FFCP PHASE1:Mm9::chr13:118009391..118009444,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr13:118009391..118009444,+ to FFCP PHASE1:Mm9::chr13:118009391..118009444,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=13723 | |EntrezGene=13723 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=33 | |||
|TSSclassifier=NA | |||
|UniProt=P21995 | |UniProt=P21995 | ||
|association_with_transcript=0bp_to_ENSMUST00000022242_5end | |||
|cluster_id=chr13:118009391..118009444,+ | |||
|description=CAGE_peak_2_at_Emb_5end | |||
|id=chr13:118009391..118009444,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.08e-07!11;CL:0000827!1.08e-07!11;CL:0000838!4.36e-07!12;CL:0000791!5.73e-07!9;CL:0000789!5.73e-07!9;CL:0002420!5.73e-07!9;CL:0002419!5.73e-07!9;CL:0000790!5.73e-07!9;CL:0000542!6.09e-07!13;CL:0000051!6.09e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,7.57e-08,11;CL:0000827,7.57e-08,11;CL:0000838,3.16e-07,12;CL:0000791,4.19e-07,9;CL:0000789,4.19e-07,9;CL:0002420,4.19e-07,9;CL:0002419,4.19e-07,9;CL:0000790,4.19e-07,9;CL:0000542,4.46e-07,13;CL:0000051,4.46e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!2.63e-18!94;UBERON:0007811!7.10e-18!86;UBERON:0000475!2.89e-10!200;UBERON:0002370!5.09e-10!23;UBERON:0000974!5.09e-10!23;UBERON:0004807!5.09e-10!23;UBERON:0005058!5.09e-10!23;UBERON:0003351!5.09e-10!23;UBERON:0009113!5.09e-10!23;UBERON:0003295!5.09e-10!23;UBERON:0009722!5.09e-10!23;UBERON:0005562!5.09e-10!23;UBERON:0007690!5.09e-10!23;UBERON:0003408!1.19e-09!24;UBERON:0006562!1.46e-09!24;UBERON:0001557!1.46e-09!24;UBERON:0001042!1.46e-09!24;UBERON:0008814!1.46e-09!24;UBERON:0009145!1.46e-09!24;UBERON:0000065!1.46e-09!41;UBERON:0000072!1.72e-09!27;UBERON:0001004!2.32e-09!42;UBERON:0004177!5.31e-09!29;UBERON:0000033!5.93e-09!63;UBERON:0003056!8.09e-08!49;UBERON:0002346!8.58e-08!71;UBERON:0003075!8.58e-08!71;UBERON:0007284!8.58e-08!71;UBERON:0000063!1.26e-07!35;UBERON:0000955!1.98e-07!50;UBERON:0006238!1.98e-07!50;UBERON:0002616!2.48e-07!49;UBERON:0001049!8.09e-07!52;UBERON:0005068!8.09e-07!52;UBERON:0006241!8.09e-07!52;UBERON:0007135!8.09e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007811,2.81e-11,36;UBERON:0000153,1.15e-10,43;UBERON:0002370,1.31e-10,23;UBERON:0000974,1.31e-10,23;UBERON:0004807,1.31e-10,23;UBERON:0005058,1.31e-10,23;UBERON:0003351,1.31e-10,23;UBERON:0009113,1.31e-10,23;UBERON:0003295,1.31e-10,23;UBERON:0009722,1.31e-10,23;UBERON:0005562,1.31e-10,23;UBERON:0007690,1.31e-10,23;UBERON:0003408,3.24e-10,24;UBERON:0006562,4.02e-10,24;UBERON:0001557,4.02e-10,24;UBERON:0001042,4.02e-10,24;UBERON:0008814,4.02e-10,24;UBERON:0009145,4.02e-10,24;UBERON:0000072,4.99e-10,27;UBERON:0000065,8.08e-10,41;UBERON:0001004,1.30e-09,42;UBERON:0004177,1.66e-09,29;UBERON:0005057,1.66e-09,29;UBERON:0002346,3.03e-08,64;UBERON:0003075,3.03e-08,64;UBERON:0007284,3.03e-08,64;UBERON:0003056,8.51e-08,49;UBERON:0000073,2.54e-07,54;UBERON:0010371,3.59e-07,73;UBERON:0000077,7.52e-07,35 | |||
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| ||
|short_description=p2@Emb | |||
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Latest revision as of 03:46, 27 September 2015
Short description: | p2@Emb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Emb_5end |
Coexpression cluster: | MCL_coexpression_mm9:33 |
Association with transcript: | 0bp_to_ENSMUST00000022242_5end |
EntrezGene: | Emb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 7.57e-08 | 11 |
pro-T cell | 7.57e-08 | 11 |
lymphoid lineage restricted progenitor cell | 3.16e-07 | 12 |
mature alpha-beta T cell | 4.19e-07 | 9 |
alpha-beta T cell | 4.19e-07 | 9 |
immature T cell | 4.19e-07 | 9 |
mature T cell | 4.19e-07 | 9 |
immature alpha-beta T cell | 4.19e-07 | 9 |
lymphocyte | 4.46e-07 | 13 |
common lymphoid progenitor | 4.46e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
craniocervical region | 2.81e-11 | 36 |
anterior region of body | 1.15e-10 | 43 |
thymus | 1.31e-10 | 23 |
neck | 1.31e-10 | 23 |
respiratory system epithelium | 1.31e-10 | 23 |
hemolymphoid system gland | 1.31e-10 | 23 |
pharyngeal epithelium | 1.31e-10 | 23 |
thymic region | 1.31e-10 | 23 |
pharyngeal gland | 1.31e-10 | 23 |
entire pharyngeal arch endoderm | 1.31e-10 | 23 |
thymus primordium | 1.31e-10 | 23 |
early pharyngeal endoderm | 1.31e-10 | 23 |
gland of gut | 3.24e-10 | 24 |
pharynx | 4.02e-10 | 24 |
upper respiratory tract | 4.02e-10 | 24 |
chordate pharynx | 4.02e-10 | 24 |
pharyngeal arch system | 4.02e-10 | 24 |
pharyngeal region of foregut | 4.02e-10 | 24 |
segment of respiratory tract | 4.99e-10 | 27 |
respiratory tract | 8.08e-10 | 41 |
respiratory system | 1.30e-09 | 42 |
hemopoietic organ | 1.66e-09 | 29 |
immune organ | 1.66e-09 | 29 |
neurectoderm | 3.03e-08 | 64 |
neural plate | 3.03e-08 | 64 |
presumptive neural plate | 3.03e-08 | 64 |
pre-chordal neural plate | 8.51e-08 | 49 |
regional part of nervous system | 2.54e-07 | 54 |
ecto-epithelium | 3.59e-07 | 73 |
mixed endoderm/mesoderm-derived structure | 7.52e-07 | 35 |