FFCP PHASE2:Hg19::chr6:31760589..31760623,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:7407 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:12651 |TSSclas...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=7407 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=12651 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= |
Latest revision as of 23:56, 17 September 2015
Short description: | p9@VARS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VARS_5end |
Coexpression cluster: | NA |
Association with transcript: | 113bp_to_ENST00000495010_5end |
EntrezGene: | VARS |
HGNC: | 12651 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p9@VARS |
---|
0
1
2
3
4
5
6
7
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.25e-18 | 253 |
epithelial cell of nephron | 9.99e-12 | 15 |
kidney tubule cell | 1.24e-10 | 10 |
nephron tubule epithelial cell | 1.24e-10 | 10 |
kidney cell | 3.60e-10 | 17 |
kidney epithelial cell | 3.60e-10 | 17 |
kidney cortical cell | 1.67e-08 | 12 |
renal cortical epithelial cell | 1.67e-08 | 12 |
squamous epithelial cell | 1.15e-07 | 63 |
Showing 1 to 9 of 9 entries
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 9.99e-12 | 15 |
renal tubule | 9.99e-12 | 15 |
nephron tubule | 9.99e-12 | 15 |
nephron | 9.99e-12 | 15 |
uriniferous tubule | 9.99e-12 | 15 |
nephrogenic mesenchyme | 9.99e-12 | 15 |
excretory tube | 6.71e-11 | 16 |
kidney epithelium | 6.71e-11 | 16 |
nephron tubule epithelium | 1.24e-10 | 10 |
urinary system structure | 1.81e-10 | 47 |
Showing 1 to 10 of 20 entries
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.50e-15 | 14 |
carcinoma | 8.84e-12 | 106 |
cell type cancer | 2.75e-11 | 143 |
signet ring cell adenocarcinoma | 3.19e-07 | 2 |
Showing 1 to 4 of 4 entries