FFCP PHASE1:Hg19::chr17:39216636..39216653,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=not | |||
|UniProt=Q9BYR9 | |||
|association_with_transcript=-285bp_to_uc002hvx.2_5end | |||
|description=CAGE_peak_2_at_uc002hvx.2_5end | |||
|id=chr17:39216636..39216653,- | |||
|ontology_enrichment_celltype=CL:0000055!2.29e-26!180;CL:0000057!7.18e-22!75;CL:0002620!1.86e-19!23;CL:0000680!3.22e-12!57;CL:0000056!3.22e-12!57;CL:0000355!3.22e-12!57;CL:0000187!3.98e-10!54;CL:0000183!1.07e-09!59;CL:0000192!2.68e-09!42;CL:0000514!2.68e-09!42;CL:0002334!1.07e-08!12;CL:0000048!1.56e-08!430;CL:0000359!1.73e-08!32;CL:0000723!1.82e-08!436;CL:0002556!1.85e-08!6;CL:0000393!1.94e-08!60;CL:0000211!1.94e-08!60;CL:0000034!6.86e-08!444;CL:0002539!7.88e-08!10;CL:0002371!8.99e-08!591;CL:0000144!1.90e-07!625;CL:0000548!2.21e-07!679;CL:0000004!2.21e-07!679;CL:0000255!2.21e-07!679;CL:0000012!3.35e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002539;4.39e-18;10!CL:0000359;3.61e-10;32!CL:0000192;1.92e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,5.78e-18,10;CL:0000359,3.31e-10,32;CL:0000057,9.13e-08,76;CL:0000192,2.19e-07,43;CL:0000514,2.19e-07,43 | |||
|ontology_enrichment_development_v019=CL:0000514;1.92e-07;43!UBERON:0005795;6.07e-07;10 | |||
|ontology_enrichment_disease=DOID:17!4.10e-08!5;DOID:450!4.10e-08!5;DOID:66!4.10e-08!5;DOID:423!4.10e-08!5;DOID:0080000!4.10e-08!5;DOID:11722!4.10e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.11e-13;5!DOID:450;2.11e-13;5!DOID:66;2.11e-13;5!DOID:423;2.11e-13;5!DOID:0080000;2.11e-13;5!DOID:11722;2.11e-13;5!DOID:0060084;1.87e-10;3!DOID:127;1.87e-10;3!DOID:2513;6.99e-09;1!DOID:3112;1.83e-08;1!DOID:0060072;4.70e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.51e-13,5;DOID:450,1.51e-13,5;DOID:66,1.51e-13,5;DOID:423,1.51e-13,5;DOID:0080000,1.51e-13,5;DOID:11722,1.51e-13,5;DOID:0060084,1.79e-10,3;DOID:127,1.79e-10,3;DOID:2513,7.56e-09,1;DOID:3112,9.46e-09,1;DOID:0060072,4.54e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.34e-15!83;UBERON:0002329!1.34e-15!83;UBERON:0003077!1.34e-15!83;UBERON:0003059!1.34e-15!83;UBERON:0007282!1.34e-15!83;UBERON:0009618!1.34e-15!83;UBERON:0007285!1.34e-15!83;UBERON:0004290!2.07e-13!70;UBERON:0002199!3.76e-13!45;UBERON:0002416!3.76e-13!45;UBERON:0002097!1.41e-12!40;UBERON:0005256!3.39e-12!143;UBERON:0000486!1.06e-11!82;UBERON:0003102!1.17e-11!95;UBERON:0001134!6.74e-11!61;UBERON:0002036!6.74e-11!61;UBERON:0003082!6.74e-11!61;UBERON:0002385!2.63e-10!63;UBERON:0001015!2.63e-10!63;UBERON:0000383!2.63e-10!63;UBERON:0002100!7.75e-09!216;UBERON:0001758!1.85e-08!6;UBERON:0003672!1.85e-08!6;UBERON:0000475!4.80e-08!365;UBERON:0004237!7.88e-08!10;UBERON:0004695!7.88e-08!10;UBERON:0002111!7.88e-08!10;UBERON:0004178!7.88e-08!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;4.39e-18;10!UBERON:0004695;4.39e-18;10!UBERON:0002111;4.39e-18;10!UBERON:0004178;4.39e-18;10!UBERON:0000947;4.55e-12;21!UBERON:0010191;4.55e-12;21!UBERON:0001135;5.30e-12;15!UBERON:0004573;2.83e-10;33!UBERON:0004571;2.83e-10;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,5.78e-18,10;UBERON:0004695,5.78e-18,10;UBERON:0002111,5.78e-18,10;UBERON:0004178,5.78e-18,10;UBERON:0004573,6.65e-13,33;UBERON:0004571,6.65e-13,33;UBERON:0000947,5.30e-12,21;UBERON:0010191,5.30e-12,21;UBERON:0001135,6.34e-12,15;UBERON:0001637,6.70e-10,42;UBERON:0003509,6.70e-10,42;UBERON:0004572,6.70e-10,42;UBERON:0002199,7.30e-07,46;UBERON:0002416,7.30e-07,46;UBERON:0007500,9.95e-07,59;UBERON:0001981,9.95e-07,59;UBERON:0004537,9.95e-07,59;UBERON:0006965,9.95e-07,59 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0.602694528023977,0,1.46379839637152,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.25326102332916,2.64818361626438,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0.298897361103602,0.352303495931295,0.485618833104395,0,0,0.245668634623536,0,0,0,0,0,0.168336113954066,0.125118519871964,1.38532057742091,0.438977620880838,3.0648779579902,0.300476117813194,0,1.61450672119976,0.640672166455702,1.48352330811693,1.50045548042201,0.103052529238439,0.257640540045629,0.744467425326359,0.506328996723799,0.876933046450788,0.504867548488229,0.460249493211497,0,0.710019185033229,1.91428986632517,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0.343135620597051,0.109750285408626,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0.07333828582095,0.517086863031111,0,0,0,0,0.514414748524284,0,1.3321108950805,0,0,0,0,0,0,0,0,0,0,0,0,0.718874566474748,0,0,0.144781306667579,0.410952645100767,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.892144943985809,0.315404830067869,0.819989904948992,0,0,0,0,1.65932251687533,0.434418072340414,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.561320188866147,0.256278298511402,0,0.64341568457443,0,1.23367755042124,0.887808626565635,0.410635780069046,0,1.16210378459959,0,0.200506470303285,0,0.229628896329213,0.364182336013434,0.131124414959424,0,0,0.784349769176855,0,0.105551628892876,0,0,0.215915916102139,0,0.812839312631559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0.290033387828457,0.255679882248303,0.178064071293475,0,0,0,0,3.71876439437829,2.83331112147576,1.3940745403212,0,1.06461206063404,0.869932992075073,0.18532421910392,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0,0,0,1.05650146756755,0.9554993798559,0.282810863907425,0,0,0.66343897524122,1.75380354101505,0,0,0.608731130888112,0,0,0.143411352204052,0.196498082026242,0.35667105148125,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17727711363265,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0.173559738335131,0,0.0870592065804026,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950403028674658,0,0,0,0,0,1.62899880526114,0.864221491201268,1.30634944043764,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0.757612021100357,0.251567901752575,0.889811221596536,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0.265841714557995,0,0,0,0,0.909243296012797,0,0,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,1.61179956973339,0,0,1.06013487567529,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0.693153996902029,0,0,0,0,1.61364054962816,0,0,1.80149109261106,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0,1.8328549483524,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679708458751268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0.213454691755431,0,0,0,0,0,0,0,0 | |||
|short_description=p2@uc002hvx.2 | |||
}} |
Revision as of 15:15, 20 January 2014
Short description: | p2@uc002hvx.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc002hvx.2_5end |
Coexpression cluster: | NA |
Association with transcript: | -285bp_to_uc002hvx.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 5.78e-18 | 10 |
vascular associated smooth muscle cell | 3.31e-10 | 32 |
fibroblast | 9.13e-08 | 76 |
smooth muscle cell | 2.19e-07 | 43 |
smooth muscle myoblast | 2.19e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 5.78e-18 | 10 |
arterial system smooth muscle | 5.78e-18 | 10 |
artery smooth muscle tissue | 5.78e-18 | 10 |
aorta smooth muscle tissue | 5.78e-18 | 10 |
systemic artery | 6.65e-13 | 33 |
systemic arterial system | 6.65e-13 | 33 |
aorta | 5.30e-12 | 21 |
aortic system | 5.30e-12 | 21 |
smooth muscle tissue | 6.34e-12 | 15 |
artery | 6.70e-10 | 42 |
arterial blood vessel | 6.70e-10 | 42 |
arterial system | 6.70e-10 | 42 |
integument | 7.30e-07 | 46 |
integumental system | 7.30e-07 | 46 |
epithelial tube open at both ends | 9.95e-07 | 59 |
blood vessel | 9.95e-07 | 59 |
blood vasculature | 9.95e-07 | 59 |
vascular cord | 9.95e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.51e-13 | 5 |
myotonic disease | 1.51e-13 | 5 |
muscle tissue disease | 1.51e-13 | 5 |
myopathy | 1.51e-13 | 5 |
muscular disease | 1.51e-13 | 5 |
myotonic dystrophy | 1.51e-13 | 5 |
cell type benign neoplasm | 1.79e-10 | 3 |
leiomyoma | 1.79e-10 | 3 |
basal cell carcinoma | 7.56e-09 | 1 |
papillary adenocarcinoma | 9.46e-09 | 1 |
benign neoplasm | 4.54e-08 | 4 |