FFCP PHASE1:Mm9::chr15:102062351..102062372,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16421|HGNC=|MCL_coexpression_id=40|UniProt=P26011,D3Z0L2|association_with_transcript=0bp_to_ENSMUST00000001327,ENSMUST00000127014,NM_013566,uc012aaa.1_5end|description=CAGE_peak_2_at_Itgb7_5end|id=chr15:102062351..102062372,-|ontology_enrichment_celltype=CL:0000988!2.30e-14!32;CL:0002032!2.30e-14!32;CL:0000037!2.30e-14!32;CL:0000566!2.30e-14!32;CL:0000837!2.30e-14!32;CL:0002031!1.79e-11!25;CL:0002320!1.35e-08!46;CL:0000134!1.35e-08!46;CL:0000838!2.64e-08!12;CL:0000542!6.87e-08!13;CL:0000051!6.87e-08!13;CL:0000049!8.88e-08!19;CL:0000084!1.06e-07!11;CL:0000827!1.06e-07!11|ontology_enrichment_celltype_v019_2=CL:0000988,8.78e-20,32;CL:0002032,8.78e-20,32;CL:0000037,8.78e-20,32;CL:0000837,8.78e-20,32;CL:0002031,3.67e-16,25;CL:0002320,4.54e-13,46;CL:0000134,4.54e-13,46;CL:0000838,2.42e-11,12;CL:0000219,5.72e-11,54;CL:0000049,8.70e-11,19;CL:0000084,1.82e-10,11;CL:0000827,1.82e-10,11;CL:0000542,3.99e-10,13;CL:0000051,3.99e-10,13;CL:0000738,2.14e-09,17;CL:0002087,2.14e-09,17;CL:0000763,1.65e-08,16;CL:0000791,1.79e-08,9;CL:0000789,1.79e-08,9;CL:0002420,1.79e-08,9;CL:0002419,1.79e-08,9;CL:0000790,1.79e-08,9;CL:0000624,1.76e-07,8;CL:0000050,3.70e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0050686,5.87e-07,6|ontology_enrichment_uberon=UBERON:0002193!3.85e-14!48;UBERON:0002390!1.03e-12!45;UBERON:0003061!1.03e-12!45;UBERON:0002405!1.33e-10!70;UBERON:0004177!3.27e-10!29;UBERON:0002384!1.35e-08!46;UBERON:0004119!1.56e-08!130;UBERON:0000925!1.56e-08!130;UBERON:0006595!1.56e-08!130;UBERON:0001007!4.41e-08!128;UBERON:0001555!4.41e-08!128;UBERON:0007026!4.41e-08!128;UBERON:0003408!7.14e-08!24;UBERON:0004921!1.64e-07!126;UBERON:0004185!1.64e-07!126;UBERON:0002370!1.65e-07!23;UBERON:0000974!1.65e-07!23;UBERON:0004807!1.65e-07!23;UBERON:0005058!1.65e-07!23;UBERON:0003351!1.65e-07!23;UBERON:0009113!1.65e-07!23;UBERON:0003295!1.65e-07!23;UBERON:0009722!1.65e-07!23;UBERON:0005562!1.65e-07!23;UBERON:0007690!1.65e-07!23;UBERON:0001004!2.06e-07!42;UBERON:0006562!2.29e-07!24;UBERON:0001557!2.29e-07!24;UBERON:0001042!2.29e-07!24;UBERON:0008814!2.29e-07!24;UBERON:0009145!2.29e-07!24;UBERON:0000077!2.86e-07!97;UBERON:0000065!4.40e-07!41;UBERON:0003081!5.41e-07!88|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.89e-20,48;UBERON:0002405,1.89e-20,48;UBERON:0002390,2.33e-18,45;UBERON:0003061,2.33e-18,45;UBERON:0004177,1.31e-15,29;UBERON:0005057,1.31e-15,29;UBERON:0000077,3.11e-15,35;UBERON:0002384,4.54e-13,46;UBERON:0003408,3.88e-12,24;UBERON:0002370,1.33e-11,23;UBERON:0000974,1.33e-11,23;UBERON:0004807,1.33e-11,23;UBERON:0005058,1.33e-11,23;UBERON:0003351,1.33e-11,23;UBERON:0009113,1.33e-11,23;UBERON:0003295,1.33e-11,23;UBERON:0009722,1.33e-11,23;UBERON:0005562,1.33e-11,23;UBERON:0007690,1.33e-11,23;UBERON:0006562,7.87e-11,24;UBERON:0001557,7.87e-11,24;UBERON:0001042,7.87e-11,24;UBERON:0008814,7.87e-11,24;UBERON:0009145,7.87e-11,24;UBERON:0001004,3.80e-09,42;UBERON:0003081,6.74e-09,87;UBERON:0000072,7.00e-09,27;UBERON:0000065,1.10e-08,41;UBERON:0004119,1.80e-07,118;UBERON:0000925,1.80e-07,118;UBERON:0006595,1.80e-07,118;UBERON:0001007,5.94e-07,116;UBERON:0001555,5.94e-07,116;UBERON:0007026,5.94e-07,116;UBERON:0001041,8.54e-07,80|phase1_expression=0,0,0,0,0,0,0.467225281191051,90.515449732545,6.61706994112834,8.89445200023575,1.19852577757853,1.91453181588807,64.885076643927,78.5909417746787,5.99597571268193,4.656931149966,0.699561878128147,16.8772258466657,14.5341299622083,13.580468857537,1.10556277196391,45.4752556500055,35.5231713228952,3.51983330145495,4.12936705920906,0,0,0,2.66032787238923,5.79669298447841,2.43903561720835,14.6057054895715,15.3766196896143,15.8481681015439,0,0.332469290716985,0,8.37063261473815,13.2827008569046,12.5645698553712,4.70585190424811,3.41522742479223,5.34061388334269,0.125896817975577,0,0,0,0,0,0,1.25987779462826,0,11.9125650300993,42.071004236658,43.3561000893779,0,0,0,0,0.528990979272033,0,2.71075625655306,1.77858959222228,0.449949858640699,0.988866362566974,0,0,0,0,0,0,0,0.441737081903227,0.122490799214954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57469057332826,0.302286240427142,1.44932244350839,0,0,0,0,0,1.40444420131752,0.340860645156116,0,0,0,0,0,0,0.216491041011214,0.506719730950197,0,1.7127581957859,25.8937883647172,1.92974780784272,0.173485326766136,0.304465478312141,0.691846491768175,0.301445281105245,0.23517741427141,0.251333182659351,0.741584903203122,3.03658649531814,6.19227386364912,1.29413479957927,1.98757366614354,2.90925151881133,0,2.04946557908083,1.04723353406728,6.38642638021478,13.2994788201571,4.79922184794726,10.5468288470644,0.149790639404823,0,0.125654352112864,0,0,0.62336413367868,0.162241263067758,0.101839363850316,4.47865094196335,0.505445516867349,0.420883711772948,0,0,0.180062129805349,0,0.136072998302656,0.12811372028485,0,0.258703370739016,0,0,0.351902248327898,0.43839146485515,0.834141747676794,0.696504333044333,0.823128545631774,0.398068533636986,11.937624184325,4.88961023517959,4.26245249093389,0,0,0,0.23674473558521,0.590292695242212,0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| ||
|EntrezGene=16421 | |||
|HGNC= | |||
|MCL_coexpression_id=40 | |||
|UniProt=P26011,D3Z0L2 | |||
|association_with_transcript=0bp_to_ENSMUST00000001327,ENSMUST00000127014,NM_013566,uc012aaa.1_5end | |||
|description=CAGE_peak_2_at_Itgb7_5end | |||
|id=chr15:102062351..102062372,- | |||
|ontology_enrichment_celltype=CL:0000988!2.30e-14!32;CL:0002032!2.30e-14!32;CL:0000037!2.30e-14!32;CL:0000566!2.30e-14!32;CL:0000837!2.30e-14!32;CL:0002031!1.79e-11!25;CL:0002320!1.35e-08!46;CL:0000134!1.35e-08!46;CL:0000838!2.64e-08!12;CL:0000542!6.87e-08!13;CL:0000051!6.87e-08!13;CL:0000049!8.88e-08!19;CL:0000084!1.06e-07!11;CL:0000827!1.06e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,8.78e-20,32;CL:0002032,8.78e-20,32;CL:0000037,8.78e-20,32;CL:0000837,8.78e-20,32;CL:0002031,3.67e-16,25;CL:0002320,4.54e-13,46;CL:0000134,4.54e-13,46;CL:0000838,2.42e-11,12;CL:0000219,5.72e-11,54;CL:0000049,8.70e-11,19;CL:0000084,1.82e-10,11;CL:0000827,1.82e-10,11;CL:0000542,3.99e-10,13;CL:0000051,3.99e-10,13;CL:0000738,2.14e-09,17;CL:0002087,2.14e-09,17;CL:0000763,1.65e-08,16;CL:0000791,1.79e-08,9;CL:0000789,1.79e-08,9;CL:0002420,1.79e-08,9;CL:0002419,1.79e-08,9;CL:0000790,1.79e-08,9;CL:0000624,1.76e-07,8;CL:0000050,3.70e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,5.87e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002193!3.85e-14!48;UBERON:0002390!1.03e-12!45;UBERON:0003061!1.03e-12!45;UBERON:0002405!1.33e-10!70;UBERON:0004177!3.27e-10!29;UBERON:0002384!1.35e-08!46;UBERON:0004119!1.56e-08!130;UBERON:0000925!1.56e-08!130;UBERON:0006595!1.56e-08!130;UBERON:0001007!4.41e-08!128;UBERON:0001555!4.41e-08!128;UBERON:0007026!4.41e-08!128;UBERON:0003408!7.14e-08!24;UBERON:0004921!1.64e-07!126;UBERON:0004185!1.64e-07!126;UBERON:0002370!1.65e-07!23;UBERON:0000974!1.65e-07!23;UBERON:0004807!1.65e-07!23;UBERON:0005058!1.65e-07!23;UBERON:0003351!1.65e-07!23;UBERON:0009113!1.65e-07!23;UBERON:0003295!1.65e-07!23;UBERON:0009722!1.65e-07!23;UBERON:0005562!1.65e-07!23;UBERON:0007690!1.65e-07!23;UBERON:0001004!2.06e-07!42;UBERON:0006562!2.29e-07!24;UBERON:0001557!2.29e-07!24;UBERON:0001042!2.29e-07!24;UBERON:0008814!2.29e-07!24;UBERON:0009145!2.29e-07!24;UBERON:0000077!2.86e-07!97;UBERON:0000065!4.40e-07!41;UBERON:0003081!5.41e-07!88 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.89e-20,48;UBERON:0002405,1.89e-20,48;UBERON:0002390,2.33e-18,45;UBERON:0003061,2.33e-18,45;UBERON:0004177,1.31e-15,29;UBERON:0005057,1.31e-15,29;UBERON:0000077,3.11e-15,35;UBERON:0002384,4.54e-13,46;UBERON:0003408,3.88e-12,24;UBERON:0002370,1.33e-11,23;UBERON:0000974,1.33e-11,23;UBERON:0004807,1.33e-11,23;UBERON:0005058,1.33e-11,23;UBERON:0003351,1.33e-11,23;UBERON:0009113,1.33e-11,23;UBERON:0003295,1.33e-11,23;UBERON:0009722,1.33e-11,23;UBERON:0005562,1.33e-11,23;UBERON:0007690,1.33e-11,23;UBERON:0006562,7.87e-11,24;UBERON:0001557,7.87e-11,24;UBERON:0001042,7.87e-11,24;UBERON:0008814,7.87e-11,24;UBERON:0009145,7.87e-11,24;UBERON:0001004,3.80e-09,42;UBERON:0003081,6.74e-09,87;UBERON:0000072,7.00e-09,27;UBERON:0000065,1.10e-08,41;UBERON:0004119,1.80e-07,118;UBERON:0000925,1.80e-07,118;UBERON:0006595,1.80e-07,118;UBERON:0001007,5.94e-07,116;UBERON:0001555,5.94e-07,116;UBERON:0007026,5.94e-07,116;UBERON:0001041,8.54e-07,80 | |||
|phase1_expression=0,0,0,0,0,0,0.467225281191051,90.515449732545,6.61706994112834,8.89445200023575,1.19852577757853,1.91453181588807,64.885076643927,78.5909417746787,5.99597571268193,4.656931149966,0.699561878128147,16.8772258466657,14.5341299622083,13.580468857537,1.10556277196391,45.4752556500055,35.5231713228952,3.51983330145495,4.12936705920906,0,0,0,2.66032787238923,5.79669298447841,2.43903561720835,14.6057054895715,15.3766196896143,15.8481681015439,0,0.332469290716985,0,8.37063261473815,13.2827008569046,12.5645698553712,4.70585190424811,3.41522742479223,5.34061388334269,0.125896817975577,0,0,0,0,0,0,1.25987779462826,0,11.9125650300993,42.071004236658,43.3561000893779,0,0,0,0,0.528990979272033,0,2.71075625655306,1.77858959222228,0.449949858640699,0.988866362566974,0,0,0,0,0,0,0,0.441737081903227,0.122490799214954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57469057332826,0.302286240427142,1.44932244350839,0,0,0,0,0,1.40444420131752,0.340860645156116,0,0,0,0,0,0,0.216491041011214,0.506719730950197,0,1.7127581957859,25.8937883647172,1.92974780784272,0.173485326766136,0.304465478312141,0.691846491768175,0.301445281105245,0.23517741427141,0.251333182659351,0.741584903203122,3.03658649531814,6.19227386364912,1.29413479957927,1.98757366614354,2.90925151881133,0,2.04946557908083,1.04723353406728,6.38642638021478,13.2994788201571,4.79922184794726,10.5468288470644,0.149790639404823,0,0.125654352112864,0,0,0.62336413367868,0.162241263067758,0.101839363850316,4.47865094196335,0.505445516867349,0.420883711772948,0,0,0.180062129805349,0,0.136072998302656,0.12811372028485,0,0.258703370739016,0,0,0.351902248327898,0.43839146485515,0.834141747676794,0.696504333044333,0.823128545631774,0.398068533636986,11.937624184325,4.88961023517959,4.26245249093389,0,0,0,0.23674473558521,0.590292695242212,0,0,0,0.116765342367169,0,0,0.486412857275134,0.292399974850665,0.219550115291051,0.402619256281115,0,0,8.92130714056255,1.58670339998127,0.426576501070468,0.232236671860439,1.03093969057675,1.00841762311671,0.667134131534611,0.760902504450237,1.42358718463353,0.823494773620054,1.50801125280162,0.397912944082302,0.779856348476481,2.69645822596266,0.648414149624083,0.597423819763102,0,0.228497025219458,0,0,0,0.0701358198903186,0.252946148497029,0,0.470996183524124,0,0,0,1.17935397067922,0.899448449539415,1.42002084971952,0.72353147925725,1.2731292589071,1.15078454980324,0.648540907100142,0,1.43768206527355,1.48856379067401,0.936113019343682,0.757736633841335,0.179397413521912,0.482443521363367,9.05290631816363,0.189491411770485,0.325929952884052,0.339490171550376,0,0.167506257441816,0.476087281772027,0.780534591431195,1.10344600874334,2.21464689648775,1.75400245523236,4.42430949732493,6.04397436530635,3.47157740595628,4.52373851817817,4.89515115436839,0.491764273019036,1.65562047782839,0.321101179975584,0,0.819674726883377,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0.709700426041343,0.178065603667255,0.162886959353576,1.64970122972535,1.32745138339963,0,0.302323556964751,0.377210159511796,0.295301892880773,0,0.775284879504663,0.727067458955011,0.356497378384721,2.21225730555071,0,0,0,0.18006109403131,0,0,0,0.356737635204141,0.164549020602121,0.304464949114599,3.05073220482823,1.0591603543191,0.441056796109924,1.48397627647332,0.645857706783622,0.542816324353403,0.954978752025092,0.492422699235184,1.1659233465194,0.18542530201051,9.22702756308404,4.33412422722767,4.25947412950337,6.59289599516419,3.8274383761887,6.86334519619568,6.11922347977879,9.6566502103324,6.90999869022119,0.954670618015114,0.158167996790568,0.813277868507395,0.324016022465404,0.418176592028937,0.436725127492355,0.269728692769641,0.826534557253359,0.523511883968059,1.03691978633434,3.72803587852155,0,0,0.165458490457098,0,0.516639293910924,0.168956125490778,0,0.13020438484395,0,0,0,7.90027801570446,6.68993210457542,4.93012594391171,2.7283372825337,3.22248052201467,3.3775830312815,6.49055427407832,6.35064966850682,5.25025539730368,2.74344503957999,4.53717833115782,7.30934105548143,6.15755786498109,7.94762934834669,0.453460767230423,0,0,0,0.965947970160952,2.81523713176773,2.19781949120718,1.07184189539533,1.00314420807073,0.564751842617067,0,0,0,0,0,0,0,0,0,0,0,0.853668028770671,0,0.209613162627982,0.183843508450014,0,0,0.64183841918363,0.252697211763798,0.25347929989024,0.188626341386076,0.37456602987953,0.448176066834085,0.516919220600519,0,0.463537303779422,0,0,0.588795680537589,0.342869252385415,0.177475806159338,0.238436189947321,0.290692833264657,0.188218760830661,0.338458431566706,0.365855945745545,0.526139422875686,0.271608227691724,2.24456908663095,0.355905054372522,0.29551344712669,0.409231043169689,0.309873682371932,0.578719832943424,0.749431733813838,0.233931608445408,0.644613162144895,0.57386499620653,0.882365676478062,1.15933917810211 | |||
|short_description=p2@Itgb7 | |||
}} |
Revision as of 10:04, 13 September 2013
Short description: | p2@Itgb7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Itgb7_5end |
Coexpression cluster: | MCL_coexpression_mm9:40 |
Association with transcript: | 0bp_to_ENSMUST00000001327, ENSMUST00000127014, NM_013566, uc012aaa.1_5end |
EntrezGene: | Itgb7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 8.78e-20 | 32 |
hematopoietic oligopotent progenitor cell | 8.78e-20 | 32 |
hematopoietic stem cell | 8.78e-20 | 32 |
hematopoietic multipotent progenitor cell | 8.78e-20 | 32 |
hematopoietic lineage restricted progenitor cell | 3.67e-16 | 25 |
connective tissue cell | 4.54e-13 | 46 |
mesenchymal cell | 4.54e-13 | 46 |
lymphoid lineage restricted progenitor cell | 2.42e-11 | 12 |
motile cell | 5.72e-11 | 54 |
common myeloid progenitor | 8.70e-11 | 19 |
T cell | 1.82e-10 | 11 |
pro-T cell | 1.82e-10 | 11 |
lymphocyte | 3.99e-10 | 13 |
common lymphoid progenitor | 3.99e-10 | 13 |
leukocyte | 2.14e-09 | 17 |
nongranular leukocyte | 2.14e-09 | 17 |
myeloid cell | 1.65e-08 | 16 |
mature alpha-beta T cell | 1.79e-08 | 9 |
alpha-beta T cell | 1.79e-08 | 9 |
immature T cell | 1.79e-08 | 9 |
mature T cell | 1.79e-08 | 9 |
immature alpha-beta T cell | 1.79e-08 | 9 |
CD4-positive, alpha-beta T cell | 1.76e-07 | 8 |
megakaryocyte-erythroid progenitor cell | 3.70e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 5.87e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.