FFCP PHASE1:Hg19::chr4:77610461..77610547,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:77610461..77610547,+ to FFCP PHASE1:Hg19::chr4:77610461..77610547,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57619 | |EntrezGene=57619 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |HGNC=30422 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TF72 | |UniProt=Q8TF72 | ||
|association_with_transcript=-63bp_to_ENST00000264907,uc011cbz.1_5end | |||
|cluster_id=chr4:77610461..77610547,+ | |||
|description=CAGE_peak_2_at_SHROOM3_5end | |||
|id=chr4:77610461..77610547,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.22e-32!254;CL:0002076!1.79e-09!43;CL:0000223!4.66e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.22e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.15e-30,253;CL:0002076,1.18e-10,42;CL:0000223,1.46e-09,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.80e-21!143;DOID:305!1.46e-20!106;DOID:299!9.82e-09!25;DOID:1749!6.47e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:299;6.59e-09;25!DOID:1749;1.39e-08;14!DOID:305;8.72e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.21e-20,143;DOID:305,4.40e-20,106;DOID:299,4.06e-09,25;DOID:1749,1.71e-08,14;DOID:162,8.61e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.37e-21!169;UBERON:0000925!5.37e-21!169;UBERON:0006595!5.37e-21!169;UBERON:0000475!2.97e-18!365;UBERON:0000468!7.80e-18!659;UBERON:0001007!9.65e-18!155;UBERON:0001555!9.65e-18!155;UBERON:0007026!9.65e-18!155;UBERON:0000062!1.85e-17!511;UBERON:0000481!7.16e-17!347;UBERON:0000064!1.63e-16!219;UBERON:0004921!9.36e-15!129;UBERON:0004185!9.36e-15!129;UBERON:0000466!1.27e-14!126;UBERON:0000467!5.87e-14!625;UBERON:0000464!8.32e-14!104;UBERON:0000480!1.10e-13!626;UBERON:0000077!1.87e-13!130;UBERON:0009569!2.18e-12!113;UBERON:0005177!2.32e-12!107;UBERON:0000922!1.93e-11!612;UBERON:0003104!2.43e-10!238;UBERON:0009142!2.43e-10!238;UBERON:0001048!5.06e-10!168;UBERON:0000923!2.07e-09!604;UBERON:0005291!2.07e-09!604;UBERON:0006598!2.07e-09!604;UBERON:0002532!2.07e-09!604;UBERON:0002050!2.17e-09!605;UBERON:0005423!2.17e-09!605;UBERON:0001041!4.97e-09!98;UBERON:0002100!5.05e-09!216;UBERON:0000063!7.81e-09!97;UBERON:0006554!1.05e-08!44;UBERON:0001004!1.27e-08!72;UBERON:0003102!1.29e-08!95;UBERON:0001008!1.94e-08!45;UBERON:0000924!2.18e-08!173;UBERON:0006601!2.18e-08!173;UBERON:0004121!5.23e-08!169;UBERON:0002553!7.22e-08!70;UBERON:0000119!8.90e-08!312;UBERON:0000483!9.27e-08!309;UBERON:0005409!1.36e-07!35;UBERON:0005153!1.88e-07!37;UBERON:0000058!1.95e-07!26;UBERON:0005911!2.23e-07!82;UBERON:0005178!3.35e-07!34;UBERON:0002224!3.35e-07!34;UBERON:0005181!3.83e-07!35;UBERON:0000915!4.44e-07!52;UBERON:0005631!5.38e-07!14;UBERON:0000158!5.38e-07!14;UBERON:0008947!6.07e-07!38;UBERON:0003258!6.07e-07!38;UBERON:0004923!6.80e-07!57;UBERON:0002113!9.86e-07!27;UBERON:0003918!9.86e-07!27;UBERON:0005095!9.86e-07!27;UBERON:0007687!9.86e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.84e-10;33!UBERON:0005409;4.24e-09;22!UBERON:0006554;1.14e-08;30!UBERON:0001008;1.14e-08;30!UBERON:0001555;9.19e-08;54!UBERON:0000160;6.14e-07;17!UBERON:0002113;6.45e-07;24!UBERON:0011143;6.45e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.98e-20,160;UBERON:0000925,3.98e-20,160;UBERON:0006595,3.98e-20,160;UBERON:0001007,1.05e-16,145;UBERON:0001555,1.05e-16,145;UBERON:0007026,1.05e-16,145;UBERON:0005177,5.69e-15,101;UBERON:0004921,1.46e-14,118;UBERON:0009569,5.35e-13,112;UBERON:0006554,5.82e-10,47;UBERON:0001008,2.02e-09,48;UBERON:0001041,2.89e-09,87;UBERON:0011216,1.28e-08,223;UBERON:0001004,1.79e-08,74;UBERON:0005409,2.69e-08,25;UBERON:0001048,9.73e-08,160;UBERON:0003102,1.11e-07,99;UBERON:0005172,1.32e-07,54;UBERON:0005173,1.32e-07,54;UBERON:0005631,1.72e-07,14;UBERON:0000158,1.72e-07,14;UBERON:0002113,1.87e-07,26;UBERON:0003918,1.87e-07,26;UBERON:0011143,1.87e-07,26;UBERON:0005095,1.87e-07,26;UBERON:0007687,1.87e-07,26;UBERON:0005178,2.48e-07,34;UBERON:0002224,2.48e-07,34;UBERON:0005181,2.82e-07,35;UBERON:0002100,2.85e-07,199;UBERON:0000160,3.40e-07,17;UBERON:0002417,3.70e-07,60;UBERON:0000916,3.70e-07,60;UBERON:0004923,4.50e-07,66;UBERON:0005911,7.27e-07,82;UBERON:0000915,8.89e-07,52 | |||
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|phase1_expression=0.726713517082227,0.856402095563933,0.140954404095971,2.00146596706261,1.34088328328186,2.61701557230111,2.53299878168311,0,0.261185628199839,5.89761447603621,9.76921635161399,8.95609625733706,10.2869121509097,0.495065411840187,0.331397375727916,1.34465029290355,0.602694528023977,0,0.487932798790507,3.69363174230364,5.50801866359483,1.88072832886853,2.28988789704845,4.10623275218653,2.63639543149086,0,0,0,0,0,0.154816123316076,5.51652734687356,9.0361775633475,4.43704812200145,0.774672005803016,0.710846162437108,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.42938867502708,0.361439152384566,1.00267582127178,1.01392563272577,0,1.94653948121054,3.30871860074237,3.32594096193846,4.12823492757692,1.5062593682237,13.8432209551166,5.93255108455087,0,0,0,0,0,0,0.596287222100115,0,0,2.26123176769604,1.67799774483962,0.550236083880135,0.835979866147242,0.516833518338658,0.35576626268671,1.33888245105868,0.402829317109147,0,0,0,0.81014194788176,1.96459402224975,1.12264686313085,2.47745257063309,1.53316637465883,0.949265659568129,0.366403487860815,0,0,7.41359888642308,3.47880366186723,2.02608818663328,1.19168262731897,2.29469296599051,1.06400514659507,3.36406560085384,0,1.2333377420858,1.8672662123986,0.67355336034844,1.47115712802113,1.05950199351452,0,1.17160715916898,1.87296046098192,4.56377457235559,2.39117888882882,3.87533845524424,1.45685649931318,1.82586048712923,3.47062091133319,4.05353247128834,2.89312187292143,1.18800285728205,0.494533858557114,0.910161361938026,0,2.02003336744879,2.87772595705518,2.49357703935765,0.438977620880838,1.5324389789951,1.80285670687916,1.36118619792025,8.79009214875424,2.13557388818567,2.7551147150743,6.90209520994125,2.78241828943785,7.72921620136887,5.02515512095292,10.4641325989585,8.37958244386308,8.83518209854401,4.32634523618807,3.23292113637624,5.32514388774922,4.23158812556089,9.6649537616978,4.83152132908242,2.45471508531751,6.30970109855808,9.63592278423804,13.5180363687915,9.17932148669195,9.32949495138334,7.0649838245176,11.3142981313507,0,1.92972281457866,5.52539685409922,0.928735856063958,0.721879481669586,2.48444280083672,2.02301628093722,0.723033089650446,3.19852520923942,3.4860711054785,3.79632990577755,1.34831308160164,3.13954344200554,2.30848294167834,0,1.40241773803446,4.115740113314,1.47008711385542,10.1404027857465,3.9313088667105,2.36315962672562,0,1.8448265781467,1.88724591328378,7.02401826615204,5.62008766288098,5.93120937228622,4.72201070308501,0.977424915930974,2.07986957055916,2.88662684050547,1.62302566965108,2.93521735589554,0,0.462985512576611,0.190254152234598,10.2726571734706,3.43394464837949,0,0,0,1.87467667973554,2.51973192298289,5.38745369521069,4.83616022595381,9.30028603244678,17.6356032415997,0,0,0,0.144119953416961,0.75745460055828,0.317489471460845,0,0,3.4214489204541,0.411309970813294,0,0,2.35475277125258,1.30788020649984,0.51336800074665,1.80980402060889,0,0,6.11657668145202,8.32059495290929,0.257207374262142,1.41849132023278,0.266422179016099,1.14382394926518,0,3.29296134712308,0.65147236858747,1.06617584622764,0,2.71295439353627,0,1.79951384127703,0,0,0,0.239624855491583,1.14861935834114,0,0.434343920002738,0.410952645100767,0.537182889719687,0,0,0,0,0.254094624222463,2.60279707715243,1.54657762555539,2.01019518401218,0.637938751653163,0,0,0,0.613457458595699,0,0.271265023699736,2.70362119990049,3.39015078714607,2.20783381047509,2.92853537481783,1.50473049863859,4.5481500811197,0,1.32845119707087,1.10621501125022,3.12781012085098,0.195801157462741,1.02943027143257,0,0,0.106727557803444,3.03127571446259,13.3148351608398,6.04780586659361,1.24053903909388,10.4354141835882,3.36792113319688,0.384417447767103,4.60536524160033,2.2519548960105,4.45254199334973,1.07946785661859,0.887808626565635,0.410635780069046,0,0.697262270759755,2.77976734060731,4.81215528727884,6.81399318125633,0.803701137152247,0.364182336013434,0.524497659837696,12.6335891614075,5.62211960862228,15.6869953835371,13.1525302187935,4.96092655796516,5.68666920354483,0.170093705276516,3.88648648983851,0,4.06419656315779,3.01013864312912,13.7633187444321,16.6215201785745,8.2833659247206,0,0,2.05160100093111,6.56029291399411,0.325378394664303,2.06082023295445,1.55668090191184,0.82509499920588,6.3169209179579,5.20048196829217,0,0.386682873168488,0.616194468458578,0.15350367472613,0.827019434907183,0.107420244868274,0.290033387828457,0.681813019328807,0.801288320820636,1.81813406897076,3.0750410778417,8.55005173713714,3.2370489873776,0.464845549297286,0.94443704049192,1.3940745403212,0,0,0,0.74129687641568,0.572499546967965,0.744316738719335,0.632758849437452,1.5250415513906,3.07077349573601,1.71175595213568,0.318203247925937,0,6.47540847299933,1.64722217841633,1.88499843753098,0.404364963146632,0,1.26377536871694,6.82687234725426,0.24371348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| ||
|short_description=p2@SHROOM3 | |||
}} | }} |
Latest revision as of 18:13, 18 September 2015
Short description: | p2@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHROOM3_5end |
Coexpression cluster: | NA |
Association with transcript: | -63bp_to_ENST00000264907, uc011cbz.1_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | Q8TF72 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.15e-30 | 253 |
endo-epithelial cell | 1.18e-10 | 42 |
endodermal cell | 1.46e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.21e-20 | 143 |
carcinoma | 4.40e-20 | 106 |
adenocarcinoma | 4.06e-09 | 25 |
squamous cell carcinoma | 1.71e-08 | 14 |
cancer | 8.61e-07 | 235 |