FFCP PHASE1:Mm9::chr11:6460229..6460243,+: Difference between revisions
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{{FFCP|EntrezGene=216527|HGNC=|MCL_coexpression_id=40|UniProt=F8WJD3|association_with_transcript=43bp_to_ENSMUST00000109722,NM_001190344,uc007hyw.2_5end|description=CAGE_peak_6_at_Ccm2_5end|id=chr11:6460229..6460243,+|ontology_enrichment_celltype=CL:0002031!9.66e-18!25;CL:0000838!3.43e-15!12;CL:0000542!7.14e-14!13;CL:0000051!7.14e-14!13;CL:0000084!2.35e-13!11;CL:0000827!2.35e-13!11;CL:0000791!3.09e-13!9;CL:0000789!3.09e-13!9;CL:0002420!3.09e-13!9;CL:0002419!3.09e-13!9;CL:0000790!3.09e-13!9;CL:0000988!4.79e-13!32;CL:0002032!4.79e-13!32;CL:0000037!4.79e-13!32;CL:0000566!4.79e-13!32;CL:0000837!4.79e-13!32;CL:0000738!1.62e-12!17;CL:0002087!1.62e-12!17;CL:0000624!4.44e-11!8;CL:0000553!8.78e-09!6;CL:0000556!8.78e-09!6;CL:0002320!5.47e-08!46;CL:0000134!5.47e-08!46;CL:0000893!4.77e-07!6;CL:0002489!4.77e-07!6;CL:0000898!4.77e-07!6;CL:0000809!4.77e-07!6;CL:0000810!4.77e-07!6;CL:0000895!4.77e-07!6;CL:0000808!4.77e-07!6;CL:0000894!4.77e-07!6;CL:0000806!4.77e-07!6;CL:0000807!4.77e-07!6;CL:0000805!4.77e-07!6;CL:0002425!4.77e-07!6;CL:0002436!4.77e-07!6;CL:0002427!4.77e-07!6;CL:0002428!4.77e-07!6;CL:0002429!4.77e-07!6;CL:0002433!4.77e-07!6;CL:0002431!4.77e-07!6;CL:0002432!4.77e-07!6|ontology_enrichment_celltype_v019_2=CL:0000791,6.32e-53,9;CL:0000789,6.32e-53,9;CL:0002420,6.32e-53,9;CL:0002419,6.32e-53,9;CL:0000790,6.32e-53,9;CL:0000624,1.00e-43,8;CL:0000084,2.47e-43,11;CL:0000827,2.47e-43,11;CL:0000838,9.83e-40,12;CL:0000542,1.10e-36,13;CL:0000051,1.10e-36,13;CL:0000738,4.50e-28,17;CL:0002087,4.50e-28,17;CL:0000893,1.46e-26,6;CL:0002489,1.46e-26,6;CL:0000898,1.46e-26,6;CL:0000809,1.46e-26,6;CL:0000810,1.46e-26,6;CL:0000895,1.46e-26,6;CL:0000808,1.46e-26,6;CL:0000894,1.46e-26,6;CL:0000806,1.46e-26,6;CL:0000807,1.46e-26,6;CL:0000805,1.46e-26,6;CL:0002425,1.46e-26,6;CL:0002436,1.46e-26,6;CL:0002427,1.46e-26,6;CL:0002428,1.46e-26,6;CL:0002429,1.46e-26,6;CL:0002433,1.46e-26,6;CL:0002431,1.46e-26,6;CL:0002432,1.46e-26,6;CL:0002031,4.33e-19,25;CL:0000988,6.74e-15,32;CL:0002032,6.74e-15,32;CL:0000037,6.74e-15,32;CL:0000837,6.74e-15,32;CL:0000625,2.31e-11,1;CL:0000815,4.58e-11,1;CL:0000792,4.58e-11,1;CL:0002320,2.56e-10,46;CL:0000134,2.56e-10,46;CL:0000219,9.32e-09,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.13e-23!48;UBERON:0002390!1.65e-23!45;UBERON:0003061!1.65e-23!45;UBERON:0002370!2.34e-22!23;UBERON:0000974!2.34e-22!23;UBERON:0004807!2.34e-22!23;UBERON:0005058!2.34e-22!23;UBERON:0003351!2.34e-22!23;UBERON:0009113!2.34e-22!23;UBERON:0003295!2.34e-22!23;UBERON:0009722!2.34e-22!23;UBERON:0005562!2.34e-22!23;UBERON:0007690!2.34e-22!23;UBERON:0004177!1.32e-21!29;UBERON:0006562!2.95e-21!24;UBERON:0003408!2.95e-21!24;UBERON:0001557!2.95e-21!24;UBERON:0001042!2.95e-21!24;UBERON:0008814!2.95e-21!24;UBERON:0009145!2.95e-21!24;UBERON:0000072!1.92e-18!27;UBERON:0000065!1.61e-17!41;UBERON:0001004!5.53e-17!42;UBERON:0002405!1.28e-15!70;UBERON:0000063!2.58e-13!35;UBERON:0005057!1.26e-11!51;UBERON:0003081!3.98e-11!88;UBERON:0005911!1.97e-09!69;UBERON:0001041!2.82e-08!92;UBERON:0003929!4.36e-08!55;UBERON:0002384!5.47e-08!46;UBERON:0000077!1.45e-07!97;UBERON:0002530!3.74e-07!65;UBERON:0002368!4.35e-07!60;UBERON:0000490!6.33e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.18e-15,23;UBERON:0000974,3.18e-15,23;UBERON:0004807,3.18e-15,23;UBERON:0005058,3.18e-15,23;UBERON:0003351,3.18e-15,23;UBERON:0009113,3.18e-15,23;UBERON:0003295,3.18e-15,23;UBERON:0009722,3.18e-15,23;UBERON:0005562,3.18e-15,23;UBERON:0007690,3.18e-15,23;UBERON:0006562,1.36e-14,24;UBERON:0003408,1.36e-14,24;UBERON:0001557,1.36e-14,24;UBERON:0001042,1.36e-14,24;UBERON:0008814,1.36e-14,24;UBERON:0009145,1.36e-14,24;UBERON:0000072,5.67e-13,27;UBERON:0004177,4.45e-12,29;UBERON:0005057,4.45e-12,29;UBERON:0002384,2.56e-10,46;UBERON:0000077,5.31e-10,35;UBERON:0007811,1.01e-09,36;UBERON:0000065,1.58e-08,41;UBERON:0001004,2.54e-08,42;UBERON:0000153,3.99e-08,43;UBERON:0002390,9.26e-08,45;UBERON:0003061,9.26e-08,45;UBERON:0002193,2.88e-07,48;UBERON:0002405,2.88e-07,48|phase1_expression=0,0,0,0,0,0,0,2.7115897922731,1.267098499365,3.27690336850791,0,0,5.30722262786738,7.51815460803378,0.333109761815663,0.202475267389826,0,0.630924330716475,0.274228867211478,0.42438965179803,0,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0.503347818173209,1.45072428402269,7.05796978199174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0,0.44292937929755,0.159454768657487,0,0.172684981865896,0,0,0.54390568381871,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0.136694227721025,0.686334519619568,0,0.419854356970974,0.276399947608848,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0,0.205421914329655,0.25984164595559,0.179026695667481,0,0.721172697119813,0.886137163047463,0.302899349844443,0.762068066549998,0.403304740547362,0.682205165178267,0.384847366561318,2.33753804363138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p6@Ccm2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:216527 | |||
|HGNC= | |||
|MCL_coexpression_id=40 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F8WJD3 | |||
|association_with_transcript=43bp_to_ENSMUST00000109722,NM_001190344,uc007hyw.2_5end | |||
|cluster_id=chr11:6460229..6460243,+ | |||
|description=CAGE_peak_6_at_Ccm2_5end | |||
|id=chr11:6460229..6460243,+ | |||
|ontology_enrichment_celltype=CL:0002031!9.66e-18!25;CL:0000838!3.43e-15!12;CL:0000542!7.14e-14!13;CL:0000051!7.14e-14!13;CL:0000084!2.35e-13!11;CL:0000827!2.35e-13!11;CL:0000791!3.09e-13!9;CL:0000789!3.09e-13!9;CL:0002420!3.09e-13!9;CL:0002419!3.09e-13!9;CL:0000790!3.09e-13!9;CL:0000988!4.79e-13!32;CL:0002032!4.79e-13!32;CL:0000037!4.79e-13!32;CL:0000566!4.79e-13!32;CL:0000837!4.79e-13!32;CL:0000738!1.62e-12!17;CL:0002087!1.62e-12!17;CL:0000624!4.44e-11!8;CL:0000553!8.78e-09!6;CL:0000556!8.78e-09!6;CL:0002320!5.47e-08!46;CL:0000134!5.47e-08!46;CL:0000893!4.77e-07!6;CL:0002489!4.77e-07!6;CL:0000898!4.77e-07!6;CL:0000809!4.77e-07!6;CL:0000810!4.77e-07!6;CL:0000895!4.77e-07!6;CL:0000808!4.77e-07!6;CL:0000894!4.77e-07!6;CL:0000806!4.77e-07!6;CL:0000807!4.77e-07!6;CL:0000805!4.77e-07!6;CL:0002425!4.77e-07!6;CL:0002436!4.77e-07!6;CL:0002427!4.77e-07!6;CL:0002428!4.77e-07!6;CL:0002429!4.77e-07!6;CL:0002433!4.77e-07!6;CL:0002431!4.77e-07!6;CL:0002432!4.77e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.32e-53,9;CL:0000789,6.32e-53,9;CL:0002420,6.32e-53,9;CL:0002419,6.32e-53,9;CL:0000790,6.32e-53,9;CL:0000624,1.00e-43,8;CL:0000084,2.47e-43,11;CL:0000827,2.47e-43,11;CL:0000838,9.83e-40,12;CL:0000542,1.10e-36,13;CL:0000051,1.10e-36,13;CL:0000738,4.50e-28,17;CL:0002087,4.50e-28,17;CL:0000893,1.46e-26,6;CL:0002489,1.46e-26,6;CL:0000898,1.46e-26,6;CL:0000809,1.46e-26,6;CL:0000810,1.46e-26,6;CL:0000895,1.46e-26,6;CL:0000808,1.46e-26,6;CL:0000894,1.46e-26,6;CL:0000806,1.46e-26,6;CL:0000807,1.46e-26,6;CL:0000805,1.46e-26,6;CL:0002425,1.46e-26,6;CL:0002436,1.46e-26,6;CL:0002427,1.46e-26,6;CL:0002428,1.46e-26,6;CL:0002429,1.46e-26,6;CL:0002433,1.46e-26,6;CL:0002431,1.46e-26,6;CL:0002432,1.46e-26,6;CL:0002031,4.33e-19,25;CL:0000988,6.74e-15,32;CL:0002032,6.74e-15,32;CL:0000037,6.74e-15,32;CL:0000837,6.74e-15,32;CL:0000625,2.31e-11,1;CL:0000815,4.58e-11,1;CL:0000792,4.58e-11,1;CL:0002320,2.56e-10,46;CL:0000134,2.56e-10,46;CL:0000219,9.32e-09,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.13e-23!48;UBERON:0002390!1.65e-23!45;UBERON:0003061!1.65e-23!45;UBERON:0002370!2.34e-22!23;UBERON:0000974!2.34e-22!23;UBERON:0004807!2.34e-22!23;UBERON:0005058!2.34e-22!23;UBERON:0003351!2.34e-22!23;UBERON:0009113!2.34e-22!23;UBERON:0003295!2.34e-22!23;UBERON:0009722!2.34e-22!23;UBERON:0005562!2.34e-22!23;UBERON:0007690!2.34e-22!23;UBERON:0004177!1.32e-21!29;UBERON:0006562!2.95e-21!24;UBERON:0003408!2.95e-21!24;UBERON:0001557!2.95e-21!24;UBERON:0001042!2.95e-21!24;UBERON:0008814!2.95e-21!24;UBERON:0009145!2.95e-21!24;UBERON:0000072!1.92e-18!27;UBERON:0000065!1.61e-17!41;UBERON:0001004!5.53e-17!42;UBERON:0002405!1.28e-15!70;UBERON:0000063!2.58e-13!35;UBERON:0005057!1.26e-11!51;UBERON:0003081!3.98e-11!88;UBERON:0005911!1.97e-09!69;UBERON:0001041!2.82e-08!92;UBERON:0003929!4.36e-08!55;UBERON:0002384!5.47e-08!46;UBERON:0000077!1.45e-07!97;UBERON:0002530!3.74e-07!65;UBERON:0002368!4.35e-07!60;UBERON:0000490!6.33e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.18e-15,23;UBERON:0000974,3.18e-15,23;UBERON:0004807,3.18e-15,23;UBERON:0005058,3.18e-15,23;UBERON:0003351,3.18e-15,23;UBERON:0009113,3.18e-15,23;UBERON:0003295,3.18e-15,23;UBERON:0009722,3.18e-15,23;UBERON:0005562,3.18e-15,23;UBERON:0007690,3.18e-15,23;UBERON:0006562,1.36e-14,24;UBERON:0003408,1.36e-14,24;UBERON:0001557,1.36e-14,24;UBERON:0001042,1.36e-14,24;UBERON:0008814,1.36e-14,24;UBERON:0009145,1.36e-14,24;UBERON:0000072,5.67e-13,27;UBERON:0004177,4.45e-12,29;UBERON:0005057,4.45e-12,29;UBERON:0002384,2.56e-10,46;UBERON:0000077,5.31e-10,35;UBERON:0007811,1.01e-09,36;UBERON:0000065,1.58e-08,41;UBERON:0001004,2.54e-08,42;UBERON:0000153,3.99e-08,43;UBERON:0002390,9.26e-08,45;UBERON:0003061,9.26e-08,45;UBERON:0002193,2.88e-07,48;UBERON:0002405,2.88e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,2.7115897922731,1.267098499365,3.27690336850791,0,0,5.30722262786738,7.51815460803378,0.333109761815663,0.202475267389826,0,0.630924330716475,0.274228867211478,0.42438965179803,0,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0.503347818173209,1.45072428402269,7.05796978199174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0,0.44292937929755,0.159454768657487,0,0.172684981865896,0,0,0.54390568381871,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0.136694227721025,0.686334519619568,0,0.419854356970974,0.276399947608848,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0,0.205421914329655,0.25984164595559,0.179026695667481,0,0.721172697119813,0.886137163047463,0.302899349844443,0.762068066549998,0.403304740547362,0.682205165178267,0.384847366561318,2.33753804363138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@Ccm2 | |||
}} |
Revision as of 07:31, 6 August 2015
Short description: | p6@Ccm2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Ccm2_5end |
Coexpression cluster: | MCL_coexpression_mm9:40 |
Association with transcript: | 43bp_to_ENSMUST00000109722, NM_001190344, uc007hyw.2_5end |
EntrezGene: | 216527 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 3.18e-15 | 23 |
neck | 3.18e-15 | 23 |
respiratory system epithelium | 3.18e-15 | 23 |
hemolymphoid system gland | 3.18e-15 | 23 |
pharyngeal epithelium | 3.18e-15 | 23 |
thymic region | 3.18e-15 | 23 |
pharyngeal gland | 3.18e-15 | 23 |
entire pharyngeal arch endoderm | 3.18e-15 | 23 |
thymus primordium | 3.18e-15 | 23 |
early pharyngeal endoderm | 3.18e-15 | 23 |
pharynx | 1.36e-14 | 24 |
gland of gut | 1.36e-14 | 24 |
upper respiratory tract | 1.36e-14 | 24 |
chordate pharynx | 1.36e-14 | 24 |
pharyngeal arch system | 1.36e-14 | 24 |
pharyngeal region of foregut | 1.36e-14 | 24 |
segment of respiratory tract | 5.67e-13 | 27 |
hemopoietic organ | 4.45e-12 | 29 |
immune organ | 4.45e-12 | 29 |
connective tissue | 2.56e-10 | 46 |
mixed endoderm/mesoderm-derived structure | 5.31e-10 | 35 |
craniocervical region | 1.01e-09 | 36 |
respiratory tract | 1.58e-08 | 41 |
respiratory system | 2.54e-08 | 42 |
anterior region of body | 3.99e-08 | 43 |
hematopoietic system | 9.26e-08 | 45 |
blood island | 9.26e-08 | 45 |
hemolymphoid system | 2.88e-07 | 48 |
immune system | 2.88e-07 | 48 |