FFCP PHASE1:Hg19::chr10:105845674..105845722,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1308 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2194 | |||
|TSSclassifier=weak | |||
|UniProt=Q9UMD9 | |||
|association_with_transcript=-36bp_to_NM_000494,uc001kxr.2,uc009xxp.1,uc010qqv.1_5end | |||
|coexpression_cluster_id=C640 | |||
|description=CAGE_peak_3_at_COL17A1_5end | |||
|id=chr10:105845674..105845722,- | |||
|ontology_enrichment_celltype=CL:0000066!1.99e-28!254;CL:0002076!1.24e-25!43;CL:0000223!2.00e-20!59;CL:0002251!4.36e-13!21;CL:0002368!2.30e-10!13;CL:0002159!2.68e-07!13;CL:0000622!6.48e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.85e-19;42!CL:0002251;3.72e-16;20!CL:0002368;5.64e-14;13!CL:0002159;3.90e-09;14!CL:0000622;5.63e-09;5!CL:0000349;6.67e-09;19!CL:0002202;1.19e-08;9!CL:0002632;1.19e-08;9!CL:0000039;3.77e-08;7!CL:0000586;3.77e-08;7!CL:0000244;1.85e-07;4!CL:0000731;1.85e-07;4!CL:0000154;2.42e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,7.10e-26,42;CL:0000223,5.23e-20,58;CL:0000066,1.42e-19,253;CL:0002251,3.83e-16,20;CL:0002368,5.79e-14,13;CL:0002159,3.83e-09,14;CL:0000622,5.58e-09,5;CL:0000349,6.70e-09,19;CL:0002202,1.24e-08,9;CL:0002632,1.24e-08,9;CL:0000039,3.89e-08,7;CL:0000586,3.89e-08,7;CL:0000244,1.85e-07,4;CL:0000731,1.85e-07,4;CL:0000154,2.40e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;3.42e-11;58 | |||
|ontology_enrichment_disease=DOID:305!1.73e-22!106;DOID:0050687!1.23e-15!143;DOID:1749!7.67e-14!14;DOID:299!1.88e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.55e-18;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.47e-18,14;DOID:305,1.14e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.27e-28!169;UBERON:0000925!4.27e-28!169;UBERON:0006595!4.27e-28!169;UBERON:0001007!2.57e-20!155;UBERON:0001555!2.57e-20!155;UBERON:0007026!2.57e-20!155;UBERON:0001004!1.16e-18!72;UBERON:0004921!5.49e-18!129;UBERON:0004185!5.49e-18!129;UBERON:0000077!2.39e-17!130;UBERON:0000065!8.12e-13!53;UBERON:0001041!8.72e-12!98;UBERON:0005631!1.54e-11!14;UBERON:0000158!1.54e-11!14;UBERON:0004175!4.45e-11!25;UBERON:0000161!6.26e-11!35;UBERON:0000062!1.94e-10!511;UBERON:0000072!2.28e-10!46;UBERON:0005156!4.53e-10!59;UBERON:0000990!4.53e-10!59;UBERON:0000166!6.85e-10!21;UBERON:0003133!8.12e-10!48;UBERON:0003975!1.80e-09!22;UBERON:0005795!2.02e-09!22;UBERON:0000995!6.64e-09!21;UBERON:0008947!8.74e-09!38;UBERON:0003258!8.74e-09!38;UBERON:0003124!1.14e-08!7;UBERON:0000464!1.56e-08!104;UBERON:0003100!7.43e-08!41;UBERON:0000165!2.64e-07!28;UBERON:0000930!2.64e-07!28;UBERON:0001044!6.78e-07!6;UBERON:0003293!6.78e-07!6;UBERON:0003294!6.78e-07!6;UBERON:0010047!6.78e-07!6;UBERON:0000167!6.78e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.63e-15;33!UBERON:0001041;1.02e-12;14!UBERON:0000161;3.13e-12;19!UBERON:0000166;3.13e-12;19!UBERON:0001555;2.83e-11;54!UBERON:0000165;6.52e-11;28!UBERON:0005631;1.94e-10;10!UBERON:0000158;1.94e-10;10!UBERON:0000478;4.98e-09;24!UBERON:0001044;5.61e-09;6!UBERON:0003293;5.61e-09;6!UBERON:0003294;5.61e-09;6!UBERON:0010047;5.61e-09;6!UBERON:0003408;5.61e-09;6!UBERON:0000167;5.61e-09;6!UBERON:0005409;7.28e-09;22!UBERON:0000365;1.59e-08;5!UBERON:0004807;7.55e-08;22!UBERON:0000974;1.29e-07;6!UBERON:0000486;1.32e-07;12!UBERON:0001987;3.52e-07;4!UBERON:0005911;4.00e-07;36!UBERON:0007196;5.50e-07;15!UBERON:0001558;5.50e-07;15!UBERON:0005910;5.61e-07;6!UBERON:0001004;7.85e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.15e-27,160;UBERON:0000925,2.15e-27,160;UBERON:0006595,2.15e-27,160;UBERON:0001007,3.54e-18,145;UBERON:0001555,3.54e-18,145;UBERON:0007026,3.54e-18,145;UBERON:0005631,8.08e-16,14;UBERON:0000158,8.08e-16,14;UBERON:0001004,1.17e-15,74;UBERON:0004921,1.25e-15,118;UBERON:0000161,3.01e-13,36;UBERON:0000166,4.31e-13,22;UBERON:0003124,2.12e-11,7;UBERON:0000165,2.32e-10,29;UBERON:0000930,2.32e-10,29;UBERON:0001041,1.31e-09,87;UBERON:0000065,4.15e-09,54;UBERON:0000478,5.02e-09,24;UBERON:0001044,5.94e-09,6;UBERON:0003293,5.94e-09,6;UBERON:0003294,5.94e-09,6;UBERON:0010047,5.94e-09,6;UBERON:0000167,5.94e-09,6;UBERON:0000365,1.58e-08,5;UBERON:0000153,1.63e-08,62;UBERON:0007811,1.63e-08,62;UBERON:0003408,2.06e-08,10;UBERON:0003102,4.03e-08,99;UBERON:0004807,1.38e-07,28;UBERON:0005409,2.00e-07,25;UBERON:0000974,2.07e-07,10;UBERON:0005178,2.37e-07,34;UBERON:0002224,2.37e-07,34;UBERON:0001987,3.55e-07,4;UBERON:0004340,3.55e-07,4;UBERON:0005181,5.05e-07,35;UBERON:0007196,5.46e-07,15;UBERON:0001558,5.46e-07,15;UBERON:0005910,5.58e-07,6;UBERON:0000072,5.72e-07,47;UBERON:0000033,7.36e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,14.006834380586,1.39560233594486,135.215209348577,120.013975093946,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,6.50227717927519,4.59710612239464,6.6265302131215,28.1013047726759,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,1.21079900526674,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0,0.261958150995425,46.2655016131529,26.3256954376945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,68.0306721342354,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.8543450377605,54.5492241181669,44.7415168806846,0,0.132529768321485,0,0.518305275076852,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0.241011029883482,0.110293972732394,0.217879444092406,0.237270619111097,0.404493924480493,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0,48.7291267214298,10.1161577931858,8.94707854463515,108.698834616114,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,14.0600750980165,68.0327619205381,37.7121758664748,81.6773727049976,39.5262156378988,25.3032568249039,0,0,0,0.144119953416961,0,0.126995788584338,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,49.106666574294,76.5603021748287,91.6242588788931,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,54.1367469818869,37.2007195301021,0,0,0,0,0.15403067420883,0,0,0.316654886678627,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,5.97637867556789,0,0,49.961101805667,57.8553618972504,0,0,0,0,0,0,0,0,0,67.60153038264,66.4977633083267,68.2728011846025,50.0731015234972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59.3690435516409,14.0763477862515,11.9780083347455,5.17790904272285,69.7418703727392,60.6497312403452,83.364868864895,156.901082341353,0,0,0,0,0,0,0,0,0.106824071127473,0,33.3254693734203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.8436810465454,0,0.485442086998054,0,0,235.163317466625,225.396192751973,356.920735839308,0,0,0,0,237.304958735865,1.39473591775749,9.39365312805902,0,33.3395904957025,0,0,35.9473404589307,0,0,2.46608514092334,0,0,0,0,0,0.260427761085233,0,3.62499787717397,20.2552337948189,2.2882828526349,9.69189495248539,2.41320361269025,0,0,0,0,0,0,0,0,0.653630781113941,81.2840429144257,2.84715956464049,0,1.1528195219403,30.8766296769616,7.60531603454057,123.134447656521,29.8608154490071,139.122076540864,0,0,0,0,0,0,0,0,0,0.816164040795739,0.141353071433941,0,28.8625960012766,19.549121755238,78.2118585515041,0,0,0,0.067401132980677,0,0,0,18.7838034174806,0,0.394584402849391,9.67925728389311,0,0,0,0,0,0.330991955875499,0,0,0.284609546029793,0.277349346026277,0.520679215005393,24.0081373665225,33.3436761202942,2.09672001890436,0,0.0967563312890851,0.146178634172371,0.164230914106418,8.92298951693459,0,3.38971111170799,0,0,0,36.9592113368778,0.400794101257669,1.70762395791482,2.39771531498556,34.8698809512936,0,0,23.048767678104,0,84.6141584274295,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,25.3592330633719,0.429226048136571,0,0.201550417460179,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,1.5476039091159,0,19.1197771931582,0.236417121897595,0.104909176269996,0,0,102.674630565903,0,0,2.79695391420225,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,25.3733408034002,0.747511887973863,0,0,0,0,0,54.2590069104655,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,4.49929468663584,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,27.0479517899043,0,0,0,0,0,17.0652999417722,41.6791764222092,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,16.4888167081723,21.1165804792455,25.6800037930351,10.9749382842821,0.381382095467167,0,0,0,0.40341013740704,0,7.33338744547983,0,169.443074804734,0,0,0,0,0,8.22386650285773,2.97726707033577,0,22.3584248369292,0,0,0.606965604236632,1.13831095675649,42.0449234570908,0,0.171488009437418,0,0,0.118193840883968,0.556157009460346,6.27944742804112,0,11.2108865325516,10.0447459256045,0,0,0,0.158013611732727,0,0,0,149.817286689876,199.22846276864,150.694606275472,8.60454717640555,0,0,7.19757985324579,0.4582137370881,1.24082554265728,0.955538938977433,0.782988022584546,9.52057266067857,0.243835849964539,0,0,0,39.8283014308494,0.233939463462106,0,0.237840181555137,2.823652050974,0,0,48.851242082329,1.5299169235277,0,0.735444965261716,0,0,0,0,0,0,0.193373663920732,0,9.99902056191683,118.219782024757,8.42534350236267,14.6067277649303,5.04602211744995,0,0,0,0,10.0515099697926,0,0,0,0.126166424835079,0.437062287854782,0.126698501011437,7.54717340090665,5.61156551057677,18.0114003088296,1.25353769646188,0.454672189309436,0,0,0,2.55880778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| |||
|short_description=p3@COL17A1 | |||
}} |
Revision as of 04:51, 11 January 2014
Short description: | p3@COL17A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL17A1_5end |
Coexpression cluster: | C640_amniotic_salivary_chorionic_Keratinocyte_Urothelial_Prostate_Mammary |
Association with transcript: | -36bp_to_NM_000494, uc001kxr.2, uc009xxp.1, uc010qqv.1_5end |
EntrezGene: | COL17A1 |
HGNC: | 2194 |
UniProt: | Q9UMD9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 7.10e-26 | 42 |
endodermal cell | 5.23e-20 | 58 |
epithelial cell | 1.42e-19 | 253 |
epithelial cell of alimentary canal | 3.83e-16 | 20 |
respiratory epithelial cell | 5.79e-14 | 13 |
general ecto-epithelial cell | 3.83e-09 | 14 |
acinar cell | 5.58e-09 | 5 |
extraembryonic cell | 6.70e-09 | 19 |
epithelial cell of tracheobronchial tree | 1.24e-08 | 9 |
epithelial cell of lower respiratory tract | 1.24e-08 | 9 |
germ line cell | 3.89e-08 | 7 |
germ cell | 3.89e-08 | 7 |
transitional epithelial cell | 1.85e-07 | 4 |
urothelial cell | 1.85e-07 | 4 |
protein secreting cell | 2.40e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.47e-18 | 14 |
carcinoma | 1.14e-08 | 106 |