FFCP PHASE1:Hg19::chr19:13049413..13049432,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=811 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1455 | |||
|TSSclassifier=strong | |||
|UniProt=P27797,B4E2Y9 | |||
|association_with_transcript=0bp_to_ENST00000316448,ENST00000539083,NM_004343,uc002mvu.2_5end | |||
|coexpression_cluster_id=C2341 | |||
|description=CAGE_peak_1_at_CALR_5end | |||
|id=chr19:13049413..13049432,+ | |||
|ontology_enrichment_celltype=CL:0000144!4.25e-41!625;CL:0000012!3.73e-40!682;CL:0000548!9.83e-40!679;CL:0000004!9.83e-40!679;CL:0000255!9.83e-40!679;CL:0002371!8.55e-38!591;CL:0000055!1.33e-27!180;CL:0000003!1.06e-22!722;CL:0000222!6.85e-20!119;CL:0000220!2.74e-17!246;CL:0002321!6.00e-17!248;CL:0000183!1.26e-16!59;CL:0000048!4.89e-16!430;CL:0000723!7.91e-16!436;CL:0000034!2.17e-15!444;CL:0000192!2.24e-14!42;CL:0000514!2.24e-14!42;CL:0000680!2.38e-14!57;CL:0000056!2.38e-14!57;CL:0000355!2.38e-14!57;CL:0000187!5.16e-14!54;CL:0000063!1.48e-13!578;CL:0000057!2.05e-13!75;CL:0000393!3.87e-12!60;CL:0000211!3.87e-12!60;CL:0000359!8.51e-12!32;CL:0002320!4.28e-07!365;CL:0002078!6.81e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.62e-11;32!CL:0000192;6.71e-10;43!CL:0000134;6.49e-08;55!CL:0000187;8.15e-08;55!CL:0000048;4.28e-07;58!CL:1000449;6.97e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,6.65e-20,121;CL:0002321,4.63e-17,250;CL:0000048,6.46e-16,427;CL:0000723,1.05e-15,433;CL:0000034,2.88e-15,441;CL:0000680,8.03e-14,58;CL:0000056,8.03e-14,58;CL:0000355,8.03e-14,58;CL:0000192,1.01e-13,43;CL:0000514,1.01e-13,43;CL:0000057,1.24e-13,76;CL:0000187,1.78e-13,55;CL:0000359,8.51e-12,32;CL:0000393,1.09e-11,61;CL:0000211,1.09e-11,61;CL:0002078,2.93e-07,45;CL:0002320,3.83e-07,361;CL:1000449,6.97e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;6.71e-10;43!CL:0000355;2.56e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.75e-17!118;UBERON:0005256!3.21e-17!143;UBERON:0002049!1.07e-16!79;UBERON:0007798!1.07e-16!79;UBERON:0000055!2.28e-14!69;UBERON:0000486!2.88e-14!82;UBERON:0000490!8.90e-14!138;UBERON:0001637!9.83e-14!42;UBERON:0003509!9.83e-14!42;UBERON:0004572!9.83e-14!42;UBERON:0000914!1.24e-13!83;UBERON:0002329!1.24e-13!83;UBERON:0003077!1.24e-13!83;UBERON:0003059!1.24e-13!83;UBERON:0007282!1.24e-13!83;UBERON:0009618!1.24e-13!83;UBERON:0007285!1.24e-13!83;UBERON:0001981!6.25e-13!60;UBERON:0007500!6.25e-13!60;UBERON:0004537!6.25e-13!60;UBERON:0006965!6.25e-13!60;UBERON:0004872!7.61e-13!84;UBERON:0004290!9.16e-13!70;UBERON:0001134!1.68e-11!61;UBERON:0002036!1.68e-11!61;UBERON:0003082!1.68e-11!61;UBERON:0004573!2.24e-11!33;UBERON:0004571!2.24e-11!33;UBERON:0004535!1.39e-10!110;UBERON:0002385!2.25e-10!63;UBERON:0001015!2.25e-10!63;UBERON:0000383!2.25e-10!63;UBERON:0001009!4.35e-10!113;UBERON:0002100!8.64e-10!216;UBERON:0002384!3.70e-07!375;UBERON:0000926!9.17e-07!448;UBERON:0004120!9.17e-07!448;UBERON:0006603!9.17e-07!448;UBERON:0000947!9.52e-07!21;UBERON:0010191!9.52e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.81e-10;33!UBERON:0004571;1.81e-10;33!UBERON:0001637;2.00e-10;42!UBERON:0003509;2.00e-10;42!UBERON:0004572;2.00e-10;42!UBERON:0003914;1.87e-08;74!UBERON:0007500;2.86e-08;56!UBERON:0001981;2.86e-08;56!UBERON:0004537;2.86e-08;56!UBERON:0000055;9.12e-08;65!UBERON:0002049;2.87e-07;75!UBERON:0007798;2.87e-07;75!UBERON:0000353;2.96e-07;15!UBERON:0006555;6.97e-07;15!UBERON:0004819;6.97e-07;15!UBERON:0001285;6.97e-07;15!UBERON:0007684;6.97e-07;15!UBERON:0000947;9.50e-07;21!UBERON:0010191;9.50e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,7.20e-18,117;UBERON:0002049,1.80e-16,78;UBERON:0007798,1.80e-16,78;UBERON:0007503,3.82e-15,78;UBERON:0000490,7.44e-15,148;UBERON:0000055,3.80e-14,68;UBERON:0005256,7.31e-14,122;UBERON:0000486,7.43e-14,83;UBERON:0003104,8.37e-14,160;UBERON:0009142,8.37e-14,160;UBERON:0001637,9.83e-14,42;UBERON:0003509,9.83e-14,42;UBERON:0004572,9.83e-14,42;UBERON:0007500,1.03e-12,59;UBERON:0001981,1.03e-12,59;UBERON:0004537,1.03e-12,59;UBERON:0006965,1.03e-12,59;UBERON:0004872,1.25e-12,83;UBERON:0002329,2.41e-12,71;UBERON:0003059,2.41e-12,71;UBERON:0007282,2.41e-12,71;UBERON:0004290,2.41e-12,71;UBERON:0009618,2.41e-12,71;UBERON:0007524,7.23e-12,73;UBERON:0003077,1.09e-11,72;UBERON:0007285,1.09e-11,72;UBERON:0004573,2.24e-11,33;UBERON:0004571,2.24e-11,33;UBERON:0001134,4.46e-11,62;UBERON:0002036,4.46e-11,62;UBERON:0003082,4.46e-11,62;UBERON:0004535,2.18e-10,109;UBERON:0002385,5.45e-10,64;UBERON:0001015,5.45e-10,64;UBERON:0000383,5.45e-10,64;UBERON:0001009,6.77e-10,112;UBERON:0002100,1.50e-09,199;UBERON:0000926,1.11e-07,315;UBERON:0004120,1.11e-07,315;UBERON:0006603,1.11e-07,315;UBERON:0000353,2.96e-07,15;UBERON:0002384,3.33e-07,371;UBERON:0004211,6.97e-07,15;UBERON:0009773,6.97e-07,15;UBERON:0001231,6.97e-07,15;UBERON:0001285,6.97e-07,15;UBERON:0007684,6.97e-07,15;UBERON:0004208,6.97e-07,15;UBERON:0000947,9.52e-07,21;UBERON:0010191,9.52e-07,21 | |||
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| |||
|short_description=p1@CALR | |||
}} |
Revision as of 21:33, 20 January 2014
Short description: | p1@CALR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CALR_5end |
Coexpression cluster: | C2341_Smooth_Fibroblast_mesenchymal_Hepatic_Adipocyte_Pericytes_Preadipocyte |
Association with transcript: | 0bp_to_ENST00000316448, ENST00000539083, NM_004343, uc002mvu.2_5end |
EntrezGene: | CALR |
HGNC: | 1455 |
UniProt: | P27797B4E2Y9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 6.65e-20 | 121 |
embryonic cell | 4.63e-17 | 250 |
multi fate stem cell | 6.46e-16 | 427 |
somatic stem cell | 1.05e-15 | 433 |
stem cell | 2.88e-15 | 441 |
muscle precursor cell | 8.03e-14 | 58 |
myoblast | 8.03e-14 | 58 |
multi-potent skeletal muscle stem cell | 8.03e-14 | 58 |
smooth muscle cell | 1.01e-13 | 43 |
smooth muscle myoblast | 1.01e-13 | 43 |
fibroblast | 1.24e-13 | 76 |
muscle cell | 1.78e-13 | 55 |
vascular associated smooth muscle cell | 8.51e-12 | 32 |
electrically responsive cell | 1.09e-11 | 61 |
electrically active cell | 1.09e-11 | 61 |
meso-epithelial cell | 2.93e-07 | 45 |
connective tissue cell | 3.83e-07 | 361 |
epithelial cell of nephron | 6.97e-07 | 15 |