FFCP PHASE1:Mm9::chr2:24831566..24831630,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=241274|HGNC=|MCL_coexpression_id=3|UniProt=D6RDR4,B0R010,B0R009,B9EJ75|association_with_transcript=0bp_to_ENSMUST00000137913,ENSMUST00000139031,ENSMUST00000152777,ENSMUST00000153618,uc008ipx.2_5end|description=CAGE_peak_1_at_Pnpla7_5end|id=chr2:24831566..24831630,+|ontology_enrichment_celltype=CL:0002320!4.45e-08!46;CL:0000134!4.45e-08!46;CL:0000988!5.10e-08!32;CL:0002032!5.10e-08!32;CL:0000037!5.10e-08!32;CL:0000566!5.10e-08!32;CL:0000837!5.10e-08!32;CL:0002031!6.01e-07!25|ontology_enrichment_celltype_v019_2=CL:0002320,4.07e-08,46;CL:0000134,4.07e-08,46;CL:0000988,4.66e-08,32;CL:0002032,4.66e-08,32;CL:0000037,4.66e-08,32;CL:0000837,4.66e-08,32;CL:0002031,5.48e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!2.84e-18!70;UBERON:0002193!2.68e-12!48;UBERON:0002390!1.60e-11!45;UBERON:0003061!1.60e-11!45;UBERON:0000926!2.52e-11!193;UBERON:0004120!2.52e-11!193;UBERON:0006603!2.52e-11!193;UBERON:0005057!5.65e-11!51;UBERON:0002384!4.45e-08!46;UBERON:0003081!7.03e-08!88;UBERON:0002365!2.55e-07!25;UBERON:0002330!2.55e-07!25;UBERON:0002371!2.59e-07!16;UBERON:0003104!3.98e-07!131;UBERON:0009142!3.98e-07!131;UBERON:0005172!4.47e-07!49;UBERON:0005173!4.47e-07!49;UBERON:0002417!4.47e-07!49;UBERON:0000916!4.47e-07!49;UBERON:0000949!4.75e-07!72;UBERON:0001474!5.48e-07!22;UBERON:0004765!5.48e-07!22;UBERON:0001434!5.48e-07!22|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.43e-12,48;UBERON:0002405,2.43e-12,48;UBERON:0002390,1.45e-11,45;UBERON:0003061,1.45e-11,45;UBERON:0002384,4.07e-08,46;UBERON:0000926,5.10e-08,120;UBERON:0004120,5.10e-08,120;UBERON:0006603,5.10e-08,120;UBERON:0003081,1.72e-07,87;UBERON:0002365,2.54e-07,25;UBERON:0002330,2.54e-07,25;UBERON:0002371,2.58e-07,16;UBERON:0005172,4.17e-07,49;UBERON:0005173,4.17e-07,49;UBERON:0002417,4.17e-07,49;UBERON:0000916,4.17e-07,49;UBERON:0000949,4.48e-07,72;UBERON:0001474,5.46e-07,22;UBERON:0004765,5.46e-07,22;UBERON:0001434,5.46e-07,22|phase1_expression=2.88267924788629,2.79180326111489,1.36499771816861,1.20985684522732,0,4.02910252588535,4.43864017131499,28.9236244509131,6.19470377467334,5.85161315804984,8.38968044304974,7.09972215058494,26.5361131393369,36.0172057966269,7.66152452176024,10.9336644390506,18.1886088313318,37.224535512272,38.6662702768183,26.3121584114779,9.77997836737302,31.9716862866851,32.1275740640891,7.51964387129011,11.2410547722913,1.72269589234506,2.15380998079537,3.66301095566011,3.04037471130198,2.77233142735924,3.76941868114018,5.71527606113668,7.99584223859941,0,4.62162591602039,3.65716219788683,6.53341940039581,171.179436971395,69.5388456626182,141.351410872926,203.528094858731,179.640962544071,160.218416500281,5.5394599909254,5.87986201073184,4.40512205188036,0,1.96222640742402,3.95435128922049,2.3331587888914,1.81982348112971,1.43752564364972,35.4021298781824,16.6833292662609,35.2898489099587,1.80081605225163,3.72493471920384,2.57836046138721,0.606949382578793,0.528990979272033,0.633831403506179,0.338844532069132,2.66788438833342,42.2952867122258,31.6437236021432,31.9716051725745,8.98800331555214,7.30014780110954,0.933206510776299,0.270011876663381,1.05162480675691,1.42825492201902,1.54607978666129,0.61245399607477,1.0543001812006,0.919218786610021,4.40463523997555,3.44755812830007,4.76180253094355,0,0.548925861614458,1.04182674111352,5.58365998002762,3.93933827022176,5.80633341551878,2.06240009831567,0.854230084794618,0.186399445825301,1.8931548333296,3.77857800533928,11.3047150593654,6.88339101585109,8.83962733820076,11.873470216032,19.4932925234301,21.9533174677694,12.4995533917259,4.09032774187339,2.07828803682295,3.5333957451034,1.26759077799012,1.28326477414318,5.09610479413291,0,0.216491041011214,0.253359865475099,0,13.8162494460063,39.6174961980173,16.0317510190011,4.51061849591953,6.08930956624282,7.61031140944993,8.59119051149949,14.4634109776917,7.1629957057915,1.23597483867187,11.5679485535929,30.9613693182456,11.1619126463712,20.3174196983562,14.0613823409214,7.45567044872489,4.39171195517321,6.28340120440365,5.36459815938042,14.6174451897223,10.1983464268879,22.2372897377863,8.98743836428936,7.32000964509802,0.628271760564322,4.34560800480691,5.11430914660661,7.89594569326328,7.78758062725237,5.39748628406676,25.2546150338489,6.82351447770922,31.3558365270846,1.82168620147785,2.29902104433473,2.34080768746954,3.61691562805716,6.46346741937615,6.27757229395764,6.93392761741993,10.3481348295606,1.72454394346274,2.45837904218165,1.75951124163949,2.6303487891309,3.61461423993277,5.57203466435466,6.1734640922383,4.37875387000685,12.6398373716382,13.6394390770799,16.1973194655488,3.31401236056803,4.45599513964083,4.32148947506436,4.97163944728941,6.68998387941173,5.24508183817086,6.97601834251224,4.82892122519315,17.1645053279739,4.11399624783701,7.71587081171748,6.56657357321431,9.21059920779594,8.78200461164202,15.2995317386824,6.9395683026162,1.74937841044784,3.96502539580558,1.58670339998127,1.70630600428187,1.16118335930219,2.19074684247559,8.06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| ||
|EntrezGene=241274 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=D6RDR4,B0R010,B0R009,B9EJ75 | |||
|association_with_transcript=0bp_to_ENSMUST00000137913,ENSMUST00000139031,ENSMUST00000152777,ENSMUST00000153618,uc008ipx.2_5end | |||
|description=CAGE_peak_1_at_Pnpla7_5end | |||
|id=chr2:24831566..24831630,+ | |||
|ontology_enrichment_celltype=CL:0002320!4.45e-08!46;CL:0000134!4.45e-08!46;CL:0000988!5.10e-08!32;CL:0002032!5.10e-08!32;CL:0000037!5.10e-08!32;CL:0000566!5.10e-08!32;CL:0000837!5.10e-08!32;CL:0002031!6.01e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002320,4.07e-08,46;CL:0000134,4.07e-08,46;CL:0000988,4.66e-08,32;CL:0002032,4.66e-08,32;CL:0000037,4.66e-08,32;CL:0000837,4.66e-08,32;CL:0002031,5.48e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.84e-18!70;UBERON:0002193!2.68e-12!48;UBERON:0002390!1.60e-11!45;UBERON:0003061!1.60e-11!45;UBERON:0000926!2.52e-11!193;UBERON:0004120!2.52e-11!193;UBERON:0006603!2.52e-11!193;UBERON:0005057!5.65e-11!51;UBERON:0002384!4.45e-08!46;UBERON:0003081!7.03e-08!88;UBERON:0002365!2.55e-07!25;UBERON:0002330!2.55e-07!25;UBERON:0002371!2.59e-07!16;UBERON:0003104!3.98e-07!131;UBERON:0009142!3.98e-07!131;UBERON:0005172!4.47e-07!49;UBERON:0005173!4.47e-07!49;UBERON:0002417!4.47e-07!49;UBERON:0000916!4.47e-07!49;UBERON:0000949!4.75e-07!72;UBERON:0001474!5.48e-07!22;UBERON:0004765!5.48e-07!22;UBERON:0001434!5.48e-07!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.43e-12,48;UBERON:0002405,2.43e-12,48;UBERON:0002390,1.45e-11,45;UBERON:0003061,1.45e-11,45;UBERON:0002384,4.07e-08,46;UBERON:0000926,5.10e-08,120;UBERON:0004120,5.10e-08,120;UBERON:0006603,5.10e-08,120;UBERON:0003081,1.72e-07,87;UBERON:0002365,2.54e-07,25;UBERON:0002330,2.54e-07,25;UBERON:0002371,2.58e-07,16;UBERON:0005172,4.17e-07,49;UBERON:0005173,4.17e-07,49;UBERON:0002417,4.17e-07,49;UBERON:0000916,4.17e-07,49;UBERON:0000949,4.48e-07,72;UBERON:0001474,5.46e-07,22;UBERON:0004765,5.46e-07,22;UBERON:0001434,5.46e-07,22 | |||
|phase1_expression=2.88267924788629,2.79180326111489,1.36499771816861,1.20985684522732,0,4.02910252588535,4.43864017131499,28.9236244509131,6.19470377467334,5.85161315804984,8.38968044304974,7.09972215058494,26.5361131393369,36.0172057966269,7.66152452176024,10.9336644390506,18.1886088313318,37.224535512272,38.6662702768183,26.3121584114779,9.77997836737302,31.9716862866851,32.1275740640891,7.51964387129011,11.2410547722913,1.72269589234506,2.15380998079537,3.66301095566011,3.04037471130198,2.77233142735924,3.76941868114018,5.71527606113668,7.99584223859941,0,4.62162591602039,3.65716219788683,6.53341940039581,171.179436971395,69.5388456626182,141.351410872926,203.528094858731,179.640962544071,160.218416500281,5.5394599909254,5.87986201073184,4.40512205188036,0,1.96222640742402,3.95435128922049,2.3331587888914,1.81982348112971,1.43752564364972,35.4021298781824,16.6833292662609,35.2898489099587,1.80081605225163,3.72493471920384,2.57836046138721,0.606949382578793,0.528990979272033,0.633831403506179,0.338844532069132,2.66788438833342,42.2952867122258,31.6437236021432,31.9716051725745,8.98800331555214,7.30014780110954,0.933206510776299,0.270011876663381,1.05162480675691,1.42825492201902,1.54607978666129,0.61245399607477,1.0543001812006,0.919218786610021,4.40463523997555,3.44755812830007,4.76180253094355,0,0.548925861614458,1.04182674111352,5.58365998002762,3.93933827022176,5.80633341551878,2.06240009831567,0.854230084794618,0.186399445825301,1.8931548333296,3.77857800533928,11.3047150593654,6.88339101585109,8.83962733820076,11.873470216032,19.4932925234301,21.9533174677694,12.4995533917259,4.09032774187339,2.07828803682295,3.5333957451034,1.26759077799012,1.28326477414318,5.09610479413291,0,0.216491041011214,0.253359865475099,0,13.8162494460063,39.6174961980173,16.0317510190011,4.51061849591953,6.08930956624282,7.61031140944993,8.59119051149949,14.4634109776917,7.1629957057915,1.23597483867187,11.5679485535929,30.9613693182456,11.1619126463712,20.3174196983562,14.0613823409214,7.45567044872489,4.39171195517321,6.28340120440365,5.36459815938042,14.6174451897223,10.1983464268879,22.2372897377863,8.98743836428936,7.32000964509802,0.628271760564322,4.34560800480691,5.11430914660661,7.89594569326328,7.78758062725237,5.39748628406676,25.2546150338489,6.82351447770922,31.3558365270846,1.82168620147785,2.29902104433473,2.34080768746954,3.61691562805716,6.46346741937615,6.27757229395764,6.93392761741993,10.3481348295606,1.72454394346274,2.45837904218165,1.75951124163949,2.6303487891309,3.61461423993277,5.57203466435466,6.1734640922383,4.37875387000685,12.6398373716382,13.6394390770799,16.1973194655488,3.31401236056803,4.45599513964083,4.32148947506436,4.97163944728941,6.68998387941173,5.24508183817086,6.97601834251224,4.82892122519315,17.1645053279739,4.11399624783701,7.71587081171748,6.56657357321431,9.21059920779594,8.78200461164202,15.2995317386824,6.9395683026162,1.74937841044784,3.96502539580558,1.58670339998127,1.70630600428187,1.16118335930219,2.19074684247559,8.0673409849337,14.4545728499166,15.2180500890047,2.37264530772256,14.987604879885,23.1228392096248,24.8695590051439,13.4525220112193,5.39291645192533,4.10662294761919,4.97853183135918,2.27601481143698,2.74196430263349,0,5.7022371796688,4.46090720485539,6.73303870947058,6.45012678667424,8.56138858281692,12.2459007716272,19.0031632439573,22.8268522857105,9.00963570866908,6.2898878436225,11.2431056192427,11.9687471619217,10.1294407096015,12.9859184408524,11.2201493605816,30.3192874069316,10.4333337011471,11.5014565221884,16.7463426450827,12.1694692514679,12.1237861414614,12.9166137735777,25.5695066322585,17.736306255994,0.947457058852424,1.79261474086228,2.20668611507745,1.64283173801951,4.02015017860358,4.99891645860629,7.41507861859636,6.30540576424764,8.41565820665345,5.26200736569707,14.9115616391322,11.3972088031491,20.8294644357377,116.10928863324,63.0930593229703,11.8023425524569,15.452457793065,8.66973185934077,7.501547941901,1.80328439914343,25.752034574846,1.26203287766503,1.95219372148319,1.29254038639679,3.82350076724083,4.45597348164788,1.13230612315533,1.21443210502468,4.38383786866968,2.76701444562566,6.10510501201433,7.09700426041343,5.1639025063504,5.53815661802159,12.2077890999676,9.2921596837974,5.09839335925461,3.93020624054176,6.03536255218874,9.15435867930396,7.07100840271033,11.62927319257,12.3601468022352,12.4774082434652,11.3773232856894,9.48767477174989,7.21948802737308,2.04263763452273,1.98067203434441,1.16422815404479,1.71469628025274,2.48276327099183,3.74574516964348,5.10101963866575,6.39376393140658,4.69343416127421,2.75381692122966,2.64634077665954,7.25499512942512,15.339120536111,4.22190474497091,4.65552141612232,4.26766339337159,5.53813589596716,8.71498919449395,20.846247457338,13.2087595496462,22.2233432843654,18.8368457004691,18.1803322868963,20.132479242174,28.21641937898,32.1888340344413,21.4209959396857,0.954670618015114,1.89801596148681,3.45643094115643,3.02414954301044,1.25452977608681,5.02233896616208,3.77620169877498,5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| |||
|short_description=p1@Pnpla7 | |||
}} |
Revision as of 23:24, 13 September 2013
Short description: | p1@Pnpla7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pnpla7_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 0bp_to_ENSMUST00000137913, ENSMUST00000139031, ENSMUST00000152777, ENSMUST00000153618, uc008ipx.2_5end |
EntrezGene: | Pnpla7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue cell | 4.07e-08 | 46 |
mesenchymal cell | 4.07e-08 | 46 |
hematopoietic cell | 4.66e-08 | 32 |
hematopoietic oligopotent progenitor cell | 4.66e-08 | 32 |
hematopoietic stem cell | 4.66e-08 | 32 |
hematopoietic multipotent progenitor cell | 4.66e-08 | 32 |
hematopoietic lineage restricted progenitor cell | 5.48e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.43e-12 | 48 |
immune system | 2.43e-12 | 48 |
hematopoietic system | 1.45e-11 | 45 |
blood island | 1.45e-11 | 45 |
connective tissue | 4.07e-08 | 46 |
mesoderm | 5.10e-08 | 120 |
mesoderm-derived structure | 5.10e-08 | 120 |
presumptive mesoderm | 5.10e-08 | 120 |
lateral plate mesoderm | 1.72e-07 | 87 |
exocrine gland | 2.54e-07 | 25 |
exocrine system | 2.54e-07 | 25 |
bone marrow | 2.58e-07 | 16 |
abdomen element | 4.17e-07 | 49 |
abdominal segment element | 4.17e-07 | 49 |
abdominal segment of trunk | 4.17e-07 | 49 |
abdomen | 4.17e-07 | 49 |
endocrine system | 4.48e-07 | 72 |
bone element | 5.46e-07 | 22 |
skeletal element | 5.46e-07 | 22 |
skeletal system | 5.46e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.