FFCP PHASE1:Hg19::chr8:143781405..143781425,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:143781405..143781425,+ to FFCP PHASE1:Hg19::chr8:143781405..143781425,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54742 | |EntrezGene=54742 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24225 | |HGNC=24225 | ||
|TSSclassifier=strong | |||
|UniProt=Q17RY6 | |UniProt=Q17RY6 | ||
|association_with_transcript=-103bp_to_ENST00000292430,ENST00000561179,NM_001160354,NM_001160355,NM_017527,uc011ljv.1,uc011ljw.1,uc011ljx.1_5end | |||
|cluster_id=chr8:143781405..143781425,+ | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_5_at_LY6K_5end | |||
|id=chr8:143781405..143781425,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.82e-13!45;CL:0000066!8.98e-13!254;CL:0002057!3.65e-11!42;CL:0000076!5.89e-11!62;CL:0000548!2.18e-08!679;CL:0000004!2.18e-08!679;CL:0000255!2.18e-08!679;CL:0000012!4.37e-08!682;CL:0000063!8.33e-08!578;CL:0000071!1.47e-07!18;CL:0002546!1.47e-07!18;CL:0002194!6.81e-07!63;CL:0000576!6.81e-07!63;CL:0000040!6.81e-07!63;CL:0000559!6.81e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.01e-24;33!CL:0002057;5.01e-24;33!CL:0000473;3.41e-15;39!CL:0000234;3.41e-15;39!CL:0000576;1.55e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.69e-19,42;CL:0002057,3.69e-19,42;CL:0000473,4.40e-16,48;CL:0000234,4.40e-16,48;CL:0002194,8.19e-12,59;CL:0000576,8.19e-12,59;CL:0000040,8.19e-12,59;CL:0000559,8.19e-12,59;CL:0002009,2.88e-11,61;CL:0000839,4.75e-10,66;CL:0000557,7.89e-10,67;CL:0000066,1.30e-09,253;CL:0000766,8.06e-09,72;CL:0000076,6.28e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002057;1.20e-14;42!UBERON:0008947;1.78e-11;29 | |||
|ontology_enrichment_disease=DOID:1749!2.89e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.51e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.51e-11,106;DOID:1749,6.99e-10,14;DOID:0050687,1.22e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!9.37e-11!9;UBERON:0001557!4.14e-08!19;UBERON:0000467!7.67e-08!625;UBERON:0000480!9.58e-08!626;UBERON:0001986!1.47e-07!18;UBERON:0004638!1.47e-07!18;UBERON:0004852!1.47e-07!18;UBERON:0000468!2.35e-07!659;UBERON:0001004!3.76e-07!72;UBERON:0000923!5.62e-07!604;UBERON:0005291!5.62e-07!604;UBERON:0006598!5.62e-07!604;UBERON:0002532!5.62e-07!604;UBERON:0000926!5.65e-07!448;UBERON:0004120!5.65e-07!448;UBERON:0006603!5.65e-07!448;UBERON:0002050!6.93e-07!605;UBERON:0005423!6.93e-07!605;UBERON:0004119!7.77e-07!169;UBERON:0000925!7.77e-07!169;UBERON:0006595!7.77e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.76e-25;9!UBERON:0001557;4.76e-25;9!UBERON:0000072;5.73e-09;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.02e-25,9;UBERON:0001557,9.08e-16,19;UBERON:0000072,1.27e-09,47;UBERON:0008947,1.48e-09,38;UBERON:0003258,1.48e-09,38;UBERON:0002371,4.22e-09,76;UBERON:0001474,4.45e-08,82;UBERON:0000065,6.83e-08,54;UBERON:0004765,8.72e-08,90;UBERON:0001434,3.09e-07,100 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0.37129905888014,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0.464448369948228,3.67768489791571,0.6024118375565,0.739508020333575,0,0,0.293600439334847,0,0.200544447470142,0.434021741431704,0,0,0.257575567634187,0.581592955118259,2.64513160582167,0.485168122375632,0.232429036905685,4.11167888021826,0,1.43846196161075,2.56160706529101,1.41889337933151,1.72372840368309,1.29096936716765,1.35426486594342,0.376484679085209,4.91231070104122,0.224723484445085,1.53041946185451,2.24650318953266,0,0,2.19410023383795,0,2.03146467040009,3.97169657283798,2.4912889959823,1.25624332628372,3.12889751052121,0.868755378820466,3.02699751316684,5.15588690382591,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0,0.0945348171640679,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0.596287222100115,1.72046919021225,0.347140501607594,1.69592382577203,1.25849830862972,1.37559020970034,0.208994966536811,0,0,0,0.402829317109147,0.760272105718513,0,0.367663080345869,0,0.357198913136319,0,0.225222960966644,1.53316637465883,0.949265659568129,0.366403487860815,0,0,0.872188104285069,0.496971951695318,0.25326102332916,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0.570471821544449,0.149448680551801,0.23486899728753,0.323745888736263,0.421352420106746,0.61246251376468,0.245668634623536,0.103325781175765,0,0,0,0,1.0100166837244,0.125118519871964,0,0.438977620880838,0.30648779579902,0.150238058906597,0.453728732640084,0.179389635688862,0.213557388818567,0,1.80054657650641,0.309157587715317,0,0.18611685633159,0.168776332241266,0,0,0,0,0,0.201504196455281,0.339121184620975,0.386521706326594,1.36373060295417,0.286804595389004,0,0,0.116193942869518,0,0,0,0,0,1.38134921352481,1.85747171212792,0.721879481669586,8.51808960286876,11.2951742352328,10.6044853148732,9.81616357318306,11.5476105368975,11.6262603364437,10.2471794201725,14.3241669541503,8.84918460976698,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0,0,0.439001141634502,1.1240175325762,1.91005047582099,0.370353780634118,0.651616610620649,0,0,0,0,0.577465791044295,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.567100388969546,1.34337784054272,1.74380363108377,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2933531432838,0,0,0,0,0,0.514414748524284,1.41849132023278,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,1.50051156317903,0.271265023699736,0,0.178428988797162,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,0,0.604780586659361,0.248107807818777,0,0,0,0,0,0,0,0.177561725313127,0,0,0.232420756919918,0,0,0.276242966807689,0,0,0,0.451199612907412,0,0,0,0,0,0.340187410553031,0.431831832204279,1.54227252690289,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0,0,0,0,0.650060246036521,0,0,0.770243085573222,0.307007349452259,0.137836572484531,0,0,0.0852266274161009,0,0.165284915360978,0,0.255225424989168,0.4046311234222,0,0,0,0.308033580176089,0,0,0,0.429374660225974,0,0.316379424718726,0,0.255897791311334,0,0.318203247925937,0.78494864019923,0,0,0,0.808729926293264,0,0,0.48763373908959,0,0,0,0.141405431953713,1.13008116620243,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0.354761064070598,0,0,0.379473173765715,0,0.192444225451024,0,0,0.188287601553558,1.29151611801369,0,1.33029046061003,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0.338583555603207,0.1605880751037,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0.593929361665277,0.307160702099232,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0.511572370226872,0.0986434056369336,0,0,0,0,0,0,0,0,1.0241410345695,3.0510438035132,0,0,0,0,0,0,0,0,0,0,1.30726156222788,0.83654246567162,0.0769502585037971,0,0,0,0.54323685961004,0.638002319463839,0,1.06606955203727,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0.995261931078505,0,0,0,0,0,0.067401132980677,0,0,0,0.586993856796269,0,0,0,0,0.126373159256976,0.300646838828985,0,0.664653872707185,1.323967823502,0.313932918407225,1.19472429772959,0,0,0.520679215005393,1.37189356380129,1.48000651186684,0,2.23581842213102,11.9977850798466,4.82389492768825,9.19693118995943,0.775912131907355,0,0,2.87788041758177,0,0,2.54216797555244,0.400794101257669,0,0.799238438328521,0,0,0,0,0.869767748958028,1.17847017308398,0,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,3.80161211469863,0,0.959575986597226,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0.124980407962107,0,0,3.05845565607623,0,0,0,0,0,0.757612021100357,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60011105865261,0,0,0,0.192619830407303,0,0,0,0.231522474323834,1.46842022703881,0,0,0,0.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| ||
|short_description=p5@LY6K | |||
}} | }} |
Latest revision as of 21:13, 16 September 2015
Short description: | p5@LY6K |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LY6K_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | -103bp_to_ENST00000292430, ENST00000561179, NM_001160354, NM_001160355, NM_017527, uc011ljv.1, uc011ljw.1, uc011ljx.1_5end |
EntrezGene: | LY6K |
HGNC: | 24225 |
UniProt: | Q17RY6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.69e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.69e-19 | 42 |
defensive cell | 4.40e-16 | 48 |
phagocyte | 4.40e-16 | 48 |
monopoietic cell | 8.19e-12 | 59 |
monocyte | 8.19e-12 | 59 |
monoblast | 8.19e-12 | 59 |
promonocyte | 8.19e-12 | 59 |
macrophage dendritic cell progenitor | 2.88e-11 | 61 |
myeloid lineage restricted progenitor cell | 4.75e-10 | 66 |
granulocyte monocyte progenitor cell | 7.89e-10 | 67 |
epithelial cell | 1.30e-09 | 253 |
myeloid leukocyte | 8.06e-09 | 72 |
squamous epithelial cell | 6.28e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.02e-25 | 9 |
upper respiratory tract | 9.08e-16 | 19 |
segment of respiratory tract | 1.27e-09 | 47 |
respiratory primordium | 1.48e-09 | 38 |
endoderm of foregut | 1.48e-09 | 38 |
bone marrow | 4.22e-09 | 76 |
bone element | 4.45e-08 | 82 |
respiratory tract | 6.83e-08 | 54 |
skeletal element | 8.72e-08 | 90 |
skeletal system | 3.09e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.51e-11 | 106 |
squamous cell carcinoma | 6.99e-10 | 14 |
cell type cancer | 1.22e-08 | 143 |