FFCP PHASE1:Hg19::chr22:39096964..39096977,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:39096964..39096977,- to FFCP PHASE1:Hg19::chr22:39096964..39096977,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9929 | |EntrezGene=9929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28953 | |HGNC=28953 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_ENST00000493939_5end | |||
|cluster_id=chr22:39096964..39096977,- | |||
|description=CAGE_peak_3_at_JOSD1_5end | |||
|id=chr22:39096964..39096977,- | |||
|ontology_enrichment_celltype=CL:0002057!1.53e-15!42;CL:0000738!1.56e-14!140;CL:0000766!1.99e-14!76;CL:0000557!3.14e-13!71;CL:0000839!9.66e-13!70;CL:0000860!1.68e-12!45;CL:0002031!1.18e-11!124;CL:0002009!2.14e-11!65;CL:0002194!2.46e-11!63;CL:0000576!2.46e-11!63;CL:0000040!2.46e-11!63;CL:0000559!2.46e-11!63;CL:0000988!5.73e-11!182;CL:0002087!7.11e-11!119;CL:0000037!7.59e-10!172;CL:0000566!7.59e-10!172;CL:0002320!1.37e-09!365;CL:0000048!5.33e-09!430;CL:0002032!1.55e-08!165;CL:0000837!1.55e-08!165;CL:0000134!2.59e-08!358;CL:0000763!3.86e-08!112;CL:0000049!3.86e-08!112;CL:0000723!4.83e-08!436;CL:0000219!5.85e-08!390;CL:0000034!3.21e-07!444;CL:0002371!6.79e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.78e-11;33!CL:0002057;3.78e-11;33!CL:0000473;9.93e-11;39!CL:0000234;9.93e-11;39!CL:0000576;5.14e-10;48!CL:0000766;9.58e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.94e-17,48;CL:0000234,2.94e-17,48;CL:0000766,3.89e-17,72;CL:0000738,1.61e-16,136;CL:0000557,6.82e-16,67;CL:0000860,1.16e-15,42;CL:0002057,1.16e-15,42;CL:0000839,2.33e-15,66;CL:0002009,4.37e-14,61;CL:0002194,4.54e-14,59;CL:0000576,4.54e-14,59;CL:0000040,4.54e-14,59;CL:0000559,4.54e-14,59;CL:0002031,1.72e-13,120;CL:0002087,8.97e-13,115;CL:0000988,1.52e-12,177;CL:0000037,2.27e-11,168;CL:0002320,1.21e-10,361;CL:0000048,2.50e-10,427;CL:0002032,5.94e-10,161;CL:0000837,5.94e-10,161;CL:0000763,9.70e-10,108;CL:0000049,9.70e-10,108;CL:0000134,2.79e-09,354;CL:0000723,2.83e-09,433;CL:0000219,8.36e-09,386;CL:0000034,2.36e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.76e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.97e-12!80;UBERON:0002390!2.95e-11!102;UBERON:0003061!2.95e-11!102;UBERON:0001474!3.19e-11!86;UBERON:0004765!4.32e-11!101;UBERON:0001434!4.32e-11!101;UBERON:0002193!8.89e-11!112;UBERON:0002204!1.21e-09!167;UBERON:0002384!1.23e-09!375;UBERON:0003081!1.59e-09!216;UBERON:0002405!6.62e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.23e-14,76;UBERON:0001434,7.08e-14,100;UBERON:0004765,1.31e-13,90;UBERON:0001474,3.64e-13,82;UBERON:0002390,4.51e-13,98;UBERON:0003061,4.51e-13,98;UBERON:0002193,1.36e-12,108;UBERON:0002204,4.29e-12,167;UBERON:0002405,6.35e-12,93;UBERON:0003081,5.88e-11,203;UBERON:0002384,1.28e-10,371;UBERON:0000926,1.07e-07,315;UBERON:0004120,1.07e-07,315;UBERON:0006603,1.07e-07,315 | |||
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| ||
|short_description=p3@JOSD1 | |||
}} | }} |
Latest revision as of 16:18, 24 September 2015
Short description: | p3@JOSD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_JOSD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -17bp_to_ENST00000493939_5end |
EntrezGene: | JOSD1 |
HGNC: | 28953 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.94e-17 | 48 |
phagocyte | 2.94e-17 | 48 |
myeloid leukocyte | 3.89e-17 | 72 |
leukocyte | 1.61e-16 | 136 |
granulocyte monocyte progenitor cell | 6.82e-16 | 67 |
classical monocyte | 1.16e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-15 | 42 |
myeloid lineage restricted progenitor cell | 2.33e-15 | 66 |
macrophage dendritic cell progenitor | 4.37e-14 | 61 |
monopoietic cell | 4.54e-14 | 59 |
monocyte | 4.54e-14 | 59 |
monoblast | 4.54e-14 | 59 |
promonocyte | 4.54e-14 | 59 |
hematopoietic lineage restricted progenitor cell | 1.72e-13 | 120 |
nongranular leukocyte | 8.97e-13 | 115 |
hematopoietic cell | 1.52e-12 | 177 |
hematopoietic stem cell | 2.27e-11 | 168 |
connective tissue cell | 1.21e-10 | 361 |
multi fate stem cell | 2.50e-10 | 427 |
hematopoietic oligopotent progenitor cell | 5.94e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.94e-10 | 161 |
myeloid cell | 9.70e-10 | 108 |
common myeloid progenitor | 9.70e-10 | 108 |
mesenchymal cell | 2.79e-09 | 354 |
somatic stem cell | 2.83e-09 | 433 |
motile cell | 8.36e-09 | 386 |
stem cell | 2.36e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.23e-14 | 76 |
skeletal system | 7.08e-14 | 100 |
skeletal element | 1.31e-13 | 90 |
bone element | 3.64e-13 | 82 |
hematopoietic system | 4.51e-13 | 98 |
blood island | 4.51e-13 | 98 |
hemolymphoid system | 1.36e-12 | 108 |
musculoskeletal system | 4.29e-12 | 167 |
immune system | 6.35e-12 | 93 |
lateral plate mesoderm | 5.88e-11 | 203 |
connective tissue | 1.28e-10 | 371 |
mesoderm | 1.07e-07 | 315 |
mesoderm-derived structure | 1.07e-07 | 315 |
presumptive mesoderm | 1.07e-07 | 315 |