FFCP PHASE1:Mm9::chr3:95478057..95478076,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr3:95478057..95478076,- to FFCP PHASE1:Mm9::chr3:95478057..95478076,-: NSchange) |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=33 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:95478057..95478076,- | |||
|description=CAGE_peak_at_chr3:95478057..95478076,- | |||
|id=chr3:95478057..95478076,- | |||
|ontology_enrichment_celltype=CL:0000838!1.02e-09!12;CL:0000084!4.14e-09!11;CL:0000827!4.14e-09!11;CL:0000542!1.17e-08!13;CL:0000051!1.17e-08!13;CL:0002031!2.15e-08!25;CL:0000791!1.06e-07!9;CL:0000789!1.06e-07!9;CL:0002420!1.06e-07!9;CL:0002419!1.06e-07!9;CL:0000790!1.06e-07!9;CL:0000624!6.28e-07!8;CL:0000738!6.28e-07!17;CL:0002087!6.28e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.41e-12,8;CL:0000791,3.33e-11,9;CL:0000789,3.33e-11,9;CL:0002420,3.33e-11,9;CL:0002419,3.33e-11,9;CL:0000790,3.33e-11,9;CL:0000084,3.35e-09,11;CL:0000827,3.35e-09,11;CL:0000838,1.90e-08,12;CL:0000542,8.26e-08,13;CL:0000051,8.26e-08,13;CL:0000815,1.20e-07,1;CL:0000792,1.20e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.67e-15!48;UBERON:0004177!3.64e-14!29;UBERON:0002390!4.55e-13!45;UBERON:0003061!4.55e-13!45;UBERON:0006562!5.57e-12!24;UBERON:0001557!5.57e-12!24;UBERON:0001042!5.57e-12!24;UBERON:0008814!5.57e-12!24;UBERON:0009145!5.57e-12!24;UBERON:0002370!2.74e-11!23;UBERON:0000974!2.74e-11!23;UBERON:0004807!2.74e-11!23;UBERON:0005058!2.74e-11!23;UBERON:0003351!2.74e-11!23;UBERON:0009113!2.74e-11!23;UBERON:0003295!2.74e-11!23;UBERON:0009722!2.74e-11!23;UBERON:0005562!2.74e-11!23;UBERON:0007690!2.74e-11!23;UBERON:0000072!5.98e-11!27;UBERON:0003408!1.56e-10!24;UBERON:0000065!2.24e-10!41;UBERON:0001004!6.58e-10!42;UBERON:0003081!1.21e-09!88;UBERON:0002405!6.76e-09!70;UBERON:0000063!7.19e-08!35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.11e-19,29;UBERON:0005057,4.11e-19,29;UBERON:0002193,2.96e-16,48;UBERON:0002405,2.96e-16,48;UBERON:0002370,1.18e-15,23;UBERON:0000974,1.18e-15,23;UBERON:0004807,1.18e-15,23;UBERON:0005058,1.18e-15,23;UBERON:0003351,1.18e-15,23;UBERON:0009113,1.18e-15,23;UBERON:0003295,1.18e-15,23;UBERON:0009722,1.18e-15,23;UBERON:0005562,1.18e-15,23;UBERON:0007690,1.18e-15,23;UBERON:0000077,1.21e-15,35;UBERON:0006562,5.71e-15,24;UBERON:0003408,5.71e-15,24;UBERON:0001557,5.71e-15,24;UBERON:0001042,5.71e-15,24;UBERON:0008814,5.71e-15,24;UBERON:0009145,5.71e-15,24;UBERON:0002390,1.79e-14,45;UBERON:0003061,1.79e-14,45;UBERON:0000072,3.21e-13,27;UBERON:0007811,1.04e-09,36;UBERON:0000065,2.01e-08,41;UBERON:0001004,3.35e-08,42;UBERON:0000153,5.45e-08,43;UBERON:0000029,1.83e-07,1;UBERON:0001097,1.83e-07,1;UBERON:0003968,1.83e-07,1;UBERON:0001467,1.83e-07,1;UBERON:0003081,8.21e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,5.29405626110463,0.140788722151667,0.936258105287974,0.171217968225505,0.159544317990673,2.22560948910567,2.97229368224591,0.999329285446988,0.202475267389826,0,1.26184866143295,0.822686601634433,0.42438965179803,0.0850432901510698,0.297872853602656,0.783599367416806,0.319984845586813,0.45881856213434,0,0,0,0,0.252030129759931,0.443461021310609,0,0,0,0,0,0,0.418531630736908,0.7813353445238,0,0,0.683045484958446,0,0.125896817975577,0.202753862439029,0,0.782391344348039,0,0,0.194429899074283,0.279972843250725,0,0.335565212115473,1.45072428402269,0.672187598284928,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0.511290967734173,0.259786004602869,0.70667914902068,0,0,0,0,0.216491041011214,0,0,0,2.33044095282455,0,0.173485326766136,0,0,0,0,0,0.247194967734374,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.248813941220186,0.252722758433675,0,0,0,0,0,0.136072998302656,0,0,0,0,0,0.351902248327898,0,0.278047249225598,0,0,0,0,0,0.284163499395593,0,0,0.180062061461015,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0.243206428637567,0.292399974850665,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0.147610147979602,0,0,0,0,0.196558995113203,0,0,0,0.50925170356284,0,0.486405680325106,0,0,0,0,0,0,0,0.739012760666419,0,0,0,0,0.335012514883631,0,0,0.157635144106191,0,0.159454768657487,0.327726629431476,0.518054945597687,0.144649058581512,0,0,0,0,0,0,0,0,0,0.390438744296638,0.215423397732799,0,0.222798674082394,0.283076530788832,0,0,0,0,0,0.178065603667255,0,0,1.32745138339963,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0,0.517434735131018,0,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0,0.16488625294148,0,0,0,0.164140899745061,0,0,0.683483523191411,0,0.185194527369712,0.565105371014073,1.50363650493128,1.14389086603261,0.169978429993855,0,0,0,0,0,0,0,0.218362563746178,0,0.0826534557253359,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,1.58005560314089,0,0.205421914329655,0.129920822977795,0.358053391334963,1.19208812868759,0.961563596159751,1.03382669022204,1.41353029927407,0.609654453239999,0.705783295957884,0.877120926657772,1.25075394132428,2.57129184799452,0.453460767230423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0,0.231867835620421 | |phase1_expression=0,0,0,0,0,0,0,5.29405626110463,0.140788722151667,0.936258105287974,0.171217968225505,0.159544317990673,2.22560948910567,2.97229368224591,0.999329285446988,0.202475267389826,0,1.26184866143295,0.822686601634433,0.42438965179803,0.0850432901510698,0.297872853602656,0.783599367416806,0.319984845586813,0.45881856213434,0,0,0,0,0.252030129759931,0.443461021310609,0,0,0,0,0,0,0.418531630736908,0.7813353445238,0,0,0.683045484958446,0,0.125896817975577,0.202753862439029,0,0.782391344348039,0,0,0.194429899074283,0.279972843250725,0,0.335565212115473,1.45072428402269,0.672187598284928,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0.511290967734173,0.259786004602869,0.70667914902068,0,0,0,0,0.216491041011214,0,0,0,2.33044095282455,0,0.173485326766136,0,0,0,0,0,0.247194967734374,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.248813941220186,0.252722758433675,0,0,0,0,0,0.136072998302656,0,0,0,0,0,0.351902248327898,0,0.278047249225598,0,0,0,0,0,0.284163499395593,0,0,0.180062061461015,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0.243206428637567,0.292399974850665,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0.147610147979602,0,0,0,0,0.196558995113203,0,0,0,0.50925170356284,0,0.486405680325106,0,0,0,0,0,0,0,0.739012760666419,0,0,0,0,0.335012514883631,0,0,0.157635144106191,0,0.159454768657487,0.327726629431476,0.518054945597687,0.144649058581512,0,0,0,0,0,0,0,0,0,0.390438744296638,0.215423397732799,0,0.222798674082394,0.283076530788832,0,0,0,0,0,0.178065603667255,0,0,1.32745138339963,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0,0.517434735131018,0,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0,0.16488625294148,0,0,0,0.164140899745061,0,0,0.683483523191411,0,0.185194527369712,0.565105371014073,1.50363650493128,1.14389086603261,0.169978429993855,0,0,0,0,0,0,0,0.218362563746178,0,0.0826534557253359,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,1.58005560314089,0,0.205421914329655,0.129920822977795,0.358053391334963,1.19208812868759,0.961563596159751,1.03382669022204,1.41353029927407,0.609654453239999,0.705783295957884,0.877120926657772,1.25075394132428,2.57129184799452,0.453460767230423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0,0.231867835620421 | ||
|short_description=p@chr3:95478057..95478076,- | |||
}} | }} |
Latest revision as of 08:41, 4 August 2015
Short description: | p@chr3:95478057..95478076, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:95478057..95478076, - |
Coexpression cluster: | MCL_coexpression_mm9:33 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.41e-12 | 8 |
mature alpha-beta T cell | 3.33e-11 | 9 |
alpha-beta T cell | 3.33e-11 | 9 |
immature T cell | 3.33e-11 | 9 |
mature T cell | 3.33e-11 | 9 |
immature alpha-beta T cell | 3.33e-11 | 9 |
T cell | 3.35e-09 | 11 |
pro-T cell | 3.35e-09 | 11 |
lymphoid lineage restricted progenitor cell | 1.90e-08 | 12 |
lymphocyte | 8.26e-08 | 13 |
common lymphoid progenitor | 8.26e-08 | 13 |
regulatory T cell | 1.20e-07 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.20e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 4.11e-19 | 29 |
immune organ | 4.11e-19 | 29 |
hemolymphoid system | 2.96e-16 | 48 |
immune system | 2.96e-16 | 48 |
thymus | 1.18e-15 | 23 |
neck | 1.18e-15 | 23 |
respiratory system epithelium | 1.18e-15 | 23 |
hemolymphoid system gland | 1.18e-15 | 23 |
pharyngeal epithelium | 1.18e-15 | 23 |
thymic region | 1.18e-15 | 23 |
pharyngeal gland | 1.18e-15 | 23 |
entire pharyngeal arch endoderm | 1.18e-15 | 23 |
thymus primordium | 1.18e-15 | 23 |
early pharyngeal endoderm | 1.18e-15 | 23 |
mixed endoderm/mesoderm-derived structure | 1.21e-15 | 35 |
pharynx | 5.71e-15 | 24 |
gland of gut | 5.71e-15 | 24 |
upper respiratory tract | 5.71e-15 | 24 |
chordate pharynx | 5.71e-15 | 24 |
pharyngeal arch system | 5.71e-15 | 24 |
pharyngeal region of foregut | 5.71e-15 | 24 |
hematopoietic system | 1.79e-14 | 45 |
blood island | 1.79e-14 | 45 |
segment of respiratory tract | 3.21e-13 | 27 |
craniocervical region | 1.04e-09 | 36 |
respiratory tract | 2.01e-08 | 41 |
respiratory system | 3.35e-08 | 42 |
anterior region of body | 5.45e-08 | 43 |
lymph node | 1.83e-07 | 1 |
axillary lymph node | 1.83e-07 | 1 |
peripheral lymph node | 1.83e-07 | 1 |
shoulder | 1.83e-07 | 1 |
lateral plate mesoderm | 8.21e-07 | 87 |