FFCP PHASE1:Hg19::chr6:31239055..31239088,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3107|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=4933|TSSclassifier=S|UniProt=Q14838|association_with_transcript=-73bp_to_M12679_5end|coexpression_cluster_id=C13|description=CAGE_peak_5_at_HLA-C_5end|id=chr6:31239055..31239088,-|ontology_enrichment_celltype=CL:0000738!1.36e-22!140;CL:0000766!6.52e-21!76;CL:0002057!1.54e-20!42;CL:0000860!1.07e-19!45;CL:0002087!1.59e-19!119;CL:0002009!1.86e-19!65;CL:0002194!9.65e-19!63;CL:0000576!9.65e-19!63;CL:0000040!9.65e-19!63;CL:0000559!9.65e-19!63;CL:0002031!2.06e-18!124;CL:0000557!4.62e-18!71;CL:0000839!5.23e-17!70;CL:0000988!4.09e-13!182;CL:0000037!1.43e-12!172;CL:0000566!1.43e-12!172;CL:0002032!2.79e-12!165;CL:0000837!2.79e-12!165;CL:0000763!7.63e-10!112;CL:0000049!7.63e-10!112;CL:0000134!4.93e-07!358|ontology_enrichment_celltype_v019=CL:0000860;4.68e-24;33!CL:0002057;4.68e-24;33!CL:0000473;5.38e-22;39!CL:0000234;5.38e-22;39!CL:0000576;2.86e-20;48!CL:0000766;5.48e-16;69!CL:0002087;1.51e-09;104!CL:0000738;1.74e-07;136|ontology_enrichment_celltype_v019_2=CL:0000766,6.54e-34,72;CL:0000473,7.13e-34,48;CL:0000234,7.13e-34,48;CL:0002009,6.66e-33,61;CL:0002194,9.01e-32,59;CL:0000576,9.01e-32,59;CL:0000040,9.01e-32,59;CL:0000559,9.01e-32,59;CL:0000860,4.59e-31,42;CL:0002057,4.59e-31,42;CL:0000738,6.22e-31,136;CL:0000557,2.54e-29,67;CL:0000839,1.75e-27,66;CL:0002087,1.67e-26,115;CL:0002031,3.69e-24,120;CL:0000037,1.74e-21,168;CL:0000763,2.16e-21,108;CL:0000049,2.16e-21,108;CL:0000988,9.20e-21,177;CL:0002032,1.06e-20,161;CL:0000837,1.06e-20,161;CL:0000134,4.15e-10,354;CL:0002320,1.43e-09,361;CL:0000219,3.37e-07,386;CL:0000048,7.42e-07,427|ontology_enrichment_development_v019=CL:0002057;7.56e-22;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!9.08e-20!102;UBERON:0003061!9.08e-20!102;UBERON:0002193!5.11e-19!112;UBERON:0002371!8.63e-16!80;UBERON:0001474!4.09e-14!86;UBERON:0002405!6.85e-13!115;UBERON:0003081!1.73e-12!216;UBERON:0004765!4.10e-11!101;UBERON:0001434!4.10e-11!101;UBERON:0002204!2.29e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.78e-28,98;UBERON:0003061,5.78e-28,98;UBERON:0002193,3.70e-26,108;UBERON:0002371,8.55e-26,76;UBERON:0001474,1.97e-23,82;UBERON:0002405,2.90e-22,93;UBERON:0004765,1.64e-20,90;UBERON:0001434,3.85e-18,100;UBERON:0003081,8.91e-16,203;UBERON:0002204,2.42e-10,167;UBERON:0002384,3.72e-09,371;UBERON:0000926,4.58e-09,315;UBERON:0004120,4.58e-09,315;UBERON:0006603,4.58e-09,315|phase1_expression=0.181678379270557,0.214100523890983,0,2.00146596706261,0,1.74467704820074,0,0,0.522371256399677,0.245733936501509,1.39560233594486,0.436882744260345,0,0.123766352960047,0,2.01697543935533,0.602694528023977,0,0.975865597581014,0.369363174230364,0.612002073732759,0.313454721478088,0,0.410623275218653,0.627713197974014,1.06978768047132,0.57470412614962,0.629686250509434,4.72037132218685,1.15148819429164,4.33485145285013,1.83884244895785,0.90361775633475,0.369754010166788,0.92960640696362,0,1.17440175733939,2.76997704265939,0,10.199510923645,2.01523926815932,2.26725566213286,3.34848237924443,1.30858414901608,4.53451132426571,5.09426528494414,0.464858073811369,4.52284676824008,8.05236564327269,2.01384674625505,6.14785695669842,14.4254160232037,2.41321976515633,3.22742341791913,10.8341189275473,2.07066573496865,4.09359225086769,7.41587498668779,2.75475503133812,3.20929027076094,6.39337125799041,1.64925650093358,5.78444607102732,6.39337125799041,2.61188314765726,6.24123747160254,4.9825779919646,3.01498398308092,9.90817544998383,8.03598725408932,3.02699751316684,4.41933163185078,12.3420331101945,4.64761629886272,6.16552469898626,1.88692780957538,3.36985893439485,4.6554836780867,1.92870704036496,1.42506371870624,5.56966696157452,2.55729815270488,0,0.546138611262131,0,3.41384178053206,2.80277190925209,0,0,0,2.84606484554724,2.93618594685469,0,0,1.12101712596307,0.526768169550154,2.75393678159366,0,9.45766895397742,3.17654341242288,4.56291173287027,3.31413464014313,5.84480185223734,5.01347055983281,5.30290633454707,5.98141515375777,4.87446954777028,4.86747014957566,4.29195846947598,2.95988228286617,1.38175008892924,1.44901542867526,3.55887751588945,4.81573490561484,3.1360657141493,1.58633079776593,3.83220493601921,4.12352934579156,4.55435445635105,0.318565414324097,1.30216690771284,0.950452044448374,4.81840381048873,3.19966527886046,1.24930726552346,0.710331756132051,0.821127996921047,3.02410114837099,0.802320587350522,9.26876184849914,0,0.670700859703636,0.255725123687061,0,0,0.869079113764942,0.795285947051099,10.705967146658,0.378139268656271,0.443458794925128,0.527008714158756,0.785874452986276,0,1.48313777113772,1.29818957461873,3.13433527138681,2.92507513141503,0.238490624305342,0,0,1.59009925893364,0,0.694281003215189,0,0.419499436209906,0.825354125820202,0.626984899610432,0.775250277507987,0,0,1.20848795132744,0,2.19655851793353,0,1.62028389576352,0.625098097988558,0,0.22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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3107 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4933 | |||
|TSSclassifier=S | |||
|UniProt=Q14838 | |||
|association_with_transcript=-73bp_to_M12679_5end | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_5_at_HLA-C_5end | |||
|id=chr6:31239055..31239088,- | |||
|ontology_enrichment_celltype=CL:0000738!1.36e-22!140;CL:0000766!6.52e-21!76;CL:0002057!1.54e-20!42;CL:0000860!1.07e-19!45;CL:0002087!1.59e-19!119;CL:0002009!1.86e-19!65;CL:0002194!9.65e-19!63;CL:0000576!9.65e-19!63;CL:0000040!9.65e-19!63;CL:0000559!9.65e-19!63;CL:0002031!2.06e-18!124;CL:0000557!4.62e-18!71;CL:0000839!5.23e-17!70;CL:0000988!4.09e-13!182;CL:0000037!1.43e-12!172;CL:0000566!1.43e-12!172;CL:0002032!2.79e-12!165;CL:0000837!2.79e-12!165;CL:0000763!7.63e-10!112;CL:0000049!7.63e-10!112;CL:0000134!4.93e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.68e-24;33!CL:0002057;4.68e-24;33!CL:0000473;5.38e-22;39!CL:0000234;5.38e-22;39!CL:0000576;2.86e-20;48!CL:0000766;5.48e-16;69!CL:0002087;1.51e-09;104!CL:0000738;1.74e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.54e-34,72;CL:0000473,7.13e-34,48;CL:0000234,7.13e-34,48;CL:0002009,6.66e-33,61;CL:0002194,9.01e-32,59;CL:0000576,9.01e-32,59;CL:0000040,9.01e-32,59;CL:0000559,9.01e-32,59;CL:0000860,4.59e-31,42;CL:0002057,4.59e-31,42;CL:0000738,6.22e-31,136;CL:0000557,2.54e-29,67;CL:0000839,1.75e-27,66;CL:0002087,1.67e-26,115;CL:0002031,3.69e-24,120;CL:0000037,1.74e-21,168;CL:0000763,2.16e-21,108;CL:0000049,2.16e-21,108;CL:0000988,9.20e-21,177;CL:0002032,1.06e-20,161;CL:0000837,1.06e-20,161;CL:0000134,4.15e-10,354;CL:0002320,1.43e-09,361;CL:0000219,3.37e-07,386;CL:0000048,7.42e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;7.56e-22;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.08e-20!102;UBERON:0003061!9.08e-20!102;UBERON:0002193!5.11e-19!112;UBERON:0002371!8.63e-16!80;UBERON:0001474!4.09e-14!86;UBERON:0002405!6.85e-13!115;UBERON:0003081!1.73e-12!216;UBERON:0004765!4.10e-11!101;UBERON:0001434!4.10e-11!101;UBERON:0002204!2.29e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.78e-28,98;UBERON:0003061,5.78e-28,98;UBERON:0002193,3.70e-26,108;UBERON:0002371,8.55e-26,76;UBERON:0001474,1.97e-23,82;UBERON:0002405,2.90e-22,93;UBERON:0004765,1.64e-20,90;UBERON:0001434,3.85e-18,100;UBERON:0003081,8.91e-16,203;UBERON:0002204,2.42e-10,167;UBERON:0002384,3.72e-09,371;UBERON:0000926,4.58e-09,315;UBERON:0004120,4.58e-09,315;UBERON:0006603,4.58e-09,315 | |||
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| |||
|short_description=p5@HLA-C | |||
}} |
Revision as of 20:08, 13 September 2013
Short description: | p5@HLA-C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_HLA-C_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -73bp_to_M12679_5end |
EntrezGene: | HLA-C |
HGNC: | 4933 |
UniProt: | Q14838 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.54e-34 | 72 |
defensive cell | 7.13e-34 | 48 |
phagocyte | 7.13e-34 | 48 |
macrophage dendritic cell progenitor | 6.66e-33 | 61 |
monopoietic cell | 9.01e-32 | 59 |
monocyte | 9.01e-32 | 59 |
monoblast | 9.01e-32 | 59 |
promonocyte | 9.01e-32 | 59 |
classical monocyte | 4.59e-31 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.59e-31 | 42 |
leukocyte | 6.22e-31 | 136 |
granulocyte monocyte progenitor cell | 2.54e-29 | 67 |
myeloid lineage restricted progenitor cell | 1.75e-27 | 66 |
nongranular leukocyte | 1.67e-26 | 115 |
hematopoietic lineage restricted progenitor cell | 3.69e-24 | 120 |
hematopoietic stem cell | 1.74e-21 | 168 |
myeloid cell | 2.16e-21 | 108 |
common myeloid progenitor | 2.16e-21 | 108 |
hematopoietic cell | 9.20e-21 | 177 |
hematopoietic oligopotent progenitor cell | 1.06e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.06e-20 | 161 |
mesenchymal cell | 4.15e-10 | 354 |
connective tissue cell | 1.43e-09 | 361 |
motile cell | 3.37e-07 | 386 |
multi fate stem cell | 7.42e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.78e-28 | 98 |
blood island | 5.78e-28 | 98 |
hemolymphoid system | 3.70e-26 | 108 |
bone marrow | 8.55e-26 | 76 |
bone element | 1.97e-23 | 82 |
immune system | 2.90e-22 | 93 |
skeletal element | 1.64e-20 | 90 |
skeletal system | 3.85e-18 | 100 |
lateral plate mesoderm | 8.91e-16 | 203 |
musculoskeletal system | 2.42e-10 | 167 |
connective tissue | 3.72e-09 | 371 |
mesoderm | 4.58e-09 | 315 |
mesoderm-derived structure | 4.58e-09 | 315 |
presumptive mesoderm | 4.58e-09 | 315 |
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