FFCP PHASE1:Mm9::chr3:34095844..34095855,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=107|UniProt=|association_with_transcript=58bp_to_ENSMUST00000174785_5end|description=CAGE_peak_1_at_ENSMUST00000174785_5end|id=chr3:34095844..34095855,+|ontology_enrichment_celltype=CL:0000540!2.96e-18!33;CL:0000047!2.96e-18!33;CL:0000031!2.96e-18!33;CL:0000404!2.96e-18!33;CL:0000393!3.81e-14!39;CL:0000211!3.81e-14!39;CL:0002319!3.41e-13!43;CL:0000221!1.05e-12!44;CL:0000133!1.05e-12!44;CL:0000107!1.59e-12!9;CL:0000055!3.38e-10!50;CL:0000117!2.19e-09!23;CL:0000337!2.19e-09!23|ontology_enrichment_celltype_v019_2=CL:0000107,4.95e-35,9;CL:0000540,5.34e-15,33;CL:0000047,5.34e-15,33;CL:0000031,5.34e-15,33;CL:0000404,5.34e-15,33;CL:0000393,1.51e-12,39;CL:0000211,1.51e-12,39;CL:0002319,2.73e-11,43;CL:0000221,5.19e-11,44;CL:0000133,5.19e-11,44;CL:0002608,2.63e-09,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.48e-26!73;UBERON:0005743!2.48e-26!73;UBERON:0000073!3.23e-25!75;UBERON:0001016!3.23e-25!75;UBERON:0004121!2.76e-19!102;UBERON:0000924!2.76e-19!102;UBERON:0006601!2.76e-19!102;UBERON:0002346!4.19e-18!71;UBERON:0003075!4.19e-18!71;UBERON:0007284!4.19e-18!71;UBERON:0003056!1.13e-17!49;UBERON:0001049!5.33e-17!52;UBERON:0005068!5.33e-17!52;UBERON:0006241!5.33e-17!52;UBERON:0007135!5.33e-17!52;UBERON:0003080!1.42e-16!40;UBERON:0000955!1.37e-15!50;UBERON:0006238!1.37e-15!50;UBERON:0002780!1.44e-15!39;UBERON:0001890!1.44e-15!39;UBERON:0006240!1.44e-15!39;UBERON:0000033!3.56e-15!63;UBERON:0002020!5.43e-15!34;UBERON:0002616!6.73e-15!49;UBERON:0002410!1.59e-12!9;UBERON:0002791!9.58e-12!29;UBERON:0003528!9.58e-12!29;UBERON:0001893!9.58e-12!29;UBERON:0000010!9.94e-10!11;UBERON:0002619!2.47e-08!17;UBERON:0007811!2.83e-08!86;UBERON:0000956!4.58e-08!21;UBERON:0001869!4.58e-08!21;UBERON:0000203!4.58e-08!21;UBERON:0000153!9.49e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002410,4.95e-35,9;UBERON:0000010,1.36e-28,11;UBERON:0000011,1.22e-20,3;UBERON:0010313,4.63e-20,3;UBERON:0002342,4.63e-20,3;UBERON:0002005,4.63e-20,3;UBERON:0005428,4.63e-20,3;UBERON:0005062,4.63e-20,3;UBERON:0001017,1.24e-15,73;UBERON:0001016,3.51e-15,75;UBERON:0004121,1.10e-11,95;UBERON:0000924,1.10e-11,95;UBERON:0006601,1.10e-11,95;UBERON:0002346,1.23e-08,64;UBERON:0003075,1.23e-08,64;UBERON:0007284,1.23e-08,64;UBERON:0010371,1.99e-07,73;UBERON:0002259,2.74e-07,1;UBERON:0002314,2.74e-07,1;UBERON:0004061,2.74e-07,1;UBERON:0006777,2.74e-07,1;UBERON:0005882,2.74e-07,1;UBERON:0003080,5.85e-07,40|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,0,0,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.135005938331691,0,0.285650984403804,0.220868540951614,0.61245399607477,1.62937300731002,1.83843757322004,0,0.255374676170375,0.153606533256243,0.791317726381163,0.365950574409639,0.52091337055676,0,0,0.30559649555362,0.294628585473668,0.427115042397309,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04853447583376,0.915001205637253,1.00523481690292,0,0.255715457330331,0.62336413367868,0.973447578406546,0,0,0,0,0,0,0,0.60281927134286,0.272145996605311,0.2562274405697,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.308713837137853,0,0,0.213288250535234,0.696710015581316,0.644337306610467,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234423373184406,0,0,3.78609863299508,3.51394869866975,2.58508077279359,5.01834475700359,4.01037613348309,4.81230102341015,0.809621403349789,0.876767573733936,1.97643888973262,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26042765821917,0.517434735131018,1.07168517515796,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.324016022465404,0.627264888043406,0.218362563746178,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,1.14579102687879,0.343706364687375,0,0,0.675022500231806,0.45032120322422,0.453142408984205,0,0.103787347584177,0,0.512200817262403,0,0,0,0.44449345560323,0,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0,0.384150914429216,0.287177344778066,0,0.347652977834566,0.192909220463705,0,0,0,0.532427418478012,0.238436189947321,0.436039249896986,0.658765662907314,0.423073039458382,0.182927972872773,0,0.271608227691724,0,0,0,0.818462086339379,0.154936841185966,0.192906610981141,0,0,0,0,0,0|short_description=p1@ENSMUST00000174785}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=107 | |||
|UniProt= | |||
|association_with_transcript=58bp_to_ENSMUST00000174785_5end | |||
|description=CAGE_peak_1_at_ENSMUST00000174785_5end | |||
|id=chr3:34095844..34095855,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.96e-18!33;CL:0000047!2.96e-18!33;CL:0000031!2.96e-18!33;CL:0000404!2.96e-18!33;CL:0000393!3.81e-14!39;CL:0000211!3.81e-14!39;CL:0002319!3.41e-13!43;CL:0000221!1.05e-12!44;CL:0000133!1.05e-12!44;CL:0000107!1.59e-12!9;CL:0000055!3.38e-10!50;CL:0000117!2.19e-09!23;CL:0000337!2.19e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,4.95e-35,9;CL:0000540,5.34e-15,33;CL:0000047,5.34e-15,33;CL:0000031,5.34e-15,33;CL:0000404,5.34e-15,33;CL:0000393,1.51e-12,39;CL:0000211,1.51e-12,39;CL:0002319,2.73e-11,43;CL:0000221,5.19e-11,44;CL:0000133,5.19e-11,44;CL:0002608,2.63e-09,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.48e-26!73;UBERON:0005743!2.48e-26!73;UBERON:0000073!3.23e-25!75;UBERON:0001016!3.23e-25!75;UBERON:0004121!2.76e-19!102;UBERON:0000924!2.76e-19!102;UBERON:0006601!2.76e-19!102;UBERON:0002346!4.19e-18!71;UBERON:0003075!4.19e-18!71;UBERON:0007284!4.19e-18!71;UBERON:0003056!1.13e-17!49;UBERON:0001049!5.33e-17!52;UBERON:0005068!5.33e-17!52;UBERON:0006241!5.33e-17!52;UBERON:0007135!5.33e-17!52;UBERON:0003080!1.42e-16!40;UBERON:0000955!1.37e-15!50;UBERON:0006238!1.37e-15!50;UBERON:0002780!1.44e-15!39;UBERON:0001890!1.44e-15!39;UBERON:0006240!1.44e-15!39;UBERON:0000033!3.56e-15!63;UBERON:0002020!5.43e-15!34;UBERON:0002616!6.73e-15!49;UBERON:0002410!1.59e-12!9;UBERON:0002791!9.58e-12!29;UBERON:0003528!9.58e-12!29;UBERON:0001893!9.58e-12!29;UBERON:0000010!9.94e-10!11;UBERON:0002619!2.47e-08!17;UBERON:0007811!2.83e-08!86;UBERON:0000956!4.58e-08!21;UBERON:0001869!4.58e-08!21;UBERON:0000203!4.58e-08!21;UBERON:0000153!9.49e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002410,4.95e-35,9;UBERON:0000010,1.36e-28,11;UBERON:0000011,1.22e-20,3;UBERON:0010313,4.63e-20,3;UBERON:0002342,4.63e-20,3;UBERON:0002005,4.63e-20,3;UBERON:0005428,4.63e-20,3;UBERON:0005062,4.63e-20,3;UBERON:0001017,1.24e-15,73;UBERON:0001016,3.51e-15,75;UBERON:0004121,1.10e-11,95;UBERON:0000924,1.10e-11,95;UBERON:0006601,1.10e-11,95;UBERON:0002346,1.23e-08,64;UBERON:0003075,1.23e-08,64;UBERON:0007284,1.23e-08,64;UBERON:0010371,1.99e-07,73;UBERON:0002259,2.74e-07,1;UBERON:0002314,2.74e-07,1;UBERON:0004061,2.74e-07,1;UBERON:0006777,2.74e-07,1;UBERON:0005882,2.74e-07,1;UBERON:0003080,5.85e-07,40 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,0,0,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.135005938331691,0,0.285650984403804,0.220868540951614,0.61245399607477,1.62937300731002,1.83843757322004,0,0.255374676170375,0.153606533256243,0.791317726381163,0.365950574409639,0.52091337055676,0,0,0.30559649555362,0.294628585473668,0.427115042397309,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04853447583376,0.915001205637253,1.00523481690292,0,0.255715457330331,0.62336413367868,0.973447578406546,0,0,0,0,0,0,0,0.60281927134286,0.272145996605311,0.2562274405697,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.308713837137853,0,0,0.213288250535234,0.696710015581316,0.644337306610467,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234423373184406,0,0,3.78609863299508,3.51394869866975,2.58508077279359,5.01834475700359,4.01037613348309,4.81230102341015,0.809621403349789,0.876767573733936,1.97643888973262,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26042765821917,0.517434735131018,1.07168517515796,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.324016022465404,0.627264888043406,0.218362563746178,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,1.14579102687879,0.343706364687375,0,0,0.675022500231806,0.45032120322422,0.453142408984205,0,0.103787347584177,0,0.512200817262403,0,0,0,0.44449345560323,0,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0,0.384150914429216,0.287177344778066,0,0.347652977834566,0.192909220463705,0,0,0,0.532427418478012,0.238436189947321,0.436039249896986,0.658765662907314,0.423073039458382,0.182927972872773,0,0.271608227691724,0,0,0,0.818462086339379,0.154936841185966,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p1@ENSMUST00000174785 | |||
}} |
Revision as of 02:08, 14 September 2013
Short description: | p1@ENSMUST00000174785 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000174785_5end |
Coexpression cluster: | MCL_coexpression_mm9:107 |
Association with transcript: | 58bp_to_ENSMUST00000174785_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 4.95e-35 | 9 |
neuron | 5.34e-15 | 33 |
neuronal stem cell | 5.34e-15 | 33 |
neuroblast | 5.34e-15 | 33 |
electrically signaling cell | 5.34e-15 | 33 |
electrically responsive cell | 1.51e-12 | 39 |
electrically active cell | 1.51e-12 | 39 |
neural cell | 2.73e-11 | 43 |
ectodermal cell | 5.19e-11 | 44 |
neurectodermal cell | 5.19e-11 | 44 |
hippocampal neuron | 2.63e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
autonomic nervous system | 4.95e-35 | 9 |
peripheral nervous system | 1.36e-28 | 11 |
parasympathetic nervous system | 1.22e-20 | 3 |
neural crest-derived structure | 4.63e-20 | 3 |
neural crest | 4.63e-20 | 3 |
enteric nervous system | 4.63e-20 | 3 |
vagal neural crest | 4.63e-20 | 3 |
neural fold | 4.63e-20 | 3 |
central nervous system | 1.24e-15 | 73 |
nervous system | 3.51e-15 | 75 |
ectoderm-derived structure | 1.10e-11 | 95 |
ectoderm | 1.10e-11 | 95 |
presumptive ectoderm | 1.10e-11 | 95 |
neurectoderm | 1.23e-08 | 64 |
neural plate | 1.23e-08 | 64 |
presumptive neural plate | 1.23e-08 | 64 |
ecto-epithelium | 1.99e-07 | 73 |
corpora quadrigemina | 2.74e-07 | 1 |
midbrain tectum | 2.74e-07 | 1 |
neural tube mantle layer | 2.74e-07 | 1 |
tectal plate | 2.74e-07 | 1 |
neural tube alar plate | 2.74e-07 | 1 |
anterior neural tube | 5.85e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.