FFCP PHASE1:Hg19::chr17:38444205..38444214,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:38444205..38444214,+ to FFCP PHASE1:Hg19::chr17:38444205..38444214,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=990 | |EntrezGene=990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1744 | |HGNC=1744 | ||
|TSSclassifier=strong | |||
|UniProt=Q99741 | |UniProt=Q99741 | ||
|association_with_transcript=59bp_to_NM_001254,uc002huj.1_5end | |||
|cluster_id=chr17:38444205..38444214,+ | |||
|description=CAGE_peak_3_at_CDC6_5end | |||
|id=chr17:38444205..38444214,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.25e-09!254 | |||
|ontology_enrichment_celltype_v019=CL:0000222;1.97e-08;1!CL:0002553;1.97e-08;1!CL:0002032;5.39e-08;1!CL:0002127;5.39e-08;1!CL:0000911;5.39e-08;1!CL:1001319;5.39e-08;1!CL:1000600;5.39e-08;1!CL:0000557;5.39e-08;1!CL:0000814;5.39e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,1.91e-08,1;CL:1001319,3.11e-08,1;CL:1000600,3.11e-08,1;CL:0002127,8.12e-08,1;CL:0000914,8.12e-08,1;CL:0000911,8.12e-08,1;CL:0000814,8.12e-08,1;CL:0002042,8.12e-08,1;CL:0002039,8.12e-08,1;CL:0002040,8.12e-08,1;CL:0002041,8.12e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.73e-17;29 | |||
|ontology_enrichment_disease=DOID:14566!1.04e-38!239;DOID:162!3.61e-38!235;DOID:0050687!3.60e-26!143;DOID:305!5.39e-22!106;DOID:0050686!2.57e-12!137;DOID:7!1.68e-08!39;DOID:2531!4.66e-07!51;DOID:0060083!4.66e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.98e-10,106;DOID:0050687,6.40e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.88e-10!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.23e-26;9!UBERON:0001557;1.23e-26;9!UBERON:0000072;6.66e-13;37!UBERON:0000065;3.64e-10;44!UBERON:0004645;5.39e-08;1!UBERON:0001256;5.39e-08;1!UBERON:0001259;5.39e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.23e-27,9;UBERON:0001557,8.32e-17,19;UBERON:0008947,3.59e-13,38;UBERON:0003258,3.59e-13,38;UBERON:0000072,9.05e-13,47;UBERON:0000065,6.83e-11,54;UBERON:0004645,3.11e-08,1;UBERON:0001256,3.11e-08,1;UBERON:0001259,3.11e-08,1;UBERON:0001004,1.72e-07,74 | |||
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| ||
|short_description=p3@CDC6 | |||
}} | }} |
Latest revision as of 00:36, 20 September 2015
Short description: | p3@CDC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDC6_5end |
Coexpression cluster: | NA |
Association with transcript: | 59bp_to_NM_001254, uc002huj.1_5end |
EntrezGene: | CDC6 |
HGNC: | 1744 |
UniProt: | Q99741 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 1.91e-08 | 1 |
bladder cell | 3.11e-08 | 1 |
lower urinary tract cell | 3.11e-08 | 1 |
innate effector T cell | 8.12e-08 | 1 |
immature NK T cell | 8.12e-08 | 1 |
effector T cell | 8.12e-08 | 1 |
mature NK T cell | 8.12e-08 | 1 |
immature NK T cell stage IV | 8.12e-08 | 1 |
immature NK T cell stage I | 8.12e-08 | 1 |
immature NK T cell stage II | 8.12e-08 | 1 |
immature NK T cell stage III | 8.12e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.23e-27 | 9 |
upper respiratory tract | 8.32e-17 | 19 |
respiratory primordium | 3.59e-13 | 38 |
endoderm of foregut | 3.59e-13 | 38 |
segment of respiratory tract | 9.05e-13 | 47 |
respiratory tract | 6.83e-11 | 54 |
urinary bladder urothelium | 3.11e-08 | 1 |
wall of urinary bladder | 3.11e-08 | 1 |
mucosa of urinary bladder | 3.11e-08 | 1 |
respiratory system | 1.72e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.98e-10 | 106 |
cell type cancer | 6.40e-09 | 143 |