FFCP PHASE1:Hg19::chr2:201980867..201980923,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8837|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1876|TSSclassifier=S|UniProt=O15519,C9JK38,B4DJE0|association_with_transcript=0bp_to_ENST00000340870,ENST00000341222,ENST00000343375,ENST00000355558,ENST00000443227,NM_001127184,NM_001202516,NM_001202517,NM_001202519,NM_003879_5end|coexpression_cluster_id=C175|description=CAGE_peak_1_at_CFLAR_5end|id=chr2:201980867..201980923,+|ontology_enrichment_celltype=CL:0002057!1.09e-24!42;CL:0000766!4.97e-22!76;CL:0000738!2.04e-20!140;CL:0000860!2.33e-20!45;CL:0002009!5.19e-18!65;CL:0000557!7.24e-18!71;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0000839!2.15e-17!70;CL:0002031!1.44e-15!124;CL:0002087!2.06e-15!119;CL:0000037!9.75e-10!172;CL:0000566!9.75e-10!172;CL:0002032!1.50e-08!165;CL:0000837!1.50e-08!165;CL:0000791!1.96e-08!18;CL:0000789!1.96e-08!18;CL:0002420!1.96e-08!18;CL:0002419!1.96e-08!18;CL:0000790!1.96e-08!18;CL:0000763!3.06e-08!112;CL:0000049!3.06e-08!112;CL:0000988!4.81e-08!182|ontology_enrichment_celltype_v019=CL:0000860;7.88e-19;33!CL:0002057;7.88e-19;33!CL:0000473;3.24e-16;39!CL:0000234;3.24e-16;39!CL:0000576;1.42e-14;48!CL:0000766;5.58e-12;69!CL:0000791;1.95e-08;18!CL:0000789;1.95e-08;18!CL:0002419;1.95e-08;18|ontology_enrichment_celltype_v019_2=CL:0000766,4.21e-25,72;CL:0000473,6.79e-25,48;CL:0000234,6.79e-25,48;CL:0000860,1.09e-24,42;CL:0002057,1.09e-24,42;CL:0000738,2.41e-22,136;CL:0002009,5.42e-21,61;CL:0000557,1.20e-20,67;CL:0002194,1.34e-20,59;CL:0000576,1.34e-20,59;CL:0000040,1.34e-20,59;CL:0000559,1.34e-20,59;CL:0000839,3.76e-20,66;CL:0002031,2.62e-17,120;CL:0002087,3.47e-17,115;CL:0000037,8.64e-11,168;CL:0002032,1.54e-09,161;CL:0000837,1.54e-09,161;CL:0000763,1.90e-09,108;CL:0000049,1.90e-09,108;CL:0000988,3.12e-09,177;CL:0000791,1.96e-08,18;CL:0000789,1.96e-08,18;CL:0002420,1.96e-08,18;CL:0002419,1.96e-08,18;CL:0000790,1.96e-08,18|ontology_enrichment_development_v019=CL:0002057;5.12e-18;42!CL:0000790;1.95e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.71e-20!102;UBERON:0003061!2.71e-20!102;UBERON:0002193!1.87e-18!112;UBERON:0007023!1.44e-17!115;UBERON:0002371!2.11e-15!80;UBERON:0001474!2.24e-13!86;UBERON:0004765!1.87e-12!101;UBERON:0001434!1.87e-12!101;UBERON:0002405!8.18e-10!115;UBERON:0002204!5.87e-09!167;UBERON:0003081!1.23e-08!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.17e-22,98;UBERON:0003061,1.17e-22,98;UBERON:0002193,1.55e-20,108;UBERON:0002371,1.05e-17,76;UBERON:0007023,1.32e-17,114;UBERON:0002405,1.35e-15,93;UBERON:0001474,2.28e-15,82;UBERON:0004765,1.16e-14,90;UBERON:0001434,8.33e-14,100;UBERON:0003081,1.48e-10,203;UBERON:0002204,5.81e-10,167;UBERON:0000926,1.84e-07,315;UBERON:0004120,1.84e-07,315;UBERON:0006603,1.84e-07,315|phase1_expression=28.3418271662068,31.0445759641926,36.2252818526646,26.0190575718139,30.8403155154829,16.574431957907,27.8629865985142,17.0564365825244,36.3048023197776,6.38908234903923,2.09340350391728,16.6015442818931,15.8260186937072,11.5102708252843,16.2384714106679,23.5313801258121,21.6970030088632,19.7183724404591,17.5655807564582,6.89477925230012,4.48801520737357,8.14982275843028,5.72471974262113,5.74872585306114,6.90484517771415,2.13957536094264,2.05251473624864,3.46327437780189,66.8719270643137,75.2305620270537,35.9173406093296,3.67768489791571,7.8313538882345,20.7062245693401,2.16908161624845,2.84338464974843,17.6160263600908,64.8174627982297,103.079845999653,97.4378809514175,35.1547294556681,31.093791937822,32.9696726571759,81.7138101941154,67.2619179766081,80.0527401919793,97.6201955003875,77.2995629481032,96.6283877192723,96.6646438202426,75.3112477195556,95.775303104877,119.971496896343,93.5952791196548,116.466778471134,100.897893994836,73.1388482155027,90.5635642313691,113.557124069605,109.115869205872,108.687311385837,77.1852042436916,72.2058440590307,72.458207590558,106.796999815319,70.3557678617013,75.3614921284646,106.278185403602,85.523198620913,97.3006024278923,87.7829278818385,96.8570182647295,90.1917804206521,44.7861206981317,36.1427309940574,46.1249020118427,71.7779953026104,72.2350854567645,88.3990726833941,44.747000767376,43.3638356294016,49.1366573626865,38.719173781491,32.2221780644658,31.1328238852244,24.7503529088574,30.4300950147369,31.6113841974966,23.797615420255,26.7135051269902,55.7828709727259,34.0597569835145,45.8727873750275,34.3645454305467,44.8406850385229,12.1156678996535,92.6503017236154,111.615056620763,62.7084571948503,37.9513344536839,73.3325099925578,76.2250967232921,97.4133642039557,29.0781292470303,73.6514768687093,68.0109056371717,78.2623166280895,28.6924556185512,31.3443027619307,21.8702413122889,17.6864011382943,35.6457795454115,82.5956156812677,85.6130649887082,79.4469980917824,19.3758976012838,75.1112167459766,68.725489096526,82.7374392903774,53.8375550207723,51.4355928546571,43.7207940446252,54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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8837 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1876 | |||
|TSSclassifier=S | |||
|UniProt=O15519,C9JK38,B4DJE0 | |||
|association_with_transcript=0bp_to_ENST00000340870,ENST00000341222,ENST00000343375,ENST00000355558,ENST00000443227,NM_001127184,NM_001202516,NM_001202517,NM_001202519,NM_003879_5end | |||
|coexpression_cluster_id=C175 | |||
|description=CAGE_peak_1_at_CFLAR_5end | |||
|id=chr2:201980867..201980923,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.09e-24!42;CL:0000766!4.97e-22!76;CL:0000738!2.04e-20!140;CL:0000860!2.33e-20!45;CL:0002009!5.19e-18!65;CL:0000557!7.24e-18!71;CL:0002194!1.34e-17!63;CL:0000576!1.34e-17!63;CL:0000040!1.34e-17!63;CL:0000559!1.34e-17!63;CL:0000839!2.15e-17!70;CL:0002031!1.44e-15!124;CL:0002087!2.06e-15!119;CL:0000037!9.75e-10!172;CL:0000566!9.75e-10!172;CL:0002032!1.50e-08!165;CL:0000837!1.50e-08!165;CL:0000791!1.96e-08!18;CL:0000789!1.96e-08!18;CL:0002420!1.96e-08!18;CL:0002419!1.96e-08!18;CL:0000790!1.96e-08!18;CL:0000763!3.06e-08!112;CL:0000049!3.06e-08!112;CL:0000988!4.81e-08!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.88e-19;33!CL:0002057;7.88e-19;33!CL:0000473;3.24e-16;39!CL:0000234;3.24e-16;39!CL:0000576;1.42e-14;48!CL:0000766;5.58e-12;69!CL:0000791;1.95e-08;18!CL:0000789;1.95e-08;18!CL:0002419;1.95e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.21e-25,72;CL:0000473,6.79e-25,48;CL:0000234,6.79e-25,48;CL:0000860,1.09e-24,42;CL:0002057,1.09e-24,42;CL:0000738,2.41e-22,136;CL:0002009,5.42e-21,61;CL:0000557,1.20e-20,67;CL:0002194,1.34e-20,59;CL:0000576,1.34e-20,59;CL:0000040,1.34e-20,59;CL:0000559,1.34e-20,59;CL:0000839,3.76e-20,66;CL:0002031,2.62e-17,120;CL:0002087,3.47e-17,115;CL:0000037,8.64e-11,168;CL:0002032,1.54e-09,161;CL:0000837,1.54e-09,161;CL:0000763,1.90e-09,108;CL:0000049,1.90e-09,108;CL:0000988,3.12e-09,177;CL:0000791,1.96e-08,18;CL:0000789,1.96e-08,18;CL:0002420,1.96e-08,18;CL:0002419,1.96e-08,18;CL:0000790,1.96e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002057;5.12e-18;42!CL:0000790;1.95e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.71e-20!102;UBERON:0003061!2.71e-20!102;UBERON:0002193!1.87e-18!112;UBERON:0007023!1.44e-17!115;UBERON:0002371!2.11e-15!80;UBERON:0001474!2.24e-13!86;UBERON:0004765!1.87e-12!101;UBERON:0001434!1.87e-12!101;UBERON:0002405!8.18e-10!115;UBERON:0002204!5.87e-09!167;UBERON:0003081!1.23e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
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|short_description=p1@CFLAR | |||
}} |
Revision as of 15:59, 12 September 2013
Short description: | p1@CFLAR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CFLAR_5end |
Coexpression cluster: | C175_Eosinophils_Neutrophils_CD4_Basophils_CD19_CD8_Natural |
Association with transcript: | 0bp_to_ENST00000340870, ENST00000341222, ENST00000343375, ENST00000355558, ENST00000443227, NM_001127184, NM_001202516, NM_001202517, NM_001202519, NM_003879_5end |
EntrezGene: | CFLAR |
HGNC: | 1876 |
UniProt: | O15519C9JK38B4DJE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.21e-25 | 72 |
defensive cell | 6.79e-25 | 48 |
phagocyte | 6.79e-25 | 48 |
classical monocyte | 1.09e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.09e-24 | 42 |
leukocyte | 2.41e-22 | 136 |
macrophage dendritic cell progenitor | 5.42e-21 | 61 |
granulocyte monocyte progenitor cell | 1.20e-20 | 67 |
monopoietic cell | 1.34e-20 | 59 |
monocyte | 1.34e-20 | 59 |
monoblast | 1.34e-20 | 59 |
promonocyte | 1.34e-20 | 59 |
myeloid lineage restricted progenitor cell | 3.76e-20 | 66 |
hematopoietic lineage restricted progenitor cell | 2.62e-17 | 120 |
nongranular leukocyte | 3.47e-17 | 115 |
hematopoietic stem cell | 8.64e-11 | 168 |
hematopoietic oligopotent progenitor cell | 1.54e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.54e-09 | 161 |
myeloid cell | 1.90e-09 | 108 |
common myeloid progenitor | 1.90e-09 | 108 |
hematopoietic cell | 3.12e-09 | 177 |
mature alpha-beta T cell | 1.96e-08 | 18 |
alpha-beta T cell | 1.96e-08 | 18 |
immature T cell | 1.96e-08 | 18 |
mature T cell | 1.96e-08 | 18 |
immature alpha-beta T cell | 1.96e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.17e-22 | 98 |
blood island | 1.17e-22 | 98 |
hemolymphoid system | 1.55e-20 | 108 |
bone marrow | 1.05e-17 | 76 |
adult organism | 1.32e-17 | 114 |
immune system | 1.35e-15 | 93 |
bone element | 2.28e-15 | 82 |
skeletal element | 1.16e-14 | 90 |
skeletal system | 8.33e-14 | 100 |
lateral plate mesoderm | 1.48e-10 | 203 |
musculoskeletal system | 5.81e-10 | 167 |
mesoderm | 1.84e-07 | 315 |
mesoderm-derived structure | 1.84e-07 | 315 |
presumptive mesoderm | 1.84e-07 | 315 |
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