FFCP PHASE1:Hg19::chr12:25205852..25205862,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4033|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6690|TSSclassifier=W|UniProt=G3V3C2|association_with_transcript=-16bp_to_ENST00000554272_5end|coexpression_cluster_id=C96|description=CAGE_peak_6_at_LRMP_5end|id=chr12:25205852..25205862,+|ontology_enrichment_celltype=CL:0000037!2.21e-47!172;CL:0000566!2.21e-47!172;CL:0002032!3.07e-45!165;CL:0000837!3.07e-45!165;CL:0000988!9.26e-43!182;CL:0000738!1.38e-40!140;CL:0002031!5.15e-39!124;CL:0002087!2.18e-35!119;CL:0000763!6.42e-30!112;CL:0000049!6.42e-30!112;CL:0000557!1.63e-26!71;CL:0000766!9.04e-25!76;CL:0000839!4.61e-24!70;CL:0002009!5.60e-23!65;CL:0002194!3.56e-21!63;CL:0000576!3.56e-21!63;CL:0000040!3.56e-21!63;CL:0000559!3.56e-21!63;CL:0000945!1.64e-16!24;CL:0000826!1.64e-16!24;CL:0002057!3.60e-15!42;CL:0000860!1.68e-13!45;CL:0000542!2.08e-13!53;CL:0000051!2.08e-13!53;CL:0000838!9.56e-13!52;CL:0000236!3.22e-07!14;CL:0000134!3.90e-07!358|ontology_enrichment_celltype_v019=CL:0000945;1.94e-26;24!CL:0000236;1.50e-12;13!CL:0000097;3.31e-09;5!CL:0000542;7.62e-09;53!CL:0000763;2.90e-07;100!CL:0001014;6.22e-07;2!CL:0001016;6.22e-07;2|ontology_enrichment_celltype_v019_2=CL:0002032,4.38e-30,161;CL:0000837,4.38e-30,161;CL:0000037,2.57e-28,168;CL:0000945,2.45e-26,24;CL:0000826,2.45e-26,24;CL:0000988,2.99e-26,177;CL:0002031,9.40e-24,120;CL:0000738,9.68e-23,136;CL:0000763,6.05e-17,108;CL:0000049,6.05e-17,108;CL:0002087,2.07e-16,115;CL:0000236,2.18e-14,14;CL:0000838,5.67e-13,52;CL:0000542,1.21e-12,53;CL:0000051,1.21e-12,53;CL:0000557,1.66e-11,67;CL:0000766,1.87e-10,72;CL:0000097,3.70e-09,5;CL:0002028,3.70e-09,5;CL:0000839,3.96e-09,66;CL:0000817,4.59e-09,3;CL:0002009,7.16e-08,61;CL:0002393,9.11e-08,9;CL:0002397,9.11e-08,9;CL:0000134,3.04e-07,354;CL:0001014,6.56e-07,2;CL:0001016,6.56e-07,2;CL:0002320,6.82e-07,361;CL:0000785,7.15e-07,2;CL:0000955,7.15e-07,2;CL:0000818,7.15e-07,2;CL:0000954,7.15e-07,2;CL:0000816,7.15e-07,2|ontology_enrichment_development_v019=CL:0000051;7.62e-09;53!CL:0000954;9.06e-07;2|ontology_enrichment_disease=DOID:2531!1.58e-16!51;DOID:0060083!1.58e-16!51;DOID:1240!6.47e-11!39;DOID:8692!2.22e-09!31;DOID:0060058!2.61e-07!10|ontology_enrichment_disease_v019=DOID:2531;1.42e-10;51!DOID:0060083;1.42e-10;51!DOID:8692;1.57e-10;31!DOID:0060058;2.31e-10;10!DOID:1240;2.17e-09;39|ontology_enrichment_disease_v019_2=DOID:2531,1.34e-19,51;DOID:0060083,1.34e-19,51;DOID:1240,4.86e-11,39;DOID:8692,8.79e-11,31;DOID:0060058,1.86e-10,10|ontology_enrichment_uberon=UBERON:0002193!1.04e-31!112;UBERON:0002390!2.22e-30!102;UBERON:0003061!2.22e-30!102;UBERON:0002371!6.33e-24!80;UBERON:0007023!8.16e-23!115;UBERON:0001474!5.20e-21!86;UBERON:0002405!2.53e-20!115;UBERON:0004765!6.37e-17!101;UBERON:0001434!6.37e-17!101;UBERON:0001049!1.75e-07!57;UBERON:0005068!1.75e-07!57;UBERON:0006241!1.75e-07!57;UBERON:0007135!1.75e-07!57;UBERON:0003080!5.73e-07!42;UBERON:0002619!6.44e-07!22;UBERON:0002020!7.62e-07!34;UBERON:0003528!7.62e-07!34;UBERON:0001893!8.57e-07!34|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.40e-18,108;UBERON:0002390,2.96e-16,98;UBERON:0003061,2.96e-16,98;UBERON:0002405,9.95e-15,93;UBERON:0002371,8.83e-11,76;UBERON:0001474,1.25e-09,82;UBERON:0004765,2.41e-08,90;UBERON:0001434,4.84e-07,100;UBERON:0002384,6.16e-07,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,1.64201178899891,1.33808328233255,0,0,0.309632246632152,0,0,0,4.880433636559,3.69640004467296,0.293600439334847,0.553995408531877,0,0,0.671746422719773,1.94336199611388,1.80302897343931,0.726991193897824,0.377875943688809,1.94067248950253,0.232429036905685,0,0.619412741790207,0,0.256160706529101,0.236482229888585,0.344745680736619,0.645484683583826,0,0.376484679085209,0,0.674170453335254,0.306083892370903,0.962787081228281,0.639337125799041,0.659702600373432,0.199463657621632,0,0.290209238628584,0.56738522469114,0,0,0,0.868755378820466,0,1.10483290796269,0.632924774881769,1.69004229049553,2.55125159958052,1.67726916406701,0.44931452458598,0.750884464207532,0.48217676009124,0.570025487482497,2.38700012638908,1.27864907635244,0,1.09227722252426,1.77901850772711,1.28019066769952,0,0.574752439954483,1.32208974556972,0,1.70763890732835,0,2.6759125968766,1.32171328579026,1.68152568894461,0,0.196709770113833,0,0.205601498999509,0,0,1.4203434172042,0,0,0,0,0,0,0.130059347559878,0.164437904603676,1.10540007114339,0,0,0.535081656179426,0,0,0,0.34362744548263,0.506039384039006,0,0,0,0.150575119077773,0.639933055772092,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.870648686496336,0.398873881556595,0,0,0.371457501329565,0,0,0,0,0,0,0,0.516833518338658,1.77883131343355,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0.468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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4033 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6690 | |||
|TSSclassifier=W | |||
|UniProt=G3V3C2 | |||
|association_with_transcript=-16bp_to_ENST00000554272_5end | |||
|coexpression_cluster_id=C96 | |||
|description=CAGE_peak_6_at_LRMP_5end | |||
|id=chr12:25205852..25205862,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.21e-47!172;CL:0000566!2.21e-47!172;CL:0002032!3.07e-45!165;CL:0000837!3.07e-45!165;CL:0000988!9.26e-43!182;CL:0000738!1.38e-40!140;CL:0002031!5.15e-39!124;CL:0002087!2.18e-35!119;CL:0000763!6.42e-30!112;CL:0000049!6.42e-30!112;CL:0000557!1.63e-26!71;CL:0000766!9.04e-25!76;CL:0000839!4.61e-24!70;CL:0002009!5.60e-23!65;CL:0002194!3.56e-21!63;CL:0000576!3.56e-21!63;CL:0000040!3.56e-21!63;CL:0000559!3.56e-21!63;CL:0000945!1.64e-16!24;CL:0000826!1.64e-16!24;CL:0002057!3.60e-15!42;CL:0000860!1.68e-13!45;CL:0000542!2.08e-13!53;CL:0000051!2.08e-13!53;CL:0000838!9.56e-13!52;CL:0000236!3.22e-07!14;CL:0000134!3.90e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.94e-26;24!CL:0000236;1.50e-12;13!CL:0000097;3.31e-09;5!CL:0000542;7.62e-09;53!CL:0000763;2.90e-07;100!CL:0001014;6.22e-07;2!CL:0001016;6.22e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,4.38e-30,161;CL:0000837,4.38e-30,161;CL:0000037,2.57e-28,168;CL:0000945,2.45e-26,24;CL:0000826,2.45e-26,24;CL:0000988,2.99e-26,177;CL:0002031,9.40e-24,120;CL:0000738,9.68e-23,136;CL:0000763,6.05e-17,108;CL:0000049,6.05e-17,108;CL:0002087,2.07e-16,115;CL:0000236,2.18e-14,14;CL:0000838,5.67e-13,52;CL:0000542,1.21e-12,53;CL:0000051,1.21e-12,53;CL:0000557,1.66e-11,67;CL:0000766,1.87e-10,72;CL:0000097,3.70e-09,5;CL:0002028,3.70e-09,5;CL:0000839,3.96e-09,66;CL:0000817,4.59e-09,3;CL:0002009,7.16e-08,61;CL:0002393,9.11e-08,9;CL:0002397,9.11e-08,9;CL:0000134,3.04e-07,354;CL:0001014,6.56e-07,2;CL:0001016,6.56e-07,2;CL:0002320,6.82e-07,361;CL:0000785,7.15e-07,2;CL:0000955,7.15e-07,2;CL:0000818,7.15e-07,2;CL:0000954,7.15e-07,2;CL:0000816,7.15e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;7.62e-09;53!CL:0000954;9.06e-07;2 | |||
|ontology_enrichment_disease=DOID:2531!1.58e-16!51;DOID:0060083!1.58e-16!51;DOID:1240!6.47e-11!39;DOID:8692!2.22e-09!31;DOID:0060058!2.61e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:2531;1.42e-10;51!DOID:0060083;1.42e-10;51!DOID:8692;1.57e-10;31!DOID:0060058;2.31e-10;10!DOID:1240;2.17e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.34e-19,51;DOID:0060083,1.34e-19,51;DOID:1240,4.86e-11,39;DOID:8692,8.79e-11,31;DOID:0060058,1.86e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0002193!1.04e-31!112;UBERON:0002390!2.22e-30!102;UBERON:0003061!2.22e-30!102;UBERON:0002371!6.33e-24!80;UBERON:0007023!8.16e-23!115;UBERON:0001474!5.20e-21!86;UBERON:0002405!2.53e-20!115;UBERON:0004765!6.37e-17!101;UBERON:0001434!6.37e-17!101;UBERON:0001049!1.75e-07!57;UBERON:0005068!1.75e-07!57;UBERON:0006241!1.75e-07!57;UBERON:0007135!1.75e-07!57;UBERON:0003080!5.73e-07!42;UBERON:0002619!6.44e-07!22;UBERON:0002020!7.62e-07!34;UBERON:0003528!7.62e-07!34;UBERON:0001893!8.57e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.40e-18,108;UBERON:0002390,2.96e-16,98;UBERON:0003061,2.96e-16,98;UBERON:0002405,9.95e-15,93;UBERON:0002371,8.83e-11,76;UBERON:0001474,1.25e-09,82;UBERON:0004765,2.41e-08,90;UBERON:0001434,4.84e-07,100;UBERON:0002384,6.16e-07,371 | |||
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| |||
|short_description=p6@LRMP | |||
}} |
Revision as of 22:15, 10 September 2013
Short description: | p6@LRMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LRMP_5end |
Coexpression cluster: | C96_non_acute_tonsil_spleen_Burkitt_lymphoma_appendix |
Association with transcript: | -16bp_to_ENST00000554272_5end |
EntrezGene: | LRMP |
HGNC: | 6690 |
UniProt: | G3V3C2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.40e-18 | 108 |
hematopoietic system | 2.96e-16 | 98 |
blood island | 2.96e-16 | 98 |
immune system | 9.95e-15 | 93 |
bone marrow | 8.83e-11 | 76 |
bone element | 1.25e-09 | 82 |
skeletal element | 2.41e-08 | 90 |
skeletal system | 4.84e-07 | 100 |
connective tissue | 6.16e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.34e-19 | 51 |
immune system cancer | 1.34e-19 | 51 |
leukemia | 4.86e-11 | 39 |
myeloid leukemia | 8.79e-11 | 31 |
lymphoma | 1.86e-10 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.