FFCP PHASE1:Hg19::chr3:127770455..127770491,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=29927|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18276|TSSclassifier=S|UniProt=B4DR61|association_with_transcript=0bp_to_ENST00000464451_5end|description=CAGE_peak_4_at_SEC61A1_5end|id=chr3:127770455..127770491,+|ontology_enrichment_celltype=CL:0000066!1.09e-19!254;CL:0002321!1.65e-13!248;CL:0000220!3.66e-13!246;CL:0000223!4.39e-07!59|ontology_enrichment_celltype_v019=CL:1000507;9.17e-10;10!CL:1000494;9.17e-10;10!CL:1000449;2.19e-09;15!CL:1000497;5.39e-08;17!CL:0002518;5.39e-08;17!CL:0002681;1.37e-07;12!CL:0002584;1.37e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,6.94e-17,253;CL:1000507,1.12e-09,10;CL:1000494,1.12e-09,10;CL:0002321,2.20e-09,250;CL:1000449,3.42e-09,15;CL:1000497,7.88e-08,17;CL:0002518,7.88e-08,17;CL:0002681,2.26e-07,12;CL:0002584,2.26e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!2.79e-14!143;DOID:305!4.80e-11!106;DOID:14566!9.47e-10!239;DOID:162!2.24e-09!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000481!7.61e-08!347;UBERON:0006554!3.07e-07!44;UBERON:0000468!5.40e-07!659;UBERON:0000475!5.62e-07!365;UBERON:0001008!8.51e-07!45|ontology_enrichment_uberon_v019=UBERON:0004211;9.17e-10;10!UBERON:0009773;9.17e-10;10!UBERON:0001231;9.17e-10;10!UBERON:0004810;9.17e-10;10!UBERON:0006555;2.19e-09;15!UBERON:0004819;2.19e-09;15!UBERON:0001285;2.19e-09;15!UBERON:0007684;2.19e-09;15!UBERON:0002113;3.15e-09;24!UBERON:0011143;3.15e-09;24!UBERON:0001225;1.37e-07;12!UBERON:0008987;1.37e-07;12!UBERON:0001851;1.73e-07;15!UBERON:0000353;3.55e-07;15!UBERON:0000489;4.75e-07;29|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.12e-09,10;UBERON:0004211,3.42e-09,15;UBERON:0009773,3.42e-09,15;UBERON:0001231,3.42e-09,15;UBERON:0001285,3.42e-09,15;UBERON:0007684,3.42e-09,15;UBERON:0004208,3.42e-09,15;UBERON:0006555,1.82e-08,16;UBERON:0004819,1.82e-08,16;UBERON:0002113,4.44e-08,26;UBERON:0003918,4.44e-08,26;UBERON:0011143,4.44e-08,26;UBERON:0005095,4.44e-08,26;UBERON:0007687,4.44e-08,26;UBERON:0005177,1.97e-07,101;UBERON:0001225,2.26e-07,12;UBERON:0008987,2.26e-07,12;UBERON:0001851,2.70e-07,15;UBERON:0006554,5.00e-07,47;UBERON:0005172,6.41e-07,54;UBERON:0005173,6.41e-07,54;UBERON:0000353,7.43e-07,15;UBERON:0001008,8.72e-07,48|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0.872338524100369,0,0,0,2.94880723801811,5.58240934377942,2.40285509343189,1.05506791291381,0.123766352960047,0.994192127183747,1.34465029290355,0,0,0.975865597581014,0.738726348460727,0.816002764977012,0.626909442956176,0.286235987131057,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.383587685530591,0.361439152384566,0.50133791063589,0.434539556882471,0,0,0.567208902984407,1.55210578223795,0.527008714158756,0.458426764241994,0.364295288292542,0.370784442784429,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.633152558322899,0.529636723252875,0.573673241497627,0.354668382198357,0,1.06748995729705,0.24666754841716,0.311211035399766,0.538842688278752,0,0.756787138224657,0.576175924479999,5.15507150034353,0.312160076830321,0,0.597794722207204,0.117434498643765,0.161872944368132,0,0,0.245668634623536,0.103325781175765,0,0.741800787835671,0.910161361938026,0.718618141816238,0.336672227908132,0.125118519871964,0,0,0.30648779579902,0,0.113432183160021,0.358779271377724,0.427114777637135,0.211931901159562,0,0.618315175430633,1.03056216018252,0.18611685633159,0.168776332241266,0.68205903612839,0.252433774244115,0.368199594569197,0,0,0.201504196455281,0.169560592310488,0.57978255948989,0.272746120590835,0.286804595389004,0.365921118388786,0.795178609928912,0.348581828608555,1.14027160516907,1.00928340350251,0.72995471815166,0,0,1.38134921352481,0,0.721879481669586,0.591534000199219,0.168584690078102,1.20505514941741,0.55146986366197,0.217879444092406,0,1.21348177344148,0.784885860501384,0.38474715694639,0,0,1.6462960453256,0,1.26755034821831,0.982827216677626,0,0,0.368965315629341,0.171567810298526,1.20725313949488,0,0.603173834469785,0.277765335475589,3.25808305310325,0,0,0.34779121492523,0.70445216541493,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,2.85569617938061,0.850650583454319,0.179117045405697,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0.336393253036082,0,0.2933531432838,0.387815147273333,0,0,0.26593811658487,2.08014873822732,0.514414748524284,0,0,0.285955987316295,0,0.823240336780769,0,0.355391948742546,0,0,1.74306691720059,1.3996218765488,0,0,0,0.718874566474748,1.14861935834114,0,0.43434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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=29927 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18276 | |||
|TSSclassifier=S | |||
|UniProt=B4DR61 | |||
|association_with_transcript=0bp_to_ENST00000464451_5end | |||
|description=CAGE_peak_4_at_SEC61A1_5end | |||
|id=chr3:127770455..127770491,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.09e-19!254;CL:0002321!1.65e-13!248;CL:0000220!3.66e-13!246;CL:0000223!4.39e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.17e-10;10!CL:1000494;9.17e-10;10!CL:1000449;2.19e-09;15!CL:1000497;5.39e-08;17!CL:0002518;5.39e-08;17!CL:0002681;1.37e-07;12!CL:0002584;1.37e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.94e-17,253;CL:1000507,1.12e-09,10;CL:1000494,1.12e-09,10;CL:0002321,2.20e-09,250;CL:1000449,3.42e-09,15;CL:1000497,7.88e-08,17;CL:0002518,7.88e-08,17;CL:0002681,2.26e-07,12;CL:0002584,2.26e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.79e-14!143;DOID:305!4.80e-11!106;DOID:14566!9.47e-10!239;DOID:162!2.24e-09!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!7.61e-08!347;UBERON:0006554!3.07e-07!44;UBERON:0000468!5.40e-07!659;UBERON:0000475!5.62e-07!365;UBERON:0001008!8.51e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;9.17e-10;10!UBERON:0009773;9.17e-10;10!UBERON:0001231;9.17e-10;10!UBERON:0004810;9.17e-10;10!UBERON:0006555;2.19e-09;15!UBERON:0004819;2.19e-09;15!UBERON:0001285;2.19e-09;15!UBERON:0007684;2.19e-09;15!UBERON:0002113;3.15e-09;24!UBERON:0011143;3.15e-09;24!UBERON:0001225;1.37e-07;12!UBERON:0008987;1.37e-07;12!UBERON:0001851;1.73e-07;15!UBERON:0000353;3.55e-07;15!UBERON:0000489;4.75e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.12e-09,10;UBERON:0004211,3.42e-09,15;UBERON:0009773,3.42e-09,15;UBERON:0001231,3.42e-09,15;UBERON:0001285,3.42e-09,15;UBERON:0007684,3.42e-09,15;UBERON:0004208,3.42e-09,15;UBERON:0006555,1.82e-08,16;UBERON:0004819,1.82e-08,16;UBERON:0002113,4.44e-08,26;UBERON:0003918,4.44e-08,26;UBERON:0011143,4.44e-08,26;UBERON:0005095,4.44e-08,26;UBERON:0007687,4.44e-08,26;UBERON:0005177,1.97e-07,101;UBERON:0001225,2.26e-07,12;UBERON:0008987,2.26e-07,12;UBERON:0001851,2.70e-07,15;UBERON:0006554,5.00e-07,47;UBERON:0005172,6.41e-07,54;UBERON:0005173,6.41e-07,54;UBERON:0000353,7.43e-07,15;UBERON:0001008,8.72e-07,48 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0.872338524100369,0,0,0,2.94880723801811,5.58240934377942,2.40285509343189,1.05506791291381,0.123766352960047,0.994192127183747,1.34465029290355,0,0,0.975865597581014,0.738726348460727,0.816002764977012,0.626909442956176,0.286235987131057,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.383587685530591,0.361439152384566,0.50133791063589,0.434539556882471,0,0,0.567208902984407,1.55210578223795,0.527008714158756,0.458426764241994,0.364295288292542,0.370784442784429,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.633152558322899,0.529636723252875,0.573673241497627,0.354668382198357,0,1.06748995729705,0.24666754841716,0.311211035399766,0.538842688278752,0,0.756787138224657,0.576175924479999,5.15507150034353,0.312160076830321,0,0.597794722207204,0.117434498643765,0.161872944368132,0,0,0.245668634623536,0.103325781175765,0,0.741800787835671,0.910161361938026,0.718618141816238,0.336672227908132,0.125118519871964,0,0,0.30648779579902,0,0.113432183160021,0.358779271377724,0.427114777637135,0.211931901159562,0,0.618315175430633,1.03056216018252,0.18611685633159,0.168776332241266,0.68205903612839,0.252433774244115,0.368199594569197,0,0,0.201504196455281,0.169560592310488,0.57978255948989,0.272746120590835,0.286804595389004,0.365921118388786,0.795178609928912,0.348581828608555,1.14027160516907,1.00928340350251,0.72995471815166,0,0,1.38134921352481,0,0.721879481669586,0.591534000199219,0.168584690078102,1.20505514941741,0.55146986366197,0.217879444092406,0,1.21348177344148,0.784885860501384,0.38474715694639,0,0,1.6462960453256,0,1.26755034821831,0.982827216677626,0,0,0.368965315629341,0.171567810298526,1.20725313949488,0,0.603173834469785,0.277765335475589,3.25808305310325,0,0,0.34779121492523,0.70445216541493,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,2.85569617938061,0.850650583454319,0.179117045405697,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0.336393253036082,0,0.2933531432838,0.387815147273333,0,0,0.26593811658487,2.08014873822732,0.514414748524284,0,0,0.285955987316295,0,0.823240336780769,0,0.355391948742546,0,0,1.74306691720059,1.3996218765488,0,0,0,0.718874566474748,1.14861935834114,0,0.434343920002738,0.205476322550383,0,0,0,0,0,1.27047312111232,1.30139853857622,0,0.167516265334349,0,0,0,0,0.49076596687656,0,0.542530047399471,1.45579603071565,0.535286966391485,0.630809660135739,0.234282829985426,0,2.27407504055985,0,0,0.921845842708516,0.260650843404249,0.783204629850962,1.37257369524342,0,0.215714200818617,0,2.42502057157008,1.66435439510497,3.0239029332968,1.24053903909388,0.306923946576125,0.561320188866147,0.768834895534206,0,0.64341568457443,0,0.308419387605311,0,0.246381468041427,0.519254429183621,0.116210378459959,1.45031339509947,0.802025881213139,4.14364450211533,0.34444334449382,0.364182336013434,0.393373244878272,1.35359883872224,2.54150612444569,0.784349769176855,8.76835347919564,2.63879072232189,0,0.170093705276516,1.0795795805107,0,1.35473218771926,6.52196706011309,1.01950509218015,0.831076008928724,3.1342465661105,0,0,0,2.62411716559765,8.45983826127188,0.412164046590889,0.54941678891006,0.082509499920588,1.14853107599234,1.30012049207304,1.6068392984416,2.51343867559517,0.616194468458578,0.15350367472613,0.275673144969061,0.537101224341368,1.16013355131383,0.681813019328807,0.890320356467374,1.81813406897076,2.30628080838127,1.27612712494584,4.2486267959331,0.464845549297286,3.1481234683064,0,0.616067160352178,0,0,0.18532421910392,0.143124886741991,0.372158369359667,0.316379424718726,0,1.02359116524534,0,0,0.78494864019923,1.07923474549989,1.37268514868027,0.589062011728432,1.61745985258653,0,0.421258456238981,0,0.974853958525138,1.05650146756755,0.409499734223957,0.989838023675989,1.13008116620243,0,0,0.876901770507525,0,1.31178950409327,0.405820753925408,0,0.281695602532241,0.143411352204052,1.47373561519682,0,0,0.211107635297664,0.329294892959902,1.13841952129715,2.44954304171488,0.384888450902048,0,0,0,0.86101074534246,0,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,2.02965735142199,20.2120769605305,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614321404198464,0,0.140669416410513,0.445234820091624,0.494411622680279,1.05562704063997,0,0,0,0.306806047506464,0,0,0.269605053441981,0.358042349351218,0,0,0,0,1.93866549219044,0.371072392647405,0,0.7812832832557,0,0,0.227586896570999,0.508507300585533,0,0,0.583209226766509,1.21537496453305,0,0.241192877250816,0,0,0,0.438770794307945,1.634076952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| |||
|short_description=p4@SEC61A1 | |||
}} |
Revision as of 21:23, 12 September 2013
Short description: | p4@SEC61A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SEC61A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000464451_5end |
EntrezGene: | SEC61A1 |
HGNC: | 18276 |
UniProt: | B4DR61 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.94e-17 | 253 |
kidney tubule cell | 1.12e-09 | 10 |
nephron tubule epithelial cell | 1.12e-09 | 10 |
embryonic cell | 2.20e-09 | 250 |
epithelial cell of nephron | 3.42e-09 | 15 |
kidney cell | 7.88e-08 | 17 |
kidney epithelial cell | 7.88e-08 | 17 |
kidney cortical cell | 2.26e-07 | 12 |
renal cortical epithelial cell | 2.26e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.12e-09 | 10 |
nephron epithelium | 3.42e-09 | 15 |
renal tubule | 3.42e-09 | 15 |
nephron tubule | 3.42e-09 | 15 |
nephron | 3.42e-09 | 15 |
uriniferous tubule | 3.42e-09 | 15 |
nephrogenic mesenchyme | 3.42e-09 | 15 |
excretory tube | 1.82e-08 | 16 |
kidney epithelium | 1.82e-08 | 16 |
kidney | 4.44e-08 | 26 |
kidney mesenchyme | 4.44e-08 | 26 |
upper urinary tract | 4.44e-08 | 26 |
kidney rudiment | 4.44e-08 | 26 |
kidney field | 4.44e-08 | 26 |
trunk region element | 1.97e-07 | 101 |
cortex of kidney | 2.26e-07 | 12 |
renal parenchyma | 2.26e-07 | 12 |
cortex | 2.70e-07 | 15 |
urinary system structure | 5.00e-07 | 47 |
abdomen element | 6.41e-07 | 54 |
abdominal segment element | 6.41e-07 | 54 |
parenchyma | 7.43e-07 | 15 |
renal system | 8.72e-07 | 48 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.