FFCP PHASE1:Hg19::chr5:82835589..82835617,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C456|description=CAGE_peak_at_chr5:82835589..82835617,+|id=chr5:82835589..82835617,+|ontology_enrichment_celltype=CL:0002057!7.06e-20!42;CL:0000860!2.51e-17!45;CL:0000055!1.22e-12!180;CL:0000048!3.71e-11!430;CL:0000723!1.82e-10!436;CL:0000057!3.10e-10!75;CL:0000034!3.44e-10!444;CL:0002194!2.94e-09!63;CL:0000576!2.94e-09!63;CL:0000040!2.94e-09!63;CL:0000559!2.94e-09!63;CL:0002009!1.60e-08!65;CL:0000393!6.72e-08!60;CL:0000211!6.72e-08!60;CL:0002334!1.22e-07!12;CL:0000839!6.37e-07!70|ontology_enrichment_celltype_v019=CL:0000860;1.60e-19;33!CL:0002057;1.60e-19;33!CL:0000473;9.63e-14;39!CL:0000234;9.63e-14;39!CL:0002334;2.37e-12;12!CL:0000576;8.86e-11;48|ontology_enrichment_celltype_v019_2=CL:0000860,2.21e-20,42;CL:0002057,2.21e-20,42;CL:0000048,4.69e-17,427;CL:0000473,1.27e-16,48;CL:0000234,1.27e-16,48;CL:0000723,2.36e-16,433;CL:0000034,1.89e-15,441;CL:0000134,2.20e-13,354;CL:0002320,4.24e-13,361;CL:0002334,1.12e-12,12;CL:0002194,1.78e-11,59;CL:0000576,1.78e-11,59;CL:0000040,1.78e-11,59;CL:0000559,1.78e-11,59;CL:0002009,7.94e-11,61;CL:0000219,1.09e-10,386;CL:0000057,1.55e-10,76;CL:0000839,2.16e-09,66;CL:0000557,3.93e-09,67;CL:0000766,5.85e-08,72|ontology_enrichment_development_v019=CL:0002057;1.60e-15;42|ontology_enrichment_disease=DOID:2394!2.86e-08!14|ontology_enrichment_disease_v019=DOID:2394;4.00e-11;14|ontology_enrichment_disease_v019_2=DOID:2394,7.22e-11,14|ontology_enrichment_uberon=UBERON:0002204!2.07e-12!167;UBERON:0000468!2.17e-10!659;UBERON:0000467!4.04e-09!625;UBERON:0000480!5.54e-09!626|ontology_enrichment_uberon_v019=UBERON:0004457;6.12e-07;9!UBERON:0000042;6.12e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.89e-13,371;UBERON:0000926,7.35e-12,315;UBERON:0004120,7.35e-12,315;UBERON:0006603,7.35e-12,315;UBERON:0002204,5.90e-10,167;UBERON:0002371,4.19e-09,76;UBERON:0001474,2.06e-08,82;UBERON:0003081,3.60e-08,203;UBERON:0004765,1.66e-07,90;UBERON:0001434,3.89e-07,100;UBERON:0004797,4.87e-07,7;UBERON:0002390,8.91e-07,98;UBERON:0003061,8.91e-07,98|phase1_expression=1.09007027562334,2.99740733447376,2.81908808191942,0,1.78784437770915,4.36169262050184,0,0,0.783556884599516,0,0,0,0,0.247532705920093,0,4.03395087871065,6.02694528023977,2.19093027116212,2.43966399395253,0,0,0,0.85870796139317,0.821246550437305,1.00434111675842,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,2.21598163412751,6.01633342410425,4.77423915574874,0,0,0,3.78035420826868,0.755751887377619,1.21292030593908,7.43772918098191,0.822335776043652,1.54853185447552,4.89077066947656,3.58624989140741,1.18241114944293,5.17118521104928,4.51839278508678,1.35426486594342,10.5415710143859,0.818718450173537,0.898893937780338,7.03992952453076,0.962787081228281,2.55734850319616,5.27762080298746,2.59302754908121,0.852449501065388,13.930043454172,2.26954089876456,1.24564449799115,10.0499466102697,4.69334626578181,0.868755378820466,2.42159801053347,2.57794345191295,2.21523671208619,0.211255286311942,0.212604299965044,0.628975936525128,2.2465726229299,2.25265339262259,2.73233497385036,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0,0,0,0,0,0,0,0,2.68280343881454,0.383587685530591,0.722878304769133,1.00267582127178,0.289693037921647,0,0,1.32348744029695,2.21729397462564,1.75669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4666914686485,3.03913227994991,3.97227542439656,15.4891775204359,2.83734705758686,1.68203280042692,2.1349799145941,1.2333377420858,0.311211035399766,0.808264032418128,0.490385709340376,0,0.576175924479999,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0.245668634623536,0.413303124703062,1.18800285728205,1.97813543422845,0,0,0.505008341862199,0.250237039743928,0,0,0.30648779579902,0.901428353439581,0.567160915800105,3.58779271377724,2.13557388818567,1.90738711043606,1.50045548042201,0.309157587715317,1.03056216018252,0.37223371266318,1.68776332241266,1.26668106709558,2.77677151668526,0.368199594569197,0.484938170456436,1.06502877754984,0.806016785821122,0,0.193260853163297,0,0,0.243947412259191,0,0.580969714347592,0.725627385107593,0,1.09493207722749,0,2.57296375277154,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.185176890317059,0,0,1.44331342025273,0,3.87448690978212,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,1.93907573636667,0,0.845302752556,1.59562869950922,0,0,0,0,0.428933980974443,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.958499421966331,0,0,0.579125226670317,0,0.537182889719687,0,0,0,0.256686072559497,0,0,0,0.837581326671744,0.637938751653163,0,0,0,0.36807447515742,1.50051156317903,0,2.28767947683888,3.39015078714607,0.946214490203608,1.05427273493442,0,0,2.0694614258501,1.32845119707087,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_at_chr5:82835589..82835617,+ | |||
|id=chr5:82835589..82835617,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.06e-20!42;CL:0000860!2.51e-17!45;CL:0000055!1.22e-12!180;CL:0000048!3.71e-11!430;CL:0000723!1.82e-10!436;CL:0000057!3.10e-10!75;CL:0000034!3.44e-10!444;CL:0002194!2.94e-09!63;CL:0000576!2.94e-09!63;CL:0000040!2.94e-09!63;CL:0000559!2.94e-09!63;CL:0002009!1.60e-08!65;CL:0000393!6.72e-08!60;CL:0000211!6.72e-08!60;CL:0002334!1.22e-07!12;CL:0000839!6.37e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.60e-19;33!CL:0002057;1.60e-19;33!CL:0000473;9.63e-14;39!CL:0000234;9.63e-14;39!CL:0002334;2.37e-12;12!CL:0000576;8.86e-11;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.21e-20,42;CL:0002057,2.21e-20,42;CL:0000048,4.69e-17,427;CL:0000473,1.27e-16,48;CL:0000234,1.27e-16,48;CL:0000723,2.36e-16,433;CL:0000034,1.89e-15,441;CL:0000134,2.20e-13,354;CL:0002320,4.24e-13,361;CL:0002334,1.12e-12,12;CL:0002194,1.78e-11,59;CL:0000576,1.78e-11,59;CL:0000040,1.78e-11,59;CL:0000559,1.78e-11,59;CL:0002009,7.94e-11,61;CL:0000219,1.09e-10,386;CL:0000057,1.55e-10,76;CL:0000839,2.16e-09,66;CL:0000557,3.93e-09,67;CL:0000766,5.85e-08,72 | |||
|ontology_enrichment_development_v019=CL:0002057;1.60e-15;42 | |||
|ontology_enrichment_disease=DOID:2394!2.86e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.00e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.22e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!2.07e-12!167;UBERON:0000468!2.17e-10!659;UBERON:0000467!4.04e-09!625;UBERON:0000480!5.54e-09!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;6.12e-07;9!UBERON:0000042;6.12e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.89e-13,371;UBERON:0000926,7.35e-12,315;UBERON:0004120,7.35e-12,315;UBERON:0006603,7.35e-12,315;UBERON:0002204,5.90e-10,167;UBERON:0002371,4.19e-09,76;UBERON:0001474,2.06e-08,82;UBERON:0003081,3.60e-08,203;UBERON:0004765,1.66e-07,90;UBERON:0001434,3.89e-07,100;UBERON:0004797,4.87e-07,7;UBERON:0002390,8.91e-07,98;UBERON:0003061,8.91e-07,98 | |||
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| |||
|short_description=p@chr5:82835589..82835617,+ | |||
}} |
Revision as of 16:43, 13 September 2013
Short description: | p@chr5:82835589..82835617, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:82835589..82835617, + |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.21e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.21e-20 | 42 |
multi fate stem cell | 4.69e-17 | 427 |
defensive cell | 1.27e-16 | 48 |
phagocyte | 1.27e-16 | 48 |
somatic stem cell | 2.36e-16 | 433 |
stem cell | 1.89e-15 | 441 |
mesenchymal cell | 2.20e-13 | 354 |
connective tissue cell | 4.24e-13 | 361 |
preadipocyte | 1.12e-12 | 12 |
monopoietic cell | 1.78e-11 | 59 |
monocyte | 1.78e-11 | 59 |
monoblast | 1.78e-11 | 59 |
promonocyte | 1.78e-11 | 59 |
macrophage dendritic cell progenitor | 7.94e-11 | 61 |
motile cell | 1.09e-10 | 386 |
fibroblast | 1.55e-10 | 76 |
myeloid lineage restricted progenitor cell | 2.16e-09 | 66 |
granulocyte monocyte progenitor cell | 3.93e-09 | 67 |
myeloid leukocyte | 5.85e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.89e-13 | 371 |
mesoderm | 7.35e-12 | 315 |
mesoderm-derived structure | 7.35e-12 | 315 |
presumptive mesoderm | 7.35e-12 | 315 |
musculoskeletal system | 5.90e-10 | 167 |
bone marrow | 4.19e-09 | 76 |
bone element | 2.06e-08 | 82 |
lateral plate mesoderm | 3.60e-08 | 203 |
skeletal element | 1.66e-07 | 90 |
skeletal system | 3.89e-07 | 100 |
blood vessel layer | 4.87e-07 | 7 |
hematopoietic system | 8.91e-07 | 98 |
blood island | 8.91e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.22e-11 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.