FFCP PHASE1:Hg19::chr7:23286379..23286401,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10457|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4462|TSSclassifier=W|UniProt=F5GY20,F6SKP1|association_with_transcript=0bp_to_ENST00000453162,ENST00000459927,ENST00000474157,ENST00000487890,ENST00000539136_5end|coexpression_cluster_id=C67|description=CAGE_peak_1_at_GPNMB_5end|id=chr7:23286379..23286401,+|ontology_enrichment_celltype=CL:0000055!2.07e-12!180;CL:0000057!5.88e-09!75|ontology_enrichment_celltype_v019=CL:0000134;3.33e-07;55|ontology_enrichment_celltype_v019_2=CL:0000057,6.03e-09,76|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000062!3.35e-18!511;UBERON:0000468!8.87e-17!659;UBERON:0000467!4.87e-14!625;UBERON:0000480!9.84e-14!626;UBERON:0003102!1.18e-12!95;UBERON:0002204!1.08e-10!167;UBERON:0002050!6.05e-09!605;UBERON:0005423!6.05e-09!605;UBERON:0000923!7.42e-09!604;UBERON:0005291!7.42e-09!604;UBERON:0006598!7.42e-09!604;UBERON:0002532!7.42e-09!604;UBERON:0000922!1.40e-08!612;UBERON:0002199!1.32e-07!45;UBERON:0002416!1.32e-07!45;UBERON:0000165!2.64e-07!28;UBERON:0000930!2.64e-07!28;UBERON:0004765!6.20e-07!101;UBERON:0001434!6.20e-07!101;UBERON:0002097!8.15e-07!40|ontology_enrichment_uberon_v019=UBERON:0000165;2.03e-07;28|ontology_enrichment_uberon_v019_2=UBERON:0003102,4.32e-13,99;UBERON:0002204,7.60e-12,167;UBERON:0002050,1.53e-09,564;UBERON:0000923,2.99e-09,560;UBERON:0010316,2.99e-09,560;UBERON:0005291,2.99e-09,560;UBERON:0006598,2.99e-09,560;UBERON:0010317,2.99e-09,560;UBERON:0002532,2.99e-09,560;UBERON:0000926,6.12e-09,315;UBERON:0004120,6.12e-09,315;UBERON:0006603,6.12e-09,315;UBERON:0005423,2.29e-08,581;UBERON:0002199,2.92e-08,46;UBERON:0002416,2.92e-08,46;UBERON:0004923,3.45e-08,66;UBERON:0000165,1.04e-07,29;UBERON:0000930,1.04e-07,29;UBERON:0001434,1.16e-07,100;UBERON:0002097,1.88e-07,41;UBERON:0000922,5.03e-07,592|phase1_expression=468.003505000954,246.429702998522,348.580241329337,146.10701559557,201.13249249228,127.361424518654,25.3299878168311,424.51575494283,93.765640523742,1.22866968250754,0,0,11.605747042052,52.1056345961796,34.7967244514312,131.775728704548,19.2862248967673,19.7183724404591,17.0776479576677,0.369363174230364,0.204000691244253,0,4.57977579409691,0.273748850145768,0.627713197974014,0.687720651731561,0.164201178899891,0.0787107813136792,0.786728553697808,1.15148819429164,5.41856431606266,0,0.30120591877825,0,0.0774672005803016,0.142169232487422,0,1.66198622559563,1.20326668482085,0.434021741431704,9647.1742921529,11614.1790761086,9705.18981288852,46.2366399319016,280.006074273408,93.8800316796849,59.0369753740439,291.518032607474,178.081163264685,8.05538698502021,30.483124076963,29.5602787360732,16.8925383560943,111.668850260002,81.2558919566051,62.3082143886022,404.719820535785,221.352632178408,22.038040250705,209.887583707765,74.1631065926888,6.26717470354761,29.9195486432448,15.7703157697097,9.57690487474327,43.1212770765266,36.7465126907389,16.3311632416883,62.056467292004,49.9534342821768,21.1889825921679,74.7603601054756,54.1150682523912,5.28138215779854,4.889898899196,5.2414661377094,0.22465726229299,1.35159203557356,1.44653028027372,0.570025487482497,0.79566670879636,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,80.4562658836074,9.38981203585091,12.9141187461966,100.841523515294,30.0802746381534,124.568006306308,278.350081467885,36.4976152726977,1.70162670895322,0.886917589850256,2.63504357079378,84.8744409225178,8.74308691902101,7.04490441290416,304.425455248093,321.791754529046,644.846108516496,0.953962497221368,0.571994910780128,0,0,10.3228151412735,0,0,0,0,0,15.7634223093291,160.09481820902,22.0915604424682,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.366403487860815,0,0,0,3.47880366186723,88.3880971418767,535.462727208657,692.423602487636,98.5978102511433,30.8372680078269,2.1349799145941,9.37336683985208,204.465650257646,13.0669351907597,11.4423332179421,7.11379909931178,3.45705554687999,30.4617861383936,203.840530170199,65.0337876560672,193.386592634031,25.483286205697,19.5866262685439,24.5788911728935,147.399311646033,60.0659811654545,205.411652977422,813.781957238207,322.18880884996,2.73048408581408,1.43723628363248,83.3263764072628,27.901429931448,179.260482718266,28.0945677363736,80.6062902951422,365.07848314303,11.7969470486422,84.1337391380763,167.428992833757,78.6267353301974,122.437167202436,101.609793829101,92.2353133363352,111.483996942622,242.869142095182,70.0572067109018,61.0889733670757,149.028785901883,511.60976983154,143.068865784196,57.9324564808932,31.5382701697507,142.239987928186,73.6414525595253,47.6095628345746,0.243947412259191,0.132529768321485,0.348581828608555,4.35376431064556,0.504641701751257,0.36497735907583,23.4674298494724,63.0376119429028,17.9575397758225,240.078218792533,363.105379279802,39.8693916134274,39.44881747827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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10457 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4462 | |||
|TSSclassifier=W | |||
|UniProt=F5GY20,F6SKP1 | |||
|association_with_transcript=0bp_to_ENST00000453162,ENST00000459927,ENST00000474157,ENST00000487890,ENST00000539136_5end | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_1_at_GPNMB_5end | |||
|id=chr7:23286379..23286401,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.07e-12!180;CL:0000057!5.88e-09!75 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.33e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.03e-09,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!3.35e-18!511;UBERON:0000468!8.87e-17!659;UBERON:0000467!4.87e-14!625;UBERON:0000480!9.84e-14!626;UBERON:0003102!1.18e-12!95;UBERON:0002204!1.08e-10!167;UBERON:0002050!6.05e-09!605;UBERON:0005423!6.05e-09!605;UBERON:0000923!7.42e-09!604;UBERON:0005291!7.42e-09!604;UBERON:0006598!7.42e-09!604;UBERON:0002532!7.42e-09!604;UBERON:0000922!1.40e-08!612;UBERON:0002199!1.32e-07!45;UBERON:0002416!1.32e-07!45;UBERON:0000165!2.64e-07!28;UBERON:0000930!2.64e-07!28;UBERON:0004765!6.20e-07!101;UBERON:0001434!6.20e-07!101;UBERON:0002097!8.15e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;2.03e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,4.32e-13,99;UBERON:0002204,7.60e-12,167;UBERON:0002050,1.53e-09,564;UBERON:0000923,2.99e-09,560;UBERON:0010316,2.99e-09,560;UBERON:0005291,2.99e-09,560;UBERON:0006598,2.99e-09,560;UBERON:0010317,2.99e-09,560;UBERON:0002532,2.99e-09,560;UBERON:0000926,6.12e-09,315;UBERON:0004120,6.12e-09,315;UBERON:0006603,6.12e-09,315;UBERON:0005423,2.29e-08,581;UBERON:0002199,2.92e-08,46;UBERON:0002416,2.92e-08,46;UBERON:0004923,3.45e-08,66;UBERON:0000165,1.04e-07,29;UBERON:0000930,1.04e-07,29;UBERON:0001434,1.16e-07,100;UBERON:0002097,1.88e-07,41;UBERON:0000922,5.03e-07,592 | |||
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| |||
|short_description=p1@GPNMB | |||
}} |
Revision as of 00:33, 14 September 2013
Short description: | p1@GPNMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GPNMB_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | 0bp_to_ENST00000453162, ENST00000459927, ENST00000474157, ENST00000487890, ENST00000539136_5end |
EntrezGene: | GPNMB |
HGNC: | 4462 |
UniProt: | F5GY20F6SKP1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.03e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
surface structure | 4.32e-13 | 99 |
musculoskeletal system | 7.60e-12 | 167 |
embryonic structure | 1.53e-09 | 564 |
germ layer | 2.99e-09 | 560 |
germ layer / neural crest | 2.99e-09 | 560 |
embryonic tissue | 2.99e-09 | 560 |
presumptive structure | 2.99e-09 | 560 |
germ layer / neural crest derived structure | 2.99e-09 | 560 |
epiblast (generic) | 2.99e-09 | 560 |
mesoderm | 6.12e-09 | 315 |
mesoderm-derived structure | 6.12e-09 | 315 |
presumptive mesoderm | 6.12e-09 | 315 |
developing anatomical structure | 2.29e-08 | 581 |
integument | 2.92e-08 | 46 |
integumental system | 2.92e-08 | 46 |
organ component layer | 3.45e-08 | 66 |
mouth | 1.04e-07 | 29 |
stomodeum | 1.04e-07 | 29 |
skeletal system | 1.16e-07 | 100 |
skin of body | 1.88e-07 | 41 |
embryo | 5.03e-07 | 592 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.