FFCP PHASE1:Hg19::chr3:169487332..169487360,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84517|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=W|UniProt=Q9BYD9|association_with_transcript=322bp_to_ENST00000330368,NM_032487,uc003ffs.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_1_at_ARPM1_5end|id=chr3:169487332..169487360,-|ontology_enrichment_celltype=CL:0000055!3.88e-09!180|ontology_enrichment_celltype_v019=CL:0002549;1.16e-09;2!CL:0002559;1.30e-08;5!CL:0002166;5.55e-07;3|ontology_enrichment_celltype_v019_2=CL:0002549,8.99e-10,2;CL:0002559,6.18e-09,5;CL:0000346,4.88e-07,3;CL:1000428,4.88e-07,3;CL:0002166,5.33e-07,3;CL:0002590,8.06e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002200!2.95e-08!11;UBERON:0006876!2.95e-08!11;UBERON:0000475!1.74e-07!365;UBERON:0000468!2.58e-07!659;UBERON:0000914!6.78e-07!83;UBERON:0002329!6.78e-07!83;UBERON:0003077!6.78e-07!83;UBERON:0003059!6.78e-07!83;UBERON:0007282!6.78e-07!83;UBERON:0009618!6.78e-07!83;UBERON:0007285!6.78e-07!83|ontology_enrichment_uberon_v019=UBERON:0006876;1.97e-18;11!UBERON:0005284;4.13e-14;5!UBERON:0001708;1.18e-10;4!UBERON:0008895;1.18e-10;4!UBERON:0001801;1.32e-10;14!UBERON:0005629;1.16e-09;2!UBERON:0005358;1.16e-09;2!UBERON:0001886;1.16e-09;2!UBERON:0004086;1.16e-09;2!UBERON:0005282;1.16e-09;2!UBERON:0005281;1.16e-09;2!UBERON:0001456;3.25e-09;21!UBERON:0002073;1.30e-08;5!UBERON:0011159;1.30e-08;5!UBERON:0000019;1.18e-07;19!UBERON:0000047;1.18e-07;19!UBERON:0004088;1.18e-07;19!UBERON:0010230;1.18e-07;19!UBERON:0010371;1.50e-07;31!UBERON:0000970;3.04e-07;20!UBERON:0002203;4.82e-07;6!UBERON:0001768;4.82e-07;6!UBERON:0002200;4.82e-07;6!UBERON:0002104;7.20e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0006876,2.99e-18,11;UBERON:0005284,2.48e-14,5;UBERON:0001708,1.62e-10,4;UBERON:0008895,1.62e-10,4;UBERON:0001801,2.68e-10,14;UBERON:0005085,8.52e-10,31;UBERON:0005629,8.99e-10,2;UBERON:0005358,8.99e-10,2;UBERON:0001886,8.99e-10,2;UBERON:0004086,8.99e-10,2;UBERON:0005282,8.99e-10,2;UBERON:0005281,8.99e-10,2;UBERON:0002073,6.18e-09,5;UBERON:0005086,6.18e-09,5;UBERON:0011159,1.68e-08,5;UBERON:0001456,1.80e-08,22;UBERON:0010188,3.75e-07,6;UBERON:0002539,3.75e-07,6;UBERON:0008816,3.75e-07,6;UBERON:0000412,4.88e-07,3;UBERON:0001992,4.88e-07,3;UBERON:0000019,4.90e-07,20;UBERON:0000047,4.90e-07,20;UBERON:0010312,4.90e-07,20;UBERON:0004088,4.90e-07,20;UBERON:0010230,4.90e-07,20;UBERON:0003072,4.90e-07,20;UBERON:0004128,4.90e-07,20;UBERON:0003071,4.90e-07,20;UBERON:0002203,9.06e-07,6;UBERON:0001768,9.06e-07,6;UBERON:0002200,9.06e-07,6|phase1_expression=0.726713517082227,0.856402095563933,0.845726424575827,1.0007329835313,0.446961094427288,0,2.53299878168311,0,0.261185628199839,0.737201809504527,0.697801167972428,0.436882744260345,0.527533956456907,0.618831764800233,0.331397375727916,0,0.602694528023977,1.46062018077475,0.487932798790507,0.738726348460727,0,0.626909442956176,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0.142169232487422,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0.285012743741249,0,0.182664153764634,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.144846518960824,0,0.486634870302636,0.850813354476611,1.10864698731282,0.43917392846563,20.8911625418852,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,1.03366703667732,1.77883131343355,0.33472061276467,0,0,0,0.367663080345869,0,0.0892997282840798,0.44905874525234,0.225222960966644,0,0,0.183201743930407,0,0,0.436094052142534,0,0.379891534993739,0.926864265692532,0,0.354668382198357,0,1.06748995729705,0.98667019366864,0.311211035399766,0.134710672069688,0.326923806226917,1.66493170409425,1.15235184896,0,0,0.570471821544449,0.298897361103602,0.23486899728753,0.161872944368132,0.280901613404497,0.408308342509787,0.122834317311768,0.516628905878827,0,0,0,0,0.168336113954066,0.375355559615893,0,0,0.30648779579902,0.150238058906597,0.226864366320042,0.179389635688862,0,0,0.300091096084402,0.515262646192195,0.515281080091258,0.37223371266318,0.168776332241266,0.0974370051611986,0,0.552299391853796,0.161646056818812,0.355009592516614,0.302256294682921,0.339121184620975,1.15956511897978,0.272746120590835,0.573609190778008,0.487894824518382,0.662648841607426,0.464775771478074,0.10366105501537,0.252320850875628,0,1.56449532329816,1.92972281457866,0,2.78620756819187,0,0.236613600079688,0,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0,0,0,0,1.2347220339942,0,0,0,0,0,0,1.02940686179115,0.98775256867763,0,0.201057944823262,0.0925884451585296,0.325808305310325,1.03993478527958,1.44331342025273,1.1593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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84517 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=W | |||
|UniProt=Q9BYD9 | |||
|association_with_transcript=322bp_to_ENST00000330368,NM_032487,uc003ffs.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_ARPM1_5end | |||
|id=chr3:169487332..169487360,- | |||
|ontology_enrichment_celltype=CL:0000055!3.88e-09!180 | |||
|ontology_enrichment_celltype_v019=CL:0002549;1.16e-09;2!CL:0002559;1.30e-08;5!CL:0002166;5.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,8.99e-10,2;CL:0002559,6.18e-09,5;CL:0000346,4.88e-07,3;CL:1000428,4.88e-07,3;CL:0002166,5.33e-07,3;CL:0002590,8.06e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002200!2.95e-08!11;UBERON:0006876!2.95e-08!11;UBERON:0000475!1.74e-07!365;UBERON:0000468!2.58e-07!659;UBERON:0000914!6.78e-07!83;UBERON:0002329!6.78e-07!83;UBERON:0003077!6.78e-07!83;UBERON:0003059!6.78e-07!83;UBERON:0007282!6.78e-07!83;UBERON:0009618!6.78e-07!83;UBERON:0007285!6.78e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;1.97e-18;11!UBERON:0005284;4.13e-14;5!UBERON:0001708;1.18e-10;4!UBERON:0008895;1.18e-10;4!UBERON:0001801;1.32e-10;14!UBERON:0005629;1.16e-09;2!UBERON:0005358;1.16e-09;2!UBERON:0001886;1.16e-09;2!UBERON:0004086;1.16e-09;2!UBERON:0005282;1.16e-09;2!UBERON:0005281;1.16e-09;2!UBERON:0001456;3.25e-09;21!UBERON:0002073;1.30e-08;5!UBERON:0011159;1.30e-08;5!UBERON:0000019;1.18e-07;19!UBERON:0000047;1.18e-07;19!UBERON:0004088;1.18e-07;19!UBERON:0010230;1.18e-07;19!UBERON:0010371;1.50e-07;31!UBERON:0000970;3.04e-07;20!UBERON:0002203;4.82e-07;6!UBERON:0001768;4.82e-07;6!UBERON:0002200;4.82e-07;6!UBERON:0002104;7.20e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,2.99e-18,11;UBERON:0005284,2.48e-14,5;UBERON:0001708,1.62e-10,4;UBERON:0008895,1.62e-10,4;UBERON:0001801,2.68e-10,14;UBERON:0005085,8.52e-10,31;UBERON:0005629,8.99e-10,2;UBERON:0005358,8.99e-10,2;UBERON:0001886,8.99e-10,2;UBERON:0004086,8.99e-10,2;UBERON:0005282,8.99e-10,2;UBERON:0005281,8.99e-10,2;UBERON:0002073,6.18e-09,5;UBERON:0005086,6.18e-09,5;UBERON:0011159,1.68e-08,5;UBERON:0001456,1.80e-08,22;UBERON:0010188,3.75e-07,6;UBERON:0002539,3.75e-07,6;UBERON:0008816,3.75e-07,6;UBERON:0000412,4.88e-07,3;UBERON:0001992,4.88e-07,3;UBERON:0000019,4.90e-07,20;UBERON:0000047,4.90e-07,20;UBERON:0010312,4.90e-07,20;UBERON:0004088,4.90e-07,20;UBERON:0010230,4.90e-07,20;UBERON:0003072,4.90e-07,20;UBERON:0004128,4.90e-07,20;UBERON:0003071,4.90e-07,20;UBERON:0002203,9.06e-07,6;UBERON:0001768,9.06e-07,6;UBERON:0002200,9.06e-07,6 | |||
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| |||
|short_description=p1@ARPM1 | |||
}} |
Revision as of 22:38, 12 September 2013
Short description: | p1@ARPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ARPM1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 322bp_to_ENST00000330368, NM_032487, uc003ffs.1_5end |
EntrezGene: | ARPM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 8.99e-10 | 2 |
hair follicle cell | 6.18e-09 | 5 |
hair follicle dermal papilla cell | 4.88e-07 | 3 |
stem cell of epidermis | 4.88e-07 | 3 |
epithelial cell of Malassez | 5.33e-07 | 3 |
smooth muscle cell of the brain vasculature | 8.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 2.99e-18 | 11 |
brain vasculature | 2.48e-14 | 5 |
jaw skeleton | 1.62e-10 | 4 |
splanchnocranium | 1.62e-10 | 4 |
anterior segment of eyeball | 2.68e-10 | 14 |
ectodermal placode | 8.52e-10 | 31 |
vascular plexus | 8.99e-10 | 2 |
ventricle of nervous system | 8.99e-10 | 2 |
choroid plexus | 8.99e-10 | 2 |
brain ventricle | 8.99e-10 | 2 |
ventricular system of brain | 8.99e-10 | 2 |
ventricular system of central nervous system | 8.99e-10 | 2 |
hair follicle | 6.18e-09 | 5 |
hair follicle placode | 6.18e-09 | 5 |
primary subdivision of cranial skeletal system | 1.68e-08 | 5 |
face | 1.80e-08 | 22 |
protuberance | 3.75e-07 | 6 |
pharyngeal arch | 3.75e-07 | 6 |
embryonic head | 3.75e-07 | 6 |
dermal papilla | 4.88e-07 | 3 |
papillary layer of dermis | 4.88e-07 | 3 |
camera-type eye | 4.90e-07 | 20 |
simple eye | 4.90e-07 | 20 |
immature eye | 4.90e-07 | 20 |
ocular region | 4.90e-07 | 20 |
eyeball of camera-type eye | 4.90e-07 | 20 |
optic cup | 4.90e-07 | 20 |
optic vesicle | 4.90e-07 | 20 |
eye primordium | 4.90e-07 | 20 |
vasculature of eye | 9.06e-07 | 6 |
uvea | 9.06e-07 | 6 |
vasculature of head | 9.06e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.