0.451961481561065,0.137041924646751,3.17943378724783,0.0633107959558787,0,0.64127056201227,0.85381197895741,0,0,0,0,0.14405479798815,0,0,0,0,0,0,1.20084057741958,1.50595916781192,1.27746588066972,0,0,3.35138881526705,0.458320848023367,5.0251111720377,1.39775300349294,3.004582336956,4.24025769139558,1.14211903227435,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0.449947783103001,0.77380195455795,0.182248669974074,0,1.33969702408637,1.20645552710496,0,0.179287339332845,0,1.42939065274673,1.98627591109629,0,0,0,0,0,0,0,0.339936274560377,1.31897010310274,6.62534444561107,0.904980694530854,0.79339561045614,0,0,13.4552139835295,4.40172054279065,8.28478110694391,15.3811466761705,0,0,0,0,0,0.306345576763462,0,0,0,1.34228891392159,1.001527445652,1.14681839138014,1.44207766997908,0.993542447062135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438568099157414,0,0,0,0,0,0,0.414775308455192,0,0,0,0.327609848846413,1.47463745252232,0,0,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| ||
|short_description=p1@MEFV | |||
}} | }} |
Latest revision as of 13:46, 16 September 2015
Short description: | p1@MEFV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MEFV_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000219596, ENST00000339854, ENST00000534868, ENST00000536980, ENST00000537682, ENST00000538326, ENST00000542898, ENST00000545159, NM_000243, NM_001198536, uc002cun.1_5end |
EntrezGene: | MEFV |
HGNC: | 6998 |
UniProt: | O15553F8W6Z2F5H870F5GZV9F5H2E5F5H6N9F5H595F5H7E6D2DTW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.51e-62 | 72 |
monopoietic cell | 1.66e-58 | 59 |
monocyte | 1.66e-58 | 59 |
monoblast | 1.66e-58 | 59 |
promonocyte | 1.66e-58 | 59 |
defensive cell | 3.77e-56 | 48 |
phagocyte | 3.77e-56 | 48 |
macrophage dendritic cell progenitor | 6.58e-56 | 61 |
classical monocyte | 3.53e-53 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.53e-53 | 42 |
granulocyte monocyte progenitor cell | 9.71e-51 | 67 |
myeloid lineage restricted progenitor cell | 4.17e-50 | 66 |
leukocyte | 1.57e-46 | 136 |
nongranular leukocyte | 3.54e-44 | 115 |
myeloid cell | 2.94e-43 | 108 |
common myeloid progenitor | 2.94e-43 | 108 |
hematopoietic stem cell | 7.12e-40 | 168 |
hematopoietic oligopotent progenitor cell | 9.60e-38 | 161 |
hematopoietic multipotent progenitor cell | 9.60e-38 | 161 |
hematopoietic lineage restricted progenitor cell | 7.43e-37 | 120 |
hematopoietic cell | 2.62e-36 | 177 |
intermediate monocyte | 2.83e-11 | 9 |
CD14-positive, CD16-positive monocyte | 2.83e-11 | 9 |
granulocyte | 4.55e-11 | 8 |
mesenchymal cell | 1.90e-07 | 354 |
blood cell | 1.90e-07 | 11 |
connective tissue cell | 7.08e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.73e-55 | 98 |
blood island | 1.73e-55 | 98 |
hemolymphoid system | 5.44e-51 | 108 |
bone marrow | 1.09e-43 | 76 |
immune system | 2.56e-40 | 93 |
bone element | 5.77e-39 | 82 |
skeletal element | 1.14e-33 | 90 |
skeletal system | 2.77e-28 | 100 |
lateral plate mesoderm | 1.42e-21 | 203 |
adult organism | 3.75e-18 | 114 |
blood | 3.52e-11 | 15 |
haemolymphatic fluid | 3.52e-11 | 15 |
organism substance | 3.52e-11 | 15 |
musculoskeletal system | 1.06e-10 | 167 |
mesoderm | 3.83e-09 | 315 |
mesoderm-derived structure | 3.83e-09 | 315 |
presumptive mesoderm | 3.83e-09 | 315 |
connective tissue | 9.67e-07 | 371 |