FFCP PHASE1:Hg19::chr1:203463245..203463294,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26254 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8158 | |||
|TSSclassifier=not | |||
|UniProt=Q9UBM4 | |||
|association_with_transcript=0bp_to_ENST00000367222,NM_014359,uc001gzu.1_5end | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_1_at_OPTC_5end | |||
|id=chr1:203463245..203463294,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.71e-36!5;CL:0000064!4.51e-23!3;CL:0005012!4.51e-23!3;CL:0000067!4.51e-23!3;CL:0002304!4.51e-23!3;CL:0000147!6.74e-13!14;CL:0000710!8.63e-13!20;CL:0000075!1.33e-12!27;CL:0000342!8.15e-09!1;CL:0002565!8.15e-09!1;CL:0000133!2.91e-08!59;CL:0002077!1.54e-07!33;CL:0000148!4.37e-07!10;CL:0000541!4.37e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.21e-46;3!CL:0000067;1.21e-46;3!CL:0005012;1.21e-46;3!CL:0002304;1.21e-46;3!CL:0002322;1.33e-27;5!CL:0000075;3.67e-20;27!CL:0000710;4.24e-19;20!CL:0000147;1.40e-17;14!CL:0000342;1.04e-16;1!CL:0002565;1.04e-16;1!CL:0002077;1.05e-10;34!CL:0002321;1.20e-09;15!CL:0000148;5.94e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.21e-46,3;CL:0000067,1.21e-46,3;CL:0005012,1.21e-46,3;CL:0002304,1.21e-46,3;CL:0002322,1.01e-27,5;CL:0000075,3.55e-20,27;CL:0000710,4.08e-19,20;CL:0000147,1.47e-17,14;CL:0000342,1.04e-16,1;CL:0002565,1.04e-16,1;CL:0002077,2.86e-11,34;CL:0000133,9.23e-09,59;CL:0000221,3.59e-07,72;CL:0000148,5.76e-07,10;CL:0000541,5.76e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!4.02e-30!4;UBERON:0007625!7.39e-24!11;UBERON:0001778!4.51e-23!3;UBERON:0001775!4.51e-23!3;UBERON:0000970!8.90e-23!20;UBERON:0002104!1.22e-21!21;UBERON:0002203!3.61e-20!6;UBERON:0001768!3.61e-20!6;UBERON:0000020!1.16e-19!23;UBERON:0001032!8.53e-19!24;UBERON:0004456!8.53e-19!24;UBERON:0000019!2.00e-18!19;UBERON:0000047!2.00e-18!19;UBERON:0004088!2.00e-18!19;UBERON:0003072!2.00e-18!19;UBERON:0003071!2.00e-18!19;UBERON:0004128!2.00e-18!19;UBERON:0001456!1.36e-16!21;UBERON:0001801!3.24e-13!14;UBERON:0005085!8.75e-12!29;UBERON:0002200!4.45e-11!11;UBERON:0006876!4.45e-11!11;UBERON:0004177!2.20e-09!7;UBERON:0002506!8.15e-09!1;UBERON:0001769!8.15e-09!1;UBERON:0002370!7.99e-08!4;UBERON:0005058!7.99e-08!4;UBERON:0009113!7.99e-08!4;UBERON:0003295!7.99e-08!4;UBERON:0005562!7.99e-08!4;UBERON:0000063!4.03e-07!97;UBERON:0000966!7.49e-07!5;UBERON:0005388!7.49e-07!5;UBERON:0001802!7.49e-07!5;UBERON:0001444!8.84e-07!48;UBERON:0001048!9.85e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;1.66e-61;4!UBERON:0007625;9.76e-50;11!UBERON:0000970;1.80e-48;20!UBERON:0001778;1.21e-46;3!UBERON:0001775;1.21e-46;3!UBERON:0002104;3.81e-46;21!UBERON:0000020;4.24e-42;23!UBERON:0002203;3.34e-41;6!UBERON:0001768;3.34e-41;6!UBERON:0002200;3.34e-41;6!UBERON:0001032;2.50e-40;24!UBERON:0004456;2.50e-40;24!UBERON:0000019;4.19e-39;19!UBERON:0000047;4.19e-39;19!UBERON:0004088;4.19e-39;19!UBERON:0010230;4.19e-39;19!UBERON:0001456;2.33e-35;21!UBERON:0001801;1.66e-27;14!UBERON:0006876;1.07e-22;11!UBERON:0010371;1.16e-17;31!UBERON:0002506;1.04e-16;1!UBERON:0001769;1.04e-16;1!UBERON:0000966;2.85e-13;5!UBERON:0005388;2.85e-13;5!UBERON:0001802;2.85e-13;5!UBERON:0001444;3.13e-11;48!UBERON:0000033;4.10e-10;50!UBERON:0000153;1.50e-08;54!UBERON:0007811;5.41e-08;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,1.67e-61,4;UBERON:0007625,1.16e-49,11;UBERON:0001778,1.21e-46,3;UBERON:0001775,1.21e-46,3;UBERON:0000970,4.29e-46,21;UBERON:0002104,4.29e-46,21;UBERON:0002203,3.35e-41,6;UBERON:0001768,3.35e-41,6;UBERON:0002200,3.35e-41,6;UBERON:0000020,2.77e-40,24;UBERON:0001032,2.77e-40,24;UBERON:0004456,2.77e-40,24;UBERON:0000019,4.32e-37,20;UBERON:0000047,4.32e-37,20;UBERON:0010312,4.32e-37,20;UBERON:0004088,4.32e-37,20;UBERON:0010230,4.32e-37,20;UBERON:0003072,4.32e-37,20;UBERON:0004128,4.32e-37,20;UBERON:0003071,4.32e-37,20;UBERON:0001456,1.07e-33,22;UBERON:0001801,1.67e-27,14;UBERON:0005085,7.83e-24,31;UBERON:0006876,1.08e-22,11;UBERON:0002506,1.04e-16,1;UBERON:0001769,1.04e-16,1;UBERON:0001444,6.08e-15,49;UBERON:0000033,5.06e-13,56;UBERON:0000153,1.02e-11,62;UBERON:0007811,1.02e-11,62;UBERON:0003056,1.02e-11,61;UBERON:0000966,3.57e-11,6;UBERON:0005388,3.57e-11,6;UBERON:0001802,3.57e-11,6;UBERON:0003075,1.25e-08,82;UBERON:0007284,1.25e-08,82;UBERON:0002346,3.28e-08,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,86.2157532536299,14.8558696299918,7.72946114099509,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,1.59035721985782,1.51052125730374,1.55491582523056,0.756962552626885,3.6497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4656364282101,0,0,0,0,0,0,0,45.21285794028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30151357865721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,89.9403348306519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44677833618517,0.550157746388935,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1237.11602660957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.129177819672012,0.124149428591716,0,0.25458863311266,0,0,0,0,0.502055437748735,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@OPTC | |||
}} |
Revision as of 23:32, 10 January 2014
Short description: | p1@OPTC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_OPTC_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000367222, NM_014359, uc001gzu.1_5end |
EntrezGene: | OPTC |
HGNC: | 8158 |
UniProt: | Q9UBM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.21e-46 | 3 |
ciliated epithelial cell | 1.21e-46 | 3 |
multi-ciliated epithelial cell | 1.21e-46 | 3 |
non-pigmented ciliary epithelial cell | 1.21e-46 | 3 |
embryonic stem cell | 1.01e-27 | 5 |
columnar/cuboidal epithelial cell | 3.55e-20 | 27 |
neurecto-epithelial cell | 4.08e-19 | 20 |
pigment cell | 1.47e-17 | 14 |
pigment cell (sensu Vertebrata) | 1.04e-16 | 1 |
iris pigment epithelial cell | 1.04e-16 | 1 |
ecto-epithelial cell | 2.86e-11 | 34 |
neurectodermal cell | 9.23e-09 | 59 |
ectodermal cell | 3.59e-07 | 72 |
melanocyte | 5.76e-07 | 10 |
melanoblast | 5.76e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 1.67e-61 | 4 |
pigment epithelium of eye | 1.16e-49 | 11 |
ciliary epithelium | 1.21e-46 | 3 |
ciliary body | 1.21e-46 | 3 |
eye | 4.29e-46 | 21 |
visual system | 4.29e-46 | 21 |
vasculature of eye | 3.35e-41 | 6 |
uvea | 3.35e-41 | 6 |
vasculature of head | 3.35e-41 | 6 |
sense organ | 2.77e-40 | 24 |
sensory system | 2.77e-40 | 24 |
entire sense organ system | 2.77e-40 | 24 |
camera-type eye | 4.32e-37 | 20 |
simple eye | 4.32e-37 | 20 |
immature eye | 4.32e-37 | 20 |
ocular region | 4.32e-37 | 20 |
eyeball of camera-type eye | 4.32e-37 | 20 |
optic cup | 4.32e-37 | 20 |
optic vesicle | 4.32e-37 | 20 |
eye primordium | 4.32e-37 | 20 |
face | 1.07e-33 | 22 |
anterior segment of eyeball | 1.67e-27 | 14 |
ectodermal placode | 7.83e-24 | 31 |
vasculature of organ | 1.08e-22 | 11 |
iris epithelium | 1.04e-16 | 1 |
iris | 1.04e-16 | 1 |
subdivision of head | 6.08e-15 | 49 |
head | 5.06e-13 | 56 |
anterior region of body | 1.02e-11 | 62 |
craniocervical region | 1.02e-11 | 62 |
pre-chordal neural plate | 1.02e-11 | 61 |
retina | 3.57e-11 | 6 |
photoreceptor array | 3.57e-11 | 6 |
posterior segment of eyeball | 3.57e-11 | 6 |
neural plate | 1.25e-08 | 82 |
presumptive neural plate | 1.25e-08 | 82 |
neurectoderm | 3.28e-08 | 86 |