FFCP PHASE1:Mm9::chr11:98233288..98233299,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=76|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:98233288..98233299,+|id=chr11:98233288..98233299,+|ontology_enrichment_celltype=CL:0002609!2.73e-32!6;CL:0002608!1.72e-16!3;CL:0000117!3.92e-08!23;CL:0000337!3.92e-08!23|ontology_enrichment_celltype_v019_2=CL:0002609,3.91e-58,6;CL:0000117,6.04e-16,23;CL:0000337,6.04e-16,23;CL:0000540,2.20e-11,33;CL:0000047,2.20e-11,33;CL:0000031,2.20e-11,33;CL:0000404,2.20e-11,33;CL:0000393,9.26e-10,39;CL:0000211,9.26e-10,39;CL:0002319,6.31e-09,43;CL:0000221,9.66e-09,44;CL:0000133,9.66e-09,44;CL:0002608,1.88e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001954!3.07e-12!7;UBERON:0003022!3.07e-12!7;UBERON:0002421!3.07e-12!7;UBERON:0000349!3.07e-12!7;UBERON:0002600!3.07e-12!7;UBERON:0000956!6.02e-12!21;UBERON:0001869!6.02e-12!21;UBERON:0000203!6.02e-12!21;UBERON:0002791!5.21e-11!29;UBERON:0003528!5.21e-11!29;UBERON:0001893!5.21e-11!29;UBERON:0002780!5.11e-10!39;UBERON:0001890!5.11e-10!39;UBERON:0006240!5.11e-10!39;UBERON:0003080!9.74e-10!40;UBERON:0002020!2.99e-09!34;UBERON:0002616!9.92e-08!49;UBERON:0003056!9.92e-08!49;UBERON:0000955!1.50e-07!50;UBERON:0006238!1.50e-07!50;UBERON:0001049!3.25e-07!52;UBERON:0005068!3.25e-07!52;UBERON:0006241!3.25e-07!52;UBERON:0007135!3.25e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.25e-17,21;UBERON:0001869,2.25e-17,21;UBERON:0000203,2.25e-17,21;UBERON:0003528,7.80e-13,29;UBERON:0002791,7.80e-13,29;UBERON:0001893,7.80e-13,29;UBERON:0002020,4.50e-11,34;UBERON:0002780,9.26e-10,39;UBERON:0001890,9.26e-10,39;UBERON:0006240,9.26e-10,39;UBERON:0003080,1.55e-09,40;UBERON:0002616,2.15e-08,46;UBERON:0000955,3.12e-08,47;UBERON:0006238,3.12e-08,47;UBERON:0003056,6.29e-08,49;UBERON:0001049,1.63e-07,52;UBERON:0005068,1.63e-07,52;UBERON:0006241,1.63e-07,52;UBERON:0007135,1.63e-07,52;UBERON:0000073,2.91e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25127410464758,2.29510095163874,2.94454945891935,0,0,0.244981598429908,0.191690942036473,1.83843757322004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0.20778804455956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0.209613162627982,0,0,0,0,0,0,0,0.187283014939765,0.128050304809739,0,0,0.115884325944855,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0.233931608445408,0,0,0,0|short_description=p@chr11:98233288..98233299,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=76 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:98233288..98233299,+ | |||
|id=chr11:98233288..98233299,+ | |||
|ontology_enrichment_celltype=CL:0002609!2.73e-32!6;CL:0002608!1.72e-16!3;CL:0000117!3.92e-08!23;CL:0000337!3.92e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,3.91e-58,6;CL:0000117,6.04e-16,23;CL:0000337,6.04e-16,23;CL:0000540,2.20e-11,33;CL:0000047,2.20e-11,33;CL:0000031,2.20e-11,33;CL:0000404,2.20e-11,33;CL:0000393,9.26e-10,39;CL:0000211,9.26e-10,39;CL:0002319,6.31e-09,43;CL:0000221,9.66e-09,44;CL:0000133,9.66e-09,44;CL:0002608,1.88e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001954!3.07e-12!7;UBERON:0003022!3.07e-12!7;UBERON:0002421!3.07e-12!7;UBERON:0000349!3.07e-12!7;UBERON:0002600!3.07e-12!7;UBERON:0000956!6.02e-12!21;UBERON:0001869!6.02e-12!21;UBERON:0000203!6.02e-12!21;UBERON:0002791!5.21e-11!29;UBERON:0003528!5.21e-11!29;UBERON:0001893!5.21e-11!29;UBERON:0002780!5.11e-10!39;UBERON:0001890!5.11e-10!39;UBERON:0006240!5.11e-10!39;UBERON:0003080!9.74e-10!40;UBERON:0002020!2.99e-09!34;UBERON:0002616!9.92e-08!49;UBERON:0003056!9.92e-08!49;UBERON:0000955!1.50e-07!50;UBERON:0006238!1.50e-07!50;UBERON:0001049!3.25e-07!52;UBERON:0005068!3.25e-07!52;UBERON:0006241!3.25e-07!52;UBERON:0007135!3.25e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.25e-17,21;UBERON:0001869,2.25e-17,21;UBERON:0000203,2.25e-17,21;UBERON:0003528,7.80e-13,29;UBERON:0002791,7.80e-13,29;UBERON:0001893,7.80e-13,29;UBERON:0002020,4.50e-11,34;UBERON:0002780,9.26e-10,39;UBERON:0001890,9.26e-10,39;UBERON:0006240,9.26e-10,39;UBERON:0003080,1.55e-09,40;UBERON:0002616,2.15e-08,46;UBERON:0000955,3.12e-08,47;UBERON:0006238,3.12e-08,47;UBERON:0003056,6.29e-08,49;UBERON:0001049,1.63e-07,52;UBERON:0005068,1.63e-07,52;UBERON:0006241,1.63e-07,52;UBERON:0007135,1.63e-07,52;UBERON:0000073,2.91e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25127410464758,2.29510095163874,2.94454945891935,0,0,0.244981598429908,0.191690942036473,1.83843757322004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0.20778804455956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0.209613162627982,0,0,0,0,0,0,0,0.187283014939765,0.128050304809739,0,0,0.115884325944855,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr11:98233288..98233299,+ | |||
}} |
Revision as of 21:47, 12 September 2013
Short description: | p@chr11:98233288..98233299, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:98233288..98233299, + |
Coexpression cluster: | MCL_coexpression_mm9:76 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 3.91e-58 | 6 |
CNS neuron (sensu Vertebrata) | 6.04e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.04e-16 | 23 |
neuron | 2.20e-11 | 33 |
neuronal stem cell | 2.20e-11 | 33 |
neuroblast | 2.20e-11 | 33 |
electrically signaling cell | 2.20e-11 | 33 |
electrically responsive cell | 9.26e-10 | 39 |
electrically active cell | 9.26e-10 | 39 |
neural cell | 6.31e-09 | 43 |
ectodermal cell | 9.66e-09 | 44 |
neurectodermal cell | 9.66e-09 | 44 |
hippocampal neuron | 1.88e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.25e-17 | 21 |
cerebral hemisphere | 2.25e-17 | 21 |
pallium | 2.25e-17 | 21 |
brain grey matter | 7.80e-13 | 29 |
regional part of telencephalon | 7.80e-13 | 29 |
telencephalon | 7.80e-13 | 29 |
gray matter | 4.50e-11 | 34 |
regional part of forebrain | 9.26e-10 | 39 |
forebrain | 9.26e-10 | 39 |
future forebrain | 9.26e-10 | 39 |
anterior neural tube | 1.55e-09 | 40 |
regional part of brain | 2.15e-08 | 46 |
brain | 3.12e-08 | 47 |
future brain | 3.12e-08 | 47 |
pre-chordal neural plate | 6.29e-08 | 49 |
neural tube | 1.63e-07 | 52 |
neural rod | 1.63e-07 | 52 |
future spinal cord | 1.63e-07 | 52 |
neural keel | 1.63e-07 | 52 |
regional part of nervous system | 2.91e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.