FFCP PHASE1:Hg19::chr12:498500..498529,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84318 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28203 | |||
|TSSclassifier=strong | |||
|UniProt=B4DDE8,F5H5Q8,Q9BR77 | |||
|association_with_transcript=0bp_to_ENST00000422000,ENST00000535052,ENST00000540180,NM_001130147,NM_001130148,uc009zdk.2,uc010sdp.1_5end | |||
|description=CAGE_peak_2_at_CCDC77_5end | |||
|id=chr12:498500..498529,+ | |||
|ontology_enrichment_celltype=CL:0002087!4.76e-12!119;CL:0000738!5.50e-12!140;CL:0002031!9.00e-12!124;CL:0000037!1.25e-10!172;CL:0000566!1.25e-10!172;CL:0002032!3.13e-10!165;CL:0000837!3.13e-10!165;CL:0000988!3.52e-09!182;CL:0000557!7.77e-09!71;CL:0000860!1.38e-08!45;CL:0002057!1.70e-08!42;CL:0000766!1.13e-07!76;CL:0002009!1.26e-07!65;CL:0002194!1.66e-07!63;CL:0000576!1.66e-07!63;CL:0000040!1.66e-07!63;CL:0000559!1.66e-07!63;CL:0000839!2.11e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.04e-09;33!CL:0002057;4.04e-09;33!CL:0000473;4.68e-08;39!CL:0000234;4.68e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,6.06e-12,115;CL:0000738,6.52e-12,136;CL:0002031,1.17e-11,120;CL:0000037,2.45e-10,168;CL:0002032,6.09e-10,161;CL:0000837,6.09e-10,161;CL:0000988,2.66e-09,177;CL:0000557,5.90e-09,67;CL:0000473,1.57e-08,48;CL:0000234,1.57e-08,48;CL:0000860,1.60e-08,42;CL:0002057,1.60e-08,42;CL:0000766,8.57e-08,72;CL:0002009,1.01e-07,61;CL:0002194,1.31e-07,59;CL:0000576,1.31e-07,59;CL:0000040,1.31e-07,59;CL:0000559,1.31e-07,59;CL:0000839,1.79e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.23e-11!102;UBERON:0003061!6.23e-11!102;UBERON:0002193!1.11e-09!112;UBERON:0001049!4.63e-09!57;UBERON:0005068!4.63e-09!57;UBERON:0006241!4.63e-09!57;UBERON:0007135!4.63e-09!57;UBERON:0002371!5.43e-08!80;UBERON:0002780!6.15e-08!41;UBERON:0001890!6.15e-08!41;UBERON:0006240!6.15e-08!41;UBERON:0001474!1.69e-07!86;UBERON:0003080!2.70e-07!42;UBERON:0002616!9.85e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.83e-11,98;UBERON:0003061,4.83e-11,98;UBERON:0001049,8.36e-10,56;UBERON:0005068,8.36e-10,56;UBERON:0006241,8.36e-10,56;UBERON:0007135,8.36e-10,56;UBERON:0002193,8.51e-10,108;UBERON:0000073,6.05e-09,53;UBERON:0002616,6.05e-09,53;UBERON:0002371,5.07e-08,76;UBERON:0002780,5.81e-08,41;UBERON:0001890,5.81e-08,41;UBERON:0003080,5.81e-08,41;UBERON:0006240,5.81e-08,41;UBERON:0001474,1.67e-07,82;UBERON:0002405,3.50e-07,93 | |||
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| |||
|short_description=p2@CCDC77 | |||
}} |
Revision as of 11:23, 11 January 2014
Short description: | p2@CCDC77 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCDC77_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000422000, ENST00000535052, ENST00000540180, NM_001130147, NM_001130148, uc009zdk.2, uc010sdp.1_5end |
EntrezGene: | CCDC77 |
HGNC: | 28203 |
UniProt: | B4DDE8F5H5Q8Q9BR77 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 6.06e-12 | 115 |
leukocyte | 6.52e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 1.17e-11 | 120 |
hematopoietic stem cell | 2.45e-10 | 168 |
hematopoietic oligopotent progenitor cell | 6.09e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.09e-10 | 161 |
hematopoietic cell | 2.66e-09 | 177 |
granulocyte monocyte progenitor cell | 5.90e-09 | 67 |
defensive cell | 1.57e-08 | 48 |
phagocyte | 1.57e-08 | 48 |
classical monocyte | 1.60e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.60e-08 | 42 |
myeloid leukocyte | 8.57e-08 | 72 |
macrophage dendritic cell progenitor | 1.01e-07 | 61 |
monopoietic cell | 1.31e-07 | 59 |
monocyte | 1.31e-07 | 59 |
monoblast | 1.31e-07 | 59 |
promonocyte | 1.31e-07 | 59 |
myeloid lineage restricted progenitor cell | 1.79e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.83e-11 | 98 |
blood island | 4.83e-11 | 98 |
neural tube | 8.36e-10 | 56 |
neural rod | 8.36e-10 | 56 |
future spinal cord | 8.36e-10 | 56 |
neural keel | 8.36e-10 | 56 |
hemolymphoid system | 8.51e-10 | 108 |
regional part of nervous system | 6.05e-09 | 53 |
regional part of brain | 6.05e-09 | 53 |
bone marrow | 5.07e-08 | 76 |
regional part of forebrain | 5.81e-08 | 41 |
forebrain | 5.81e-08 | 41 |
anterior neural tube | 5.81e-08 | 41 |
future forebrain | 5.81e-08 | 41 |
bone element | 1.67e-07 | 82 |
immune system | 3.50e-07 | 93 |