FFCP PHASE1:Hg19::chr6:32609190..32609204,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3117 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4942 | |||
|TSSclassifier=strong | |||
|UniProt=P01909 | |||
|association_with_transcript=104bp_to_L34086,L42625_5end | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_18_at_HLA-DQA1_5end | |||
|id=chr6:32609190..32609204,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.53e-45!140;CL:0002031!4.07e-38!124;CL:0002087!9.47e-38!119;CL:0000037!7.68e-35!172;CL:0000566!7.68e-35!172;CL:0000988!6.09e-34!182;CL:0002032!4.31e-33!165;CL:0000837!4.31e-33!165;CL:0002009!1.84e-28!65;CL:0000557!1.63e-25!71;CL:0000451!3.60e-25!10;CL:0000990!6.63e-25!8;CL:0002194!1.75e-24!63;CL:0000576!1.75e-24!63;CL:0000040!1.75e-24!63;CL:0000559!1.75e-24!63;CL:0000839!1.90e-21!70;CL:0000766!3.93e-21!76;CL:0000763!8.22e-20!112;CL:0000049!8.22e-20!112;CL:0002057!3.79e-19!42;CL:0000453!6.97e-19!5;CL:0000860!1.38e-17!45;CL:0000945!5.41e-15!24;CL:0000826!5.41e-15!24;CL:0000840!7.46e-15!5;CL:0001029!7.46e-15!5;CL:0000838!1.12e-12!52;CL:0000542!2.29e-12!53;CL:0000051!2.29e-12!53;CL:0000134!5.83e-11!358;CL:0002320!1.54e-10!365;CL:0000219!4.62e-09!390;CL:0001014!1.52e-08!2;CL:0001016!1.52e-08!2;CL:0000236!2.11e-08!14;CL:0000048!2.63e-07!430;CL:0000723!4.65e-07!436;CL:0000034!9.69e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000453;6.29e-77;5!CL:0000990;6.95e-43;8!CL:0000451;3.92e-35;10!CL:0001014;1.17e-31;2!CL:0001016;1.17e-31;2!CL:0000840;3.06e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,4.62e-77,5;CL:0000990,5.86e-43,8;CL:0000451,3.41e-35,10;CL:0001014,8.57e-32,2;CL:0001016,8.57e-32,2;CL:0000738,5.43e-15,136;CL:0000763,3.73e-13,108;CL:0000049,3.73e-13,108;CL:0002032,1.65e-12,161;CL:0000837,1.65e-12,161;CL:0000037,6.07e-12,168;CL:0002009,1.31e-11,61;CL:0000840,2.76e-11,5;CL:0001029,2.76e-11,5;CL:0000988,2.79e-11,177;CL:0000557,1.52e-10,67;CL:0002031,2.29e-09,120;CL:0000473,6.42e-08,48;CL:0000234,6.42e-08,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.65e-16;1!DOID:0060061;1.65e-16;1!DOID:8691;1.65e-16;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.25e-16,1;DOID:0060061,2.25e-16,1;DOID:8691,2.25e-16,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.06e-25!102;UBERON:0003061!2.06e-25!102;UBERON:0002193!4.77e-24!112;UBERON:0002371!6.46e-22!80;UBERON:0002405!5.77e-20!115;UBERON:0001474!6.17e-20!86;UBERON:0004765!5.10e-16!101;UBERON:0001434!5.10e-16!101;UBERON:0002384!5.75e-10!375;UBERON:0003081!1.73e-09!216;UBERON:0002204!2.87e-07!167;UBERON:0004177!3.58e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;1.65e-16;1!UBERON:0006518;1.65e-16;1!UBERON:0008949;1.65e-16;1!UBERON:0000101;1.65e-16;1!UBERON:0002167;1.65e-16;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,1.04e-16,1;UBERON:0006518,1.04e-16,1;UBERON:0008949,1.04e-16,1;UBERON:0000101,1.04e-16,1;UBERON:0002167,1.04e-16,1;UBERON:0002371,2.96e-09,76;UBERON:0001474,1.50e-08,82;UBERON:0004765,9.39e-08,90;UBERON:0002405,1.72e-07,93;UBERON:0002390,4.38e-07,98;UBERON:0003061,4.38e-07,98;UBERON:0001434,6.20e-07,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.328402357799783,0.314843125254717,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0.77272670290256,0,0,0,0,0.822335776043652,0.309706370895104,0,0,0.709446689665756,0,0,0,0,0.272906150057846,0.449446968890169,0,0,1.27867425159808,0,0.398927315243264,1.27867425159808,0,0,1.86846674698672,0,0,0.217188844705117,0,0.368277635987565,0.949387162322653,0,1.06302149982522,0.419317291016752,0,0,0.16072558669708,0,0.19891667719909,0.182664153764634,0,0.546138611262131,0,0.426730222566507,0.800791974072025,0,0.661044872784862,0,0,0.587237189370939,1.14681968437569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0.870648686496336,0,0.715471872916026,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.862856803274467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.525774708558629,0.558564802544508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37460837327251,1.5476039091159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,1.65695622138878,0,0,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8864788392027,2.65729680626726,2.12635012532597,0,0,0,1.19992437512958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281951753939561,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | |||
|short_description=p18@HLA-DQA1 | |||
}} |
Revision as of 11:16, 22 January 2014
Short description: | p18@HLA-DQA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_HLA-DQA1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | 104bp_to_L34086, L42625_5end |
EntrezGene: | HLA-DQA1 |
HGNC: | 4942 |
UniProt: | P01909 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 4.62e-77 | 5 |
conventional dendritic cell | 5.86e-43 | 8 |
dendritic cell | 3.41e-35 | 10 |
CD1a-positive Langerhans cell | 8.57e-32 | 2 |
immature CD1a-positive Langerhans cell | 8.57e-32 | 2 |
leukocyte | 5.43e-15 | 136 |
myeloid cell | 3.73e-13 | 108 |
common myeloid progenitor | 3.73e-13 | 108 |
hematopoietic oligopotent progenitor cell | 1.65e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.65e-12 | 161 |
hematopoietic stem cell | 6.07e-12 | 168 |
macrophage dendritic cell progenitor | 1.31e-11 | 61 |
immature conventional dendritic cell | 2.76e-11 | 5 |
common dendritic progenitor | 2.76e-11 | 5 |
hematopoietic cell | 2.79e-11 | 177 |
granulocyte monocyte progenitor cell | 1.52e-10 | 67 |
hematopoietic lineage restricted progenitor cell | 2.29e-09 | 120 |
defensive cell | 6.42e-08 | 48 |
phagocyte | 6.42e-08 | 48 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 1.04e-16 | 1 |
right lung lobe | 1.04e-16 | 1 |
lower lobe of lung | 1.04e-16 | 1 |
lobe of lung | 1.04e-16 | 1 |
right lung | 1.04e-16 | 1 |
bone marrow | 2.96e-09 | 76 |
bone element | 1.50e-08 | 82 |
skeletal element | 9.39e-08 | 90 |
immune system | 1.72e-07 | 93 |
hematopoietic system | 4.38e-07 | 98 |
blood island | 4.38e-07 | 98 |
skeletal system | 6.20e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.25e-16 | 1 |
cutaneous T cell lymphoma | 2.25e-16 | 1 |
mycosis fungoides | 2.25e-16 | 1 |