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Revision as of 17:09, 15 June 2012

Name:extraembryonic structure
Definition:"Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH]
Xrefs:
links:

AAO:0010020
AEO:0000042
BILA:0000042
CARO:0000042
EHDAA:46
EHDAA2:0003042
EMAPA:16042
FBbt:00005835
FMA:85537
HAO:0000042
ncithesaurus:Extraembryonic_Structure
SCTID:314908006
TAO:0000020
TGMA:0001843
VHOG:0000292
XAO:0004005

ZFA:0000020
Synonyms: "extra-embryonic structure" EXACT []
"extraembryonic component" RELATED []
"extraembryonic tissue" RELATED []
Comments:see also conceptus extraembryonic component in EHDAA2
Alt_id: UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000061(anatomical structure)
disjoint_from:UBERON:0002050(embryonic structure)



Children

is a:UBERON:0000920 (egg chorion),UBERON:0001987 (placenta),UBERON:0002331 (umbilical cord),UBERON:0005292 (extraembryonic tissue),UBERON:0005631 (extraembryonic membrane),UBERON:0005971 (amniotic fold),UBERON:0007806 (connecting stalk)
part of:FF:0000218 (chicken embryo extraembryonic tissue day7 HH32),FF:0000219 (chicken embryo extraembryonic tissue day15 HH41),CL:0000349 (extraembryonic cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000478 (extraembryonic structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.4e-90FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_4c4a71465ec68016fe7a84c055fff15fp1@ENST00000469806
4.4e-90FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_4c4a71465ec68016fe7a84c055fff15fp1@ENST00000469806
1.78e-89FFCP PHASE1:Hg19::chr20:61287795..61287809,+#_54aa8bf4ff2c928af23fca873bdb2622p4@SLCO4A1
1.78e-89FFCP PHASE2:Hg19::chr20:61287795..61287809,+#_54aa8bf4ff2c928af23fca873bdb2622p4@SLCO4A1
1.58e-86FFCP PHASE1:Mm9::chr14:102036767..102036774,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:102036767..102036774, -
1.58e-86FFCP PHASE2:Mm9::chr13:61040767..61040776,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61040767..61040776, -
1.58e-86FFCP PHASE2:Mm9::chr7:17788797..17788806,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Psg29
1.58e-86FFCP PHASE2:Mm9::chr13:27335609..27335622,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27335609..27335622, +
1.58e-86FFCP PHASE2:Mm9::chr1:193090931..193090940,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:193090931..193090940, +
1.58e-86FFCP PHASE1:Mm9::chr6:48879890..48879896,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@1600015I10Rik
1.58e-86FFCP PHASE1:Mm9::chr6:97907033..97907043,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:97907033..97907043, +
1.58e-86FFCP PHASE2:Mm9::chr14:26461997..26462039,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:26461997..26462039, +
1.58e-86FFCP PHASE1:Mm9::chr13:27335609..27335622,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27335609..27335622, +
1.58e-86FFCP PHASE2:Mm9::chr11:55223511..55223524,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr11:55223511..55223524, -
1.58e-86FFCP PHASE2:Mm9::chr7:17798686..17798694,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr7:17798686..17798694, +
1.58e-86FFCP PHASE2:Mm9::chr13:27337674..27337690,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27337674..27337690, +
1.58e-86FFCP PHASE2:Mm9::chr13:27288509..27288515,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@Prl3c1
1.58e-86FFCP PHASE1:Mm9::chr7:17749305..17749310,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr7:17749305..17749310, +
1.58e-86FFCP PHASE2:Mm9::chr6:97907033..97907043,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:97907033..97907043, +
1.58e-86FFCP PHASE2:Mm9::chrX:136335482..136335502,+#_91d2790787b49f99f30f6e59cf5f4cc1p3@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr13:61105387..61105403,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61105387..61105403, +
1.58e-86FFCP PHASE1:Mm9::chr13:33048652..33048685,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:33048652..33048685, +
1.58e-86FFCP PHASE1:Mm9::chr13:27288509..27288515,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@Prl3c1
1.58e-86FFCP PHASE2:Mm9::chr13:27339701..27339760,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27339701..27339760, +
1.58e-86FFCP PHASE1:Mm9::chr7:17798686..17798694,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr7:17798686..17798694, +
1.58e-86FFCP PHASE2:Mm9::chr15:78342035..78342046,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr15:78342035..78342046, -
1.58e-86FFCP PHASE1:Mm9::chr5:125523411..125523420,-#_91d2790787b49f99f30f6e59cf5f4cc1p24@Ncor2
1.58e-86FFCP PHASE1:Mm9::chrX:136335482..136335502,+#_91d2790787b49f99f30f6e59cf5f4cc1p3@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr5:114862554..114862564,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:114862554..114862564, +
1.58e-86FFCP PHASE1:Mm9::chr7:17788797..17788806,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Psg29
1.58e-86FFCP PHASE1:Mm9::chr1:71787899..71787904,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:71787899..71787904, -
1.58e-86FFCP PHASE2:Mm9::chr13:33048652..33048685,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:33048652..33048685, +
1.58e-86FFCP PHASE1:Mm9::chr13:27339701..27339760,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27339701..27339760, +
1.58e-86FFCP PHASE2:Mm9::chrX:136335507..136335518,+#_91d2790787b49f99f30f6e59cf5f4cc1p5@Cldn2
1.58e-86FFCP PHASE2:Mm9::chr13:61041994..61042014,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61041994..61042014, -
1.58e-86FFCP PHASE2:Mm9::chr14:102036767..102036774,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:102036767..102036774, -
1.58e-86FFCP PHASE2:Mm9::chr1:71787899..71787904,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:71787899..71787904, -
1.58e-86FFCP PHASE2:Mm9::chr5:114862554..114862564,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:114862554..114862564, +
1.58e-86FFCP PHASE2:Mm9::chr6:48879890..48879896,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@1600015I10Rik
1.58e-86FFCP PHASE2:Mm9::chr5:125523411..125523420,-#_91d2790787b49f99f30f6e59cf5f4cc1p24@Ncor2
1.58e-86FFCP PHASE1:Mm9::chr14:26461997..26462039,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:26461997..26462039, +
1.58e-86FFCP PHASE1:Mm9::chr11:55223511..55223524,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr11:55223511..55223524, -
1.58e-86FFCP PHASE2:Mm9::chr13:61105387..61105403,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61105387..61105403, +
1.58e-86FFCP PHASE1:Mm9::chr13:61265572..61265576,-#_91d2790787b49f99f30f6e59cf5f4cc1p2@Ctsr
1.58e-86FFCP PHASE1:Mm9::chr13:61040767..61040776,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61040767..61040776, -
1.58e-86FFCP PHASE2:Mm9::chr5:115211954..115211984,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:115211954..115211984, -
1.58e-86FFCP PHASE1:Mm9::chr9:111108246..111108253,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr9:111108246..111108253, +
1.58e-86FFCP PHASE1:Mm9::chrX:136335507..136335518,+#_91d2790787b49f99f30f6e59cf5f4cc1p5@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr5:115211954..115211984,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:115211954..115211984, -
1.58e-86FFCP PHASE2:Mm9::chrX:141915185..141915200,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chrX:141915185..141915200, -
1.58e-86FFCP PHASE2:Mm9::chr9:111108246..111108253,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr9:111108246..111108253, +
1.58e-86FFCP PHASE2:Mm9::chrX:136335520..136335531,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr9:57927144..57927163,+#_91d2790787b49f99f30f6e59cf5f4cc1p19@Stra6
1.58e-86FFCP PHASE2:Mm9::chr7:17788842..17788851,+#_91d2790787b49f99f30f6e59cf5f4cc1p2@Psg29
1.58e-86FFCP PHASE1:Mm9::chr13:27337674..27337690,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27337674..27337690, +
1.58e-86FFCP PHASE1:Mm9::chrX:141915185..141915200,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chrX:141915185..141915200, -
1.58e-86FFCP PHASE1:Mm9::chrX:136335520..136335531,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Cldn2
1.58e-86FFCP PHASE2:Mm9::chr1:63260883..63260896,-#_91d2790787b49f99f30f6e59cf5f4cc1p3@Gpr1
1.58e-86FFCP PHASE2:Mm9::chr9:57927144..57927163,+#_91d2790787b49f99f30f6e59cf5f4cc1p19@Stra6
1.58e-86FFCP PHASE2:Mm9::chr7:17749305..17749310,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr7:17749305..17749310, +
1.58e-86FFCP PHASE1:Mm9::chr7:17788842..17788851,+#_91d2790787b49f99f30f6e59cf5f4cc1p2@Psg29
1.58e-86FFCP PHASE2:Mm9::chr13:61265572..61265576,-#_91d2790787b49f99f30f6e59cf5f4cc1p2@Ctsr
1.58e-86FFCP PHASE1:Mm9::chr13:27341334..27341356,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27341334..27341356, -
1.58e-86FFCP PHASE1:Mm9::chr1:63260883..63260896,-#_91d2790787b49f99f30f6e59cf5f4cc1p3@Gpr1
1.58e-86FFCP PHASE2:Mm9::chr13:27341334..27341356,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27341334..27341356, -
1.58e-86FFCP PHASE1:Mm9::chr6:145765021..145765041,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:145765021..145765041, +
1.58e-86FFCP PHASE1:Mm9::chr1:193090931..193090940,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:193090931..193090940, +
1.58e-86FFCP PHASE1:Mm9::chr13:61041994..61042014,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61041994..61042014, -
1.58e-86FFCP PHASE2:Mm9::chr6:145765021..145765041,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:145765021..145765041, +
1.58e-86FFCP PHASE1:Mm9::chr15:78342035..78342046,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr15:78342035..78342046, -
1.2e-83FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_a15e390c39e4e85e831ebe6b833a987cp21@ST5
1.2e-83FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_a15e390c39e4e85e831ebe6b833a987cp21@ST5
1.39e-83FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_899107337649f545d6fbc396f58e2d31p16@ST5
1.39e-83FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_899107337649f545d6fbc396f58e2d31p16@ST5
2.0e-83FFCP PHASE2:Hg19::chr2:237682990..237683009,+#_ecd1c18dc236de508afe50526e6815ddp@chr2:237682990..237683009, +
2.0e-83FFCP PHASE1:Hg19::chr2:237682990..237683009,+#_ecd1c18dc236de508afe50526e6815ddp@chr2:237682990..237683009, +
4.85e-82FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_b37d61f1e96b1e761fb2e653ff6cdfa7p@chr2:237683156..237683171, +
4.85e-82FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_b37d61f1e96b1e761fb2e653ff6cdfa7p@chr2:237683156..237683171, +
1.89e-81FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_1297bbfe4c8188a5c11c92814ffa49cep@chr19:36592982..36592993, +
1.89e-81FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_1297bbfe4c8188a5c11c92814ffa49cep@chr19:36592982..36592993, +
3.49e-78FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_37d7b37317238aa0d967ac82a3328a49p17@ST5
3.49e-78FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_37d7b37317238aa0d967ac82a3328a49p17@ST5
2.4e-75FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_ca492a39293c2c12b48f894455545947p@chr15:68344995..68345013, +
2.4e-75FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_ca492a39293c2c12b48f894455545947p@chr15:68344995..68345013, +
1.93e-73FFCP PHASE1:Hg19::chr2:25862154..25862172,-#_503967efe8d22cfc03a5bba2d5cac469p14@DTNB
1.93e-73FFCP PHASE2:Hg19::chr2:25862154..25862172,-#_503967efe8d22cfc03a5bba2d5cac469p14@DTNB
2.39e-73FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_69643ec5c1d3458e412957d09d79a902p@chr2:237683212..237683239, +
2.39e-73FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_69643ec5c1d3458e412957d09d79a902p@chr2:237683212..237683239, +
3.28e-70FFCP PHASE1:Hg19::chr2:237682954..237682971,+#_29658aa5351d45309c5057f2064489acp@chr2:237682954..237682971, +
3.28e-70FFCP PHASE2:Hg19::chr2:237682954..237682971,+#_29658aa5351d45309c5057f2064489acp@chr2:237682954..237682971, +
3.51e-70FFCP PHASE1:Hg19::chr13:43636294..43636306,+#_91e50d06609c409917b63c82c4fa7023p@chr13:43636294..43636306, +
3.51e-70FFCP PHASE2:Hg19::chr13:43636294..43636306,+#_91e50d06609c409917b63c82c4fa7023p@chr13:43636294..43636306, +
8.51e-69FFCP PHASE1:Hg19::chr19:36592925..36592948,+#_7836d5e142e6ebc087991264ab4a2358p@chr19:36592925..36592948, +
8.51e-69FFCP PHASE2:Hg19::chr19:36592925..36592948,+#_7836d5e142e6ebc087991264ab4a2358p@chr19:36592925..36592948, +
3.88e-66FFCP PHASE1:Hg19::chr18:6286777..6286797,+#_378a3574081031f94d1002294d2c9622p@chr18:6286777..6286797, +
3.88e-66FFCP PHASE2:Hg19::chr18:6286777..6286797,+#_378a3574081031f94d1002294d2c9622p@chr18:6286777..6286797, +
1.33e-65FFCP PHASE1:Mm9::chrX:103450706..103450715,-#_be6a0714e61b8f18390fbff5e6973618p1@Fnd3c2
1.33e-65FFCP PHASE2:Mm9::chr9:57927165..57927189,+#_be6a0714e61b8f18390fbff5e6973618p7@Stra6
1.33e-65FFCP PHASE1:Mm9::chr7:17735559..17735585,+#_be6a0714e61b8f18390fbff5e6973618p1@Ceacam3
1.33e-65FFCP PHASE2:Mm9::chr12:110842625..110842630,-#_be6a0714e61b8f18390fbff5e6973618p@chr12:110842625..110842630, -

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