FFCP PHASE1:Hg19::chr1:182992545..182992630,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3915 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |||
|TSSclassifier=S | |||
|UniProt=P11047,Q6NVY8 | |||
|association_with_transcript=0bp_to_ENST00000258341,NM_002293,uc001gpx.2,uc001gpy.3_5end | |||
|coexpression_cluster_id=C1253 | |||
|description=CAGE_peak_1_at_LAMC1_5end | |||
|id=chr1:182992545..182992630,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.25e-30!180;CL:0000222!2.89e-24!119;CL:0002321!6.07e-21!248;CL:0000220!8.49e-21!246;CL:0000680!1.01e-17!57;CL:0000056!1.01e-17!57;CL:0000355!1.01e-17!57;CL:0000057!5.50e-17!75;CL:0000187!5.83e-17!54;CL:0000183!1.24e-16!59;CL:0000393!2.85e-15!60;CL:0000211!2.85e-15!60;CL:0000192!9.02e-13!42;CL:0000514!9.02e-13!42;CL:0000359!2.09e-11!32;CL:0000548!3.29e-10!679;CL:0000004!3.29e-10!679;CL:0000255!3.29e-10!679;CL:0000144!5.25e-10!625;CL:0000012!1.59e-09!682;CL:0002494!2.86e-09!16;CL:0000213!2.16e-07!57;CL:0000215!2.16e-07!57;CL:0002371!2.71e-07!591;CL:0000136!3.04e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.44e-11;32!CL:0000192;6.70e-10;43!CL:0000187;8.25e-10;55!CL:0002494;2.75e-09;16!CL:0000393;7.16e-09;61!CL:0000211;7.16e-09;61!CL:0000134;2.72e-08;55!CL:0000723;9.33e-08;61!CL:0000048;1.72e-07;58!CL:0000057;6.21e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.65e-25,121;CL:0002321,1.17e-21,250;CL:0000680,2.42e-18,58;CL:0000056,2.42e-18,58;CL:0000355,2.42e-18,58;CL:0000187,1.40e-17,55;CL:0000057,2.06e-17,76;CL:0000393,7.41e-16,61;CL:0000211,7.41e-16,61;CL:0000192,2.30e-13,43;CL:0000514,2.30e-13,43;CL:0000359,2.02e-11,32;CL:0002494,2.78e-09,16;CL:0000213,1.49e-07,58;CL:0000215,1.49e-07,58;CL:0000136,2.98e-07,15;CL:0002078,7.59e-07,45 | |||
|ontology_enrichment_development_v019=CL:0000355;4.93e-10;58!CL:0000514;6.70e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!8.42e-22!84;UBERON:0002049!5.04e-20!79;UBERON:0007798!5.04e-20!79;UBERON:0003914!1.31e-19!118;UBERON:0002100!1.61e-19!216;UBERON:0004290!3.14e-18!70;UBERON:0000914!3.43e-18!83;UBERON:0002329!3.43e-18!83;UBERON:0003077!3.43e-18!83;UBERON:0003059!3.43e-18!83;UBERON:0007282!3.43e-18!83;UBERON:0009618!3.43e-18!83;UBERON:0007285!3.43e-18!83;UBERON:0005256!6.40e-18!143;UBERON:0001134!1.08e-17!61;UBERON:0002036!1.08e-17!61;UBERON:0003082!1.08e-17!61;UBERON:0000490!1.30e-17!138;UBERON:0000486!2.27e-17!82;UBERON:0002385!3.88e-17!63;UBERON:0001015!3.88e-17!63;UBERON:0000383!3.88e-17!63;UBERON:0000055!6.26e-17!69;UBERON:0001009!1.44e-16!113;UBERON:0004535!4.84e-16!110;UBERON:0001981!5.22e-16!60;UBERON:0007500!5.22e-16!60;UBERON:0004537!5.22e-16!60;UBERON:0006965!5.22e-16!60;UBERON:0003104!3.72e-15!238;UBERON:0009142!3.72e-15!238;UBERON:0001637!3.56e-14!42;UBERON:0003509!3.56e-14!42;UBERON:0004572!3.56e-14!42;UBERON:0000475!1.45e-12!365;UBERON:0004573!1.48e-12!33;UBERON:0004571!1.48e-12!33;UBERON:0000468!2.49e-11!659;UBERON:0000481!1.52e-10!347;UBERON:0000119!1.64e-10!312;UBERON:0000483!5.07e-10!309;UBERON:0000926!1.00e-09!448;UBERON:0004120!1.00e-09!448;UBERON:0006603!1.00e-09!448;UBERON:0007100!1.15e-09!27;UBERON:0000948!2.71e-09!24;UBERON:0005498!2.71e-09!24;UBERON:0004140!2.71e-09!24;UBERON:0009881!2.71e-09!24;UBERON:0004141!2.71e-09!24;UBERON:0003084!2.71e-09!24;UBERON:0007005!2.71e-09!24;UBERON:0004139!2.71e-09!24;UBERON:0004291!2.71e-09!24;UBERON:0000467!3.84e-08!625;UBERON:0000480!6.46e-08!626;UBERON:0000477!8.90e-08!286;UBERON:0003102!1.33e-07!95;UBERON:0000947!2.16e-07!21;UBERON:0010191!2.16e-07!21;UBERON:0003103!2.62e-07!69;UBERON:0004923!3.48e-07!57;UBERON:0001013!5.12e-07!14;UBERON:0004458!9.60e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.19e-11;33!UBERON:0004571;1.19e-11;33!UBERON:0001637;9.15e-11;42!UBERON:0003509;9.15e-11;42!UBERON:0004572;9.15e-11;42!UBERON:0007100;2.87e-09;25!UBERON:0000948;6.68e-09;22!UBERON:0007500;9.32e-09;56!UBERON:0001981;9.32e-09;56!UBERON:0004537;9.32e-09;56!UBERON:0002049;1.68e-08;75!UBERON:0007798;1.68e-08;75!UBERON:0000055;1.73e-08;65!UBERON:0002385;1.06e-07;31!UBERON:0001015;1.06e-07;31!UBERON:0000383;1.06e-07;31!UBERON:0000947;2.09e-07;21!UBERON:0010191;2.09e-07;21!UBERON:0001013;4.99e-07;14!UBERON:0002384;9.11e-07;198 | |||
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| |||
|short_description=p1@LAMC1 | |||
}} |
Revision as of 02:09, 12 September 2013
Short description: | p1@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | 0bp_to_ENST00000258341, NM_002293, uc001gpx.2, uc001gpy.3_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047Q6NVY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.65e-25 | 121 |
embryonic cell | 1.17e-21 | 250 |
muscle precursor cell | 2.42e-18 | 58 |
myoblast | 2.42e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-18 | 58 |
muscle cell | 1.40e-17 | 55 |
fibroblast | 2.06e-17 | 76 |
electrically responsive cell | 7.41e-16 | 61 |
electrically active cell | 7.41e-16 | 61 |
smooth muscle cell | 2.30e-13 | 43 |
smooth muscle myoblast | 2.30e-13 | 43 |
vascular associated smooth muscle cell | 2.02e-11 | 32 |
cardiocyte | 2.78e-09 | 16 |
lining cell | 1.49e-07 | 58 |
barrier cell | 1.49e-07 | 58 |
fat cell | 2.98e-07 | 15 |
meso-epithelial cell | 7.59e-07 | 45 |
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