FFCP PHASE1:Hg19::chr1:163044209..163044226,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:163044209..163044226,+ to FFCP PHASE1:Hg19::chr1:163044209..163044226,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:163044209..163044226,+ | |||
|description=CAGE_peak_at_chr1:163044209..163044226,+ | |||
|id=chr1:163044209..163044226,+ | |||
|ontology_enrichment_celltype=CL:0000359!1.37e-15!32;CL:0000055!5.20e-12!180;CL:0000680!4.29e-11!57;CL:0000056!4.29e-11!57;CL:0000355!4.29e-11!57;CL:0000192!2.40e-10!42;CL:0000514!2.40e-10!42;CL:0000187!4.74e-10!54;CL:0000222!4.21e-09!119;CL:0000183!1.30e-08!59;CL:0000393!2.34e-08!60;CL:0000211!2.34e-08!60;CL:0002494!3.39e-07!16;CL:0002594!6.32e-07!4;CL:1000306!7.56e-07!4;CL:0002547!7.56e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002594;7.78e-13;4!CL:0002595;2.48e-11;5!CL:0000359;6.32e-10;32!CL:0000511;9.23e-07;1!CL:0002625;9.23e-07;1!CL:0000216;9.23e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002594,1.41e-12,4;CL:0002595,2.44e-11,5;CL:0000359,4.13e-10,32;CL:0000192,3.21e-07,43;CL:0000514,3.21e-07,43;CL:0000511,7.15e-07,1;CL:0002625,7.15e-07,1;CL:0000216,7.15e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!4.39e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.90e-18;3!DOID:127;2.90e-18;3!DOID:0060072;7.87e-14;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.91e-18,3;DOID:127,2.91e-18,3;DOID:0060072,7.89e-14,4 | |||
|ontology_enrichment_uberon=UBERON:0001637!2.18e-19!42;UBERON:0003509!2.18e-19!42;UBERON:0004572!2.18e-19!42;UBERON:0004872!8.15e-17!84;UBERON:0001981!3.17e-14!60;UBERON:0007500!3.17e-14!60;UBERON:0004537!3.17e-14!60;UBERON:0006965!3.17e-14!60;UBERON:0004573!1.57e-13!33;UBERON:0004571!1.57e-13!33;UBERON:0000055!3.43e-11!69;UBERON:0002049!4.24e-11!79;UBERON:0007798!4.24e-11!79;UBERON:0004535!9.59e-11!110;UBERON:0001009!3.67e-10!113;UBERON:0002385!4.34e-10!63;UBERON:0001015!4.34e-10!63;UBERON:0000383!4.34e-10!63;UBERON:0001134!7.28e-10!61;UBERON:0002036!7.28e-10!61;UBERON:0003082!7.28e-10!61;UBERON:0004290!3.87e-09!70;UBERON:0003914!1.52e-08!118;UBERON:0002118!6.04e-08!5;UBERON:0004532!6.04e-08!5;UBERON:0000914!8.41e-08!83;UBERON:0002329!8.41e-08!83;UBERON:0003077!8.41e-08!83;UBERON:0003059!8.41e-08!83;UBERON:0007282!8.41e-08!83;UBERON:0009618!8.41e-08!83;UBERON:0007285!8.41e-08!83;UBERON:0000025!2.71e-07!194;UBERON:0001310!6.32e-07!4;UBERON:0000415!7.56e-07!4;UBERON:0007240!7.56e-07!4;UBERON:0005742!7.56e-07!4;UBERON:0005734!7.56e-07!4;UBERON:0004664!7.56e-07!4;UBERON:0004663!7.56e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;7.78e-13;4!UBERON:0003834;2.48e-11;5!UBERON:0001533;2.48e-11;5!UBERON:0001637;2.94e-10;42!UBERON:0003509;2.94e-10;42!UBERON:0004572;2.94e-10;42!UBERON:0003513;3.24e-08;7!UBERON:0004573;4.22e-07;33!UBERON:0004571;4.22e-07;33!UBERON:0001136;9.23e-07;1!UBERON:0001343;9.23e-07;1!UBERON:0004910;9.23e-07;1!UBERON:0004813;9.23e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,4.03e-14,42;UBERON:0003509,4.03e-14,42;UBERON:0004572,4.03e-14,42;UBERON:0001310,1.41e-12,4;UBERON:0004872,5.39e-12,83;UBERON:0003834,2.44e-11,5;UBERON:0001533,2.44e-11,5;UBERON:0007500,1.86e-09,59;UBERON:0001981,1.86e-09,59;UBERON:0004537,1.86e-09,59;UBERON:0006965,1.86e-09,59;UBERON:0003513,3.21e-08,7;UBERON:0000055,6.15e-08,68;UBERON:0004573,9.43e-08,33;UBERON:0004571,9.43e-08,33;UBERON:0004535,3.38e-07,109;UBERON:0001009,6.23e-07,112;UBERON:0001136,7.15e-07,1;UBERON:0001343,7.15e-07,1;UBERON:0004910,7.15e-07,1;UBERON:0005154,7.15e-07,1;UBERON:0005295,7.15e-07,1;UBERON:0004813,7.15e-07,1;UBERON:0005297,7.15e-07,1;UBERON:0005294,7.15e-07,1;UBERON:0010141,7.15e-07,1;UBERON:0005891,7.15e-07,1 | |||
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| ||
|short_description=p@chr1:163044209..163044226,+ | |||
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Latest revision as of 23:46, 27 July 2015
Short description: | p@chr1:163044209..163044226, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:163044209..163044226, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 1.41e-12 | 4 |
smooth muscle cell of the subclavian artery | 2.44e-11 | 5 |
vascular associated smooth muscle cell | 4.13e-10 | 32 |
smooth muscle cell | 3.21e-07 | 43 |
smooth muscle myoblast | 3.21e-07 | 43 |
androgen binding protein secreting cell | 7.15e-07 | 1 |
seminiferous tubule epithelial cell | 7.15e-07 | 1 |
Sertoli cell | 7.15e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
artery | 4.03e-14 | 42 |
arterial blood vessel | 4.03e-14 | 42 |
arterial system | 4.03e-14 | 42 |
umbilical artery | 1.41e-12 | 4 |
splanchnic layer of lateral plate mesoderm | 5.39e-12 | 83 |
thoracic segment blood vessel | 2.44e-11 | 5 |
subclavian artery | 2.44e-11 | 5 |
epithelial tube open at both ends | 1.86e-09 | 59 |
blood vessel | 1.86e-09 | 59 |
blood vasculature | 1.86e-09 | 59 |
vascular cord | 1.86e-09 | 59 |
trunk blood vessel | 3.21e-08 | 7 |
vessel | 6.15e-08 | 68 |
systemic artery | 9.43e-08 | 33 |
systemic arterial system | 9.43e-08 | 33 |
cardiovascular system | 3.38e-07 | 109 |
circulatory system | 6.23e-07 | 112 |
mesothelium | 7.15e-07 | 1 |
seminiferous tubule of testis | 7.15e-07 | 1 |
epithelium of male gonad | 7.15e-07 | 1 |
epithelial cord | 7.15e-07 | 1 |
sex cord | 7.15e-07 | 1 |
seminiferous tubule epithelium | 7.15e-07 | 1 |
testis sex cord | 7.15e-07 | 1 |
genital ridge | 7.15e-07 | 1 |
primitive sex cord of indifferent gonad | 7.15e-07 | 1 |
coelomic epithelium | 7.15e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.91e-18 | 3 |
leiomyoma | 2.91e-18 | 3 |
benign neoplasm | 7.89e-14 | 4 |