FFCP PHASE1:Hg19::chr12:58003893..58003906,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=115557|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30275|TSSclassifier=S|UniProt=Q96M35,F8W7Z4,A9CQZ6,Q86VW2|association_with_transcript=-56bp_to_ENST00000300189,ENST00000333972,NM_001111270,uc009zpy.2_5end|coexpression_cluster_id=C2225|description=CAGE_peak_6_at_ARHGEF25_5end|id=chr12:58003893..58003906,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006603;1.34e-09;65!UBERON:0000358;1.27e-08;1!UBERON:0004874;1.27e-08;1!UBERON:0009143;2.55e-08;1!UBERON:0008801;2.55e-08;1!UBERON:0006242;2.55e-08;1!UBERON:0004140;2.55e-08;1!UBERON:0005062;3.94e-08;4!UBERON:0007284;3.94e-08;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.85e-45!115;UBERON:0001049!7.59e-12!57;UBERON:0005068!7.59e-12!57;UBERON:0006241!7.59e-12!57;UBERON:0007135!7.59e-12!57;UBERON:0001017!6.29e-11!82;UBERON:0005743!7.00e-11!86;UBERON:0003075!9.62e-11!86;UBERON:0007284!9.62e-11!86;UBERON:0002346!1.28e-10!90;UBERON:0000475!8.20e-10!365;UBERON:0002616!3.46e-09!59;UBERON:0000481!3.69e-09!347;UBERON:0000468!3.78e-09!659;UBERON:0000073!5.15e-09!94;UBERON:0001016!5.15e-09!94;UBERON:0000955!5.81e-09!69;UBERON:0006238!5.81e-09!69;UBERON:0000153!6.38e-09!129;UBERON:0007811!6.38e-09!129;UBERON:0000062!7.38e-09!511;UBERON:0000033!5.52e-08!123;UBERON:0000924!5.62e-08!173;UBERON:0006601!5.62e-08!173;UBERON:0004121!6.14e-08!169;UBERON:0000922!8.70e-08!612;UBERON:0003080!1.42e-07!42;UBERON:0001893!5.54e-07!34;UBERON:0002780!8.08e-07!41;UBERON:0001890!8.08e-07!41;UBERON:0006240!8.08e-07!41;UBERON:0000477!8.65e-07!286|ontology_enrichment_uberon_v019=UBERON:0003978;1.47e-10;3!UBERON:0000946;1.47e-10;3!UBERON:0006834;6.75e-09;1!UBERON:0001000;9.11e-09;1!UBERON:0002146;9.11e-09;1!UBERON:0005623;9.11e-09;1!UBERON:0005352;9.11e-09;1!UBERON:0000989;1.27e-08;1!UBERON:0008811;1.27e-08;1!UBERON:0001831;2.55e-08;1!UBERON:0002135;2.55e-08;1!UBERON:0001567;2.55e-08;1!UBERON:0001155;1.02e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.52e-19,114;UBERON:0003978,1.55e-10,3;UBERON:0009751,1.55e-10,3;UBERON:0000946,1.55e-10,3;UBERON:0002523,1.55e-10,3;UBERON:0005983,1.55e-10,3;UBERON:0002165,1.55e-10,3;UBERON:0002062,1.55e-10,3;UBERON:0007280,1.55e-10,3;UBERON:0006834,6.50e-09,1;UBERON:0001000,8.15e-09,1;UBERON:0005352,8.15e-09,1;UBERON:0002146,8.78e-09,1;UBERON:0005623,8.78e-09,1;UBERON:0000989,1.10e-08,1;UBERON:0008811,1.10e-08,1;UBERON:0006258,1.10e-08,1;UBERON:0005876,1.10e-08,1;UBERON:0004874,1.10e-08,1;UBERON:0002135,2.84e-08,1;UBERON:0001831,3.06e-08,1;UBERON:0001567,3.06e-08,1;UBERON:0008801,3.06e-08,1;UBERON:0001155,9.15e-08,9|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.12786256184353,0,0,0,0,0.486634870302636,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0.438977620880838,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0.504867548488229,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.310983165046111,0,0,0,1.28648187638577,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.391602314925481,0.686286847621712,0,0,0,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0,0,0,0,0,0,0,0,0.6970372701606,0.308033580176089,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,1.9676842561399,0,0,0,0.286822704408103,0,0,0,0,0,0,0.349934720244983,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0,0,0.140669416410513,0,0,0,2.59022384726391,0.276283915531148,0,0,0,0,0,0,0,3.64980600856654,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.60298219312704,0,0.221158519862449,0,0.438770794307945,0,0,4.00141344219745,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,2.29989667708682,2.4441205797345,0,0,0,0.067401132980677,0.802577647298789,0.468528891450678,0,0,0,3.94584402849391,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,1.0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=115557 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30275 | |||
|TSSclassifier=S | |||
|UniProt=Q96M35,F8W7Z4,A9CQZ6,Q86VW2 | |||
|association_with_transcript=-56bp_to_ENST00000300189,ENST00000333972,NM_001111270,uc009zpy.2_5end | |||
|coexpression_cluster_id=C2225 | |||
|description=CAGE_peak_6_at_ARHGEF25_5end | |||
|id=chr12:58003893..58003906,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006603;1.34e-09;65!UBERON:0000358;1.27e-08;1!UBERON:0004874;1.27e-08;1!UBERON:0009143;2.55e-08;1!UBERON:0008801;2.55e-08;1!UBERON:0006242;2.55e-08;1!UBERON:0004140;2.55e-08;1!UBERON:0005062;3.94e-08;4!UBERON:0007284;3.94e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.85e-45!115;UBERON:0001049!7.59e-12!57;UBERON:0005068!7.59e-12!57;UBERON:0006241!7.59e-12!57;UBERON:0007135!7.59e-12!57;UBERON:0001017!6.29e-11!82;UBERON:0005743!7.00e-11!86;UBERON:0003075!9.62e-11!86;UBERON:0007284!9.62e-11!86;UBERON:0002346!1.28e-10!90;UBERON:0000475!8.20e-10!365;UBERON:0002616!3.46e-09!59;UBERON:0000481!3.69e-09!347;UBERON:0000468!3.78e-09!659;UBERON:0000073!5.15e-09!94;UBERON:0001016!5.15e-09!94;UBERON:0000955!5.81e-09!69;UBERON:0006238!5.81e-09!69;UBERON:0000153!6.38e-09!129;UBERON:0007811!6.38e-09!129;UBERON:0000062!7.38e-09!511;UBERON:0000033!5.52e-08!123;UBERON:0000924!5.62e-08!173;UBERON:0006601!5.62e-08!173;UBERON:0004121!6.14e-08!169;UBERON:0000922!8.70e-08!612;UBERON:0003080!1.42e-07!42;UBERON:0001893!5.54e-07!34;UBERON:0002780!8.08e-07!41;UBERON:0001890!8.08e-07!41;UBERON:0006240!8.08e-07!41;UBERON:0000477!8.65e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;1.47e-10;3!UBERON:0000946;1.47e-10;3!UBERON:0006834;6.75e-09;1!UBERON:0001000;9.11e-09;1!UBERON:0002146;9.11e-09;1!UBERON:0005623;9.11e-09;1!UBERON:0005352;9.11e-09;1!UBERON:0000989;1.27e-08;1!UBERON:0008811;1.27e-08;1!UBERON:0001831;2.55e-08;1!UBERON:0002135;2.55e-08;1!UBERON:0001567;2.55e-08;1!UBERON:0001155;1.02e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.52e-19,114;UBERON:0003978,1.55e-10,3;UBERON:0009751,1.55e-10,3;UBERON:0000946,1.55e-10,3;UBERON:0002523,1.55e-10,3;UBERON:0005983,1.55e-10,3;UBERON:0002165,1.55e-10,3;UBERON:0002062,1.55e-10,3;UBERON:0007280,1.55e-10,3;UBERON:0006834,6.50e-09,1;UBERON:0001000,8.15e-09,1;UBERON:0005352,8.15e-09,1;UBERON:0002146,8.78e-09,1;UBERON:0005623,8.78e-09,1;UBERON:0000989,1.10e-08,1;UBERON:0008811,1.10e-08,1;UBERON:0006258,1.10e-08,1;UBERON:0005876,1.10e-08,1;UBERON:0004874,1.10e-08,1;UBERON:0002135,2.84e-08,1;UBERON:0001831,3.06e-08,1;UBERON:0001567,3.06e-08,1;UBERON:0008801,3.06e-08,1;UBERON:0001155,9.15e-08,9 | |||
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|short_description=p6@ARHGEF25 | |||
}} |
Revision as of 23:43, 10 September 2013
Short description: | p6@ARHGEF25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_ARHGEF25_5end |
Coexpression cluster: | C2225_uterus_smooth_ductus_cervix_prostate_heart_umbilical |
Association with transcript: | -56bp_to_ENST00000300189, ENST00000333972, NM_001111270, uc009zpy.2_5end |
EntrezGene: | ARHGEF25 |
HGNC: | 30275 |
UniProt: | Q96M35F8W7Z4A9CQZ6Q86VW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.52e-19 | 114 |
valve | 1.55e-10 | 3 |
cardiac mesenchyme | 1.55e-10 | 3 |
cardial valve | 1.55e-10 | 3 |
tunica intima | 1.55e-10 | 3 |
heart layer | 1.55e-10 | 3 |
endocardium | 1.55e-10 | 3 |
endocardial cushion | 1.55e-10 | 3 |
presumptive endocardium | 1.55e-10 | 3 |
uterus or analog | 6.50e-09 | 1 |
vas deferens | 8.15e-09 | 1 |
spermatic cord | 8.15e-09 | 1 |
pulmonary valve | 8.78e-09 | 1 |
semi-lunar valve | 8.78e-09 | 1 |
penis | 1.10e-08 | 1 |
intromittent organ | 1.10e-08 | 1 |
lateral plate mesenchyme | 1.10e-08 | 1 |
undifferentiated genital tubercle | 1.10e-08 | 1 |
somatopleure | 1.10e-08 | 1 |
mitral valve | 2.84e-08 | 1 |
parotid gland | 3.06e-08 | 1 |
cheek | 3.06e-08 | 1 |
parotid gland primordium | 3.06e-08 | 1 |
colon | 9.15e-08 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.