FFCP PHASE1:Hg19::chr5:139555310..139555313,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:139555310..139555313,+ to FFCP PHASE1:Hg19::chr5:139555310..139555313,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:139555310..139555313,+ | |||
|coexpression_cluster_id=C467 | |||
|description=CAGE_peak_at_chr5:139555310..139555313,+ | |||
|id=chr5:139555310..139555313,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.02e-18!42;CL:0002194!4.13e-18!63;CL:0000576!4.13e-18!63;CL:0000040!4.13e-18!63;CL:0000559!4.13e-18!63;CL:0002009!3.06e-17!65;CL:0000839!5.79e-17!70;CL:0000557!2.94e-16!71;CL:0000860!5.33e-16!45;CL:0000766!9.78e-15!76;CL:0000048!1.46e-12!430;CL:0000763!3.82e-12!112;CL:0000049!3.82e-12!112;CL:0000723!1.22e-11!436;CL:0000034!6.19e-11!444;CL:0002320!1.10e-10!365;CL:0000134!1.46e-09!358;CL:0002371!2.00e-09!591;CL:0000548!1.50e-08!679;CL:0000004!1.50e-08!679;CL:0000255!1.50e-08!679;CL:0000219!3.20e-08!390;CL:0000012!5.23e-08!682;CL:0000003!1.04e-07!722;CL:0000144!1.99e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.59e-22;39!CL:0000234;3.59e-22;39!CL:0000860;1.53e-18;33!CL:0002057;1.53e-18;33!CL:0000576;2.16e-17;48!CL:0000766;3.51e-13;69!CL:0000235;4.08e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,3.26e-34,59;CL:0000576,3.26e-34,59;CL:0000040,3.26e-34,59;CL:0000559,3.26e-34,59;CL:0002009,1.06e-32,61;CL:0000473,4.06e-31,48;CL:0000234,4.06e-31,48;CL:0000839,4.65e-31,66;CL:0000557,2.05e-30,67;CL:0000766,3.09e-29,72;CL:0000860,1.04e-24,42;CL:0002057,1.04e-24,42;CL:0000763,1.46e-18,108;CL:0000049,1.46e-18,108;CL:0002087,7.12e-13,115;CL:0002031,1.04e-12,120;CL:0000048,8.10e-12,427;CL:0000738,1.92e-11,136;CL:0000723,2.46e-11,433;CL:0002320,4.85e-11,361;CL:0000034,1.03e-10,441;CL:0000134,7.37e-10,354;CL:0002032,3.35e-09,161;CL:0000837,3.35e-09,161;CL:0000037,2.30e-08,168;CL:0000235,2.66e-08,6;CL:0000988,4.95e-08,177;CL:0000219,7.25e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;5.60e-19;42!CL:0000049;9.46e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.33e-16!80;UBERON:0002405!6.64e-16!115;UBERON:0001474!1.12e-13!86;UBERON:0002193!5.37e-13!112;UBERON:0002390!5.67e-13!102;UBERON:0003061!5.67e-13!102;UBERON:0004765!4.60e-12!101;UBERON:0001434!4.60e-12!101;UBERON:0002384!7.04e-11!375;UBERON:0002204!8.89e-11!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.51e-30,76;UBERON:0001474,8.81e-27,82;UBERON:0004765,2.85e-26,90;UBERON:0002390,1.86e-25,98;UBERON:0003061,1.86e-25,98;UBERON:0002405,1.36e-23,93;UBERON:0002193,3.30e-23,108;UBERON:0001434,2.57e-22,100;UBERON:0003081,2.91e-18,203;UBERON:0002204,4.89e-18,167;UBERON:0000926,1.91e-11,315;UBERON:0004120,1.91e-11,315;UBERON:0006603,1.91e-11,315;UBERON:0002384,1.07e-10,371 | |||
|phase1_expression=0,1.92690471501885,0.140954404095971,2.00146596706261,4.02264984984559,1.74467704820074,0,0,0.783556884599516,0.491467873003018,0,0.436882744260345,0,0.247532705920093,4.97096063591874,0,0.602694528023977,1.46062018077475,0.975865597581014,0.738726348460727,2.44800829493104,0.313454721478088,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0.77408061658038,0.919421224478927,2.10844143144775,0.739508020333575,0,0,0,0.553995408531877,0.601633342410425,0,2.46307021663917,2.26725566213286,5.40908692031792,0.581592955118259,2.64513160582167,0.727752183563449,1.85943229524548,2.05583944010913,4.64559556342655,4.02769349251011,0.768482119587302,2.12834006899727,2.06847408441971,1.93645405075148,2.70852973188684,1.12945403725563,3.0019676506363,2.24723484445085,0.918251677112708,0.962787081228281,1.91801137739712,2.63881040149373,0.997318288108159,1.27867425159808,2.90209238628584,8.5107783703671,5.60540024096017,0.75374599577023,2.08593167368081,1.95469960234605,0.605399502633369,1.10483290796269,2.21523671208619,2.5350634357433,1.70083439972035,2.51590374610051,0.673971786878971,0.600707571366025,0.16072558669708,0,4.97291692997725,1.64397738388171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786021525498329,0.205601498999509,0.501559486172034,0,0,1.94826728407911,0.111410456885174,0,0.221533894583621,0.270803863765016,0.25618263945135,0.260118695119756,0,0.276350017785848,0.289803085735052,0.14828656316206,0,0,0,0.383220493601921,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0.289648807765598,0,0,1.53435074212236,4.69870898099936,1.00267582127178,0.144846518960824,0.795285947051099,0,0.0945348171640679,0,0.087834785693126,0,0.364295288292542,0,1.62273696827342,2.61194605948901,1.06366368415092,0,0,0.371457501329565,0.596287222100115,0,0,0,0,0,0.208994966536811,0.516833518338658,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0.673588117878509,0,0,0,0,0,0,0.436094052142534,0.993943903390637,0.25326102332916,0.397227542439656,0,0.354668382198357,0,0,0.49333509683432,0.622422070799533,1.21239604862719,1.63461903113459,1.21085942115945,0,0.468642863667593,0,0.570471821544449,0.149448680551801,0.469737994575059,0.323745888736263,0.702254033511242,0.61246251376468,0.245668634623536,0.206651562351531,1.18800285728205,0.989067717114227,0,3.59309070908119,0,0,0,0,0.612975591598039,0.300476117813194,0.340296549480063,0.358779271377724,0.640672166455702,0.211931901159562,0,1.03052529238439,0.257640540045629,1.11670113798954,0,0.779496041289589,0,0.276149695926898,1.77810662500693,0,0.604512589365842,0,0.386521706326594,0.272746120590835,0,0,0.132529768321485,0.116193942869518,0.207322110030741,0.504641701751257,0.36497735907583,1.56449532329816,0.643240938192885,0,0.464367928031979,2.16563844500876,0.354920400119532,0.168584690078102,0.964044119533928,0.661763836394364,0.871517776369625,0,0.808987848960987,0.196221465125346,0,0,1.40241773803446,0,2.94017422771084,0,0,0.590789906681404,0,0.245976877086227,0.857839051492628,0.109750285408626,0,0,0,0,1.03993478527958,0,0.811512834825538,0.352226082707465,0.433099343283221,0.462985512576611,0.380508304469197,0,0,3.93947209739836,2.57404691653161,1.63494278517601,0,0.335964256397719,0.283550194484773,0,0,0,0,0.792435906119034,0.621984346622316,0,1.38866676769018,0.317489471460845,0.381988425558278,0,0,0.308482478109971,0.600686115687835,0,0.336393253036082,5.66748089483264,0.2933531432838,0.646358578788889,7.15312891703765,0,0.26593811658487,1.04007436911366,0.257207374262142,1.41849132023278,0,0.57191197463259,1.08524321078289,0.823240336780769,0.325736184293735,1.06617584622764,0,0.602878754119172,0,0,14.5948536769429,8.03611346291402,0,0.958499421966331,0,0,0.723906533337896,0.205476322550383,0,0.448340575974109,0,0.215627574859517,0.256686072559497,0,1.30139853857622,0.773288812777695,0.335032530668698,0,2.24702107184155,0,0,0.613457458595699,0,1.62759014219841,1.45579603071565,1.24900292158013,2.68094105557689,0.35142424497814,0.601892199455438,2.27407504055985,0,0,0.184369168541703,0.0868836144680828,5.286631251494,0.686286847621712,0.206768026122887,0.215714200818617,0.106727557803444,1.5156378572313,0,0.30239029332968,0.992431231275107,0,0.841980283299221,1.02511319404561,0.511707249066704,0.64341568457443,2.96836132889982,0,0,0,0,0.464841513839837,0.120859449591622,0.200506470303285,0.0920809889358963,0.34444334449382,0.364182336013434,0.131124414959424,0,0.308061348417659,0,0,0.316654886678627,3.4120015221269,1.53084334748864,0.215915916102139,0,0,0,0.509752546090077,0,0,0,0.261435451024901,0.256450125116389,0,0,0.515205058238611,0,0,0.574265537996172,0,0,0.096670718292122,1.69453478826109,1.5350367472613,0.551346289938122,0.214840489736547,0.580066775656914,0.170453254832202,0.0890320356467374,0.330569830721956,0,0.255225424989168,0.2023155617111,1.39453664789186,0,0,0,1.06461206063404,0,0.18532421910392,0.143124886741991,0,0,0.38126038784765,1.02359116524534,0.42793898803392,0,0.78494864019923,0.539617372749944,1.37268514868027,0,0,1.58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| ||
|short_description=p@chr5:139555310..139555313,+ | |||
}} | }} |
Latest revision as of 10:28, 30 July 2015
Short description: | p@chr5:139555310..139555313, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:139555310..139555313, + |
Coexpression cluster: | C467_CD14_Monocytederived_Mesenchymal_Macrophage_Dendritic_mucinous_liver |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 3.26e-34 | 59 |
monocyte | 3.26e-34 | 59 |
monoblast | 3.26e-34 | 59 |
promonocyte | 3.26e-34 | 59 |
macrophage dendritic cell progenitor | 1.06e-32 | 61 |
defensive cell | 4.06e-31 | 48 |
phagocyte | 4.06e-31 | 48 |
myeloid lineage restricted progenitor cell | 4.65e-31 | 66 |
granulocyte monocyte progenitor cell | 2.05e-30 | 67 |
myeloid leukocyte | 3.09e-29 | 72 |
classical monocyte | 1.04e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.04e-24 | 42 |
myeloid cell | 1.46e-18 | 108 |
common myeloid progenitor | 1.46e-18 | 108 |
nongranular leukocyte | 7.12e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 1.04e-12 | 120 |
multi fate stem cell | 8.10e-12 | 427 |
leukocyte | 1.92e-11 | 136 |
somatic stem cell | 2.46e-11 | 433 |
connective tissue cell | 4.85e-11 | 361 |
stem cell | 1.03e-10 | 441 |
mesenchymal cell | 7.37e-10 | 354 |
hematopoietic oligopotent progenitor cell | 3.35e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.35e-09 | 161 |
hematopoietic stem cell | 2.30e-08 | 168 |
macrophage | 2.66e-08 | 6 |
hematopoietic cell | 4.95e-08 | 177 |
motile cell | 7.25e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.51e-30 | 76 |
bone element | 8.81e-27 | 82 |
skeletal element | 2.85e-26 | 90 |
hematopoietic system | 1.86e-25 | 98 |
blood island | 1.86e-25 | 98 |
immune system | 1.36e-23 | 93 |
hemolymphoid system | 3.30e-23 | 108 |
skeletal system | 2.57e-22 | 100 |
lateral plate mesoderm | 2.91e-18 | 203 |
musculoskeletal system | 4.89e-18 | 167 |
mesoderm | 1.91e-11 | 315 |
mesoderm-derived structure | 1.91e-11 | 315 |
presumptive mesoderm | 1.91e-11 | 315 |
connective tissue | 1.07e-10 | 371 |