FFCP PHASE1:Hg19::chr12:69004707..69004718,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5908 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9857 | |||
|TSSclassifier=strong | |||
|UniProt=F5H147,F5H4H0,F5H823,F5GYH7,B4DW74,F5GX62,F5H0S2,B4DW94,F5GYB5 | |||
|association_with_transcript=0bp_to_ENST00000456697,ENST00000485252,ENST00000535492,ENST00000538877,ENST00000539091,ENST00000540781,ENST00000541386,ENST00000542145,ENST00000543697_5end | |||
|coexpression_cluster_id=C364 | |||
|description=CAGE_peak_2_at_RAP1B_5end | |||
|id=chr12:69004707..69004718,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.36e-41!42;CL:0000860!1.07e-37!45;CL:0000557!8.38e-31!71;CL:0000839!5.22e-30!70;CL:0000766!7.23e-30!76;CL:0000738!2.70e-28!140;CL:0000763!3.89e-28!112;CL:0000049!3.89e-28!112;CL:0002009!3.91e-28!65;CL:0002031!1.98e-26!124;CL:0002194!3.04e-26!63;CL:0000576!3.04e-26!63;CL:0000040!3.04e-26!63;CL:0000559!3.04e-26!63;CL:0000037!3.15e-26!172;CL:0000566!3.15e-26!172;CL:0002032!4.90e-26!165;CL:0000837!4.90e-26!165;CL:0000988!2.97e-23!182;CL:0002087!4.12e-20!119;CL:0000134!4.40e-11!358;CL:0000034!1.56e-10!444;CL:0002320!2.64e-10!365;CL:0000048!2.81e-10!430;CL:0000723!1.10e-09!436;CL:0000219!2.42e-09!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.21e-39;33!CL:0002057;1.21e-39;33!CL:0000473;7.83e-32;39!CL:0000234;7.83e-32;39!CL:0000576;2.17e-24;48!CL:0000766;1.52e-18;69!CL:0000763;7.42e-10;100!CL:0000738;6.28e-08;136!CL:0002087;6.77e-08;104!CL:0000453;2.45e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.64e-47,42;CL:0002057,7.64e-47,42;CL:0000473,3.74e-46,48;CL:0000234,3.74e-46,48;CL:0000557,6.89e-39,67;CL:0000839,5.87e-38,66;CL:0000766,1.10e-37,72;CL:0002009,7.87e-36,61;CL:0002194,1.39e-33,59;CL:0000576,1.39e-33,59;CL:0000040,1.39e-33,59;CL:0000559,1.39e-33,59;CL:0000763,2.19e-32,108;CL:0000049,2.19e-32,108;CL:0000738,4.73e-32,136;CL:0002031,1.08e-29,120;CL:0000037,7.22e-28,168;CL:0002032,1.61e-27,161;CL:0000837,1.61e-27,161;CL:0000988,3.57e-25,177;CL:0002087,1.36e-22,115;CL:0000134,3.32e-11,354;CL:0002320,1.76e-10,361;CL:0000034,1.98e-10,441;CL:0000048,5.15e-10,427;CL:0000723,1.76e-09,433;CL:0000219,4.39e-09,386;CL:0000453,2.43e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-33;42!CL:0000049;7.20e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.26e-27!80;UBERON:0001474!2.42e-25!86;UBERON:0004765!4.32e-22!101;UBERON:0001434!4.32e-22!101;UBERON:0002390!1.05e-18!102;UBERON:0003061!1.05e-18!102;UBERON:0002193!8.58e-18!112;UBERON:0002405!1.53e-17!115;UBERON:0002204!1.52e-11!167;UBERON:0002384!1.36e-09!375;UBERON:0001737!2.68e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.74e-08;9!UBERON:0001557;5.74e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.50e-35,76;UBERON:0001474,4.27e-31,82;UBERON:0004765,5.79e-31,90;UBERON:0002405,5.96e-29,93;UBERON:0001434,5.42e-26,100;UBERON:0002390,2.68e-24,98;UBERON:0003061,2.68e-24,98;UBERON:0002193,2.22e-22,108;UBERON:0002204,4.79e-14,167;UBERON:0002384,1.65e-09,371;UBERON:0003081,2.89e-08,203;UBERON:0001737,5.17e-08,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.03395087871065,4.21886169616784,8.76372108464848,3.90346239032406,0,0,0,0,0,0,0,0.0821005894499457,0,1.96682138424452,1.15148819429164,6.96672554922342,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,9.01469080433301,8.69114670484262,9.46077838632483,13.4808841405297,8.22335776043652,17.962969511916,10.3569261235974,9.47794614157672,16.3172738623124,13.4450815487281,8.39130088658974,6.77132432971709,6.77672422353377,10.643339852256,19.1014961778322,16.2224462956578,14.1208771913481,19.1801137739712,6.92687730392104,7.97854630486527,8.09827026012119,16.5419266018293,20.9932533135722,24.2900677108274,8.79370328398601,6.25779502104242,12.3797641481916,15.1349875658342,18.4138817993782,22.4688295083028,16.0554017597076,11.6932364980774,13.6278119580444,4.83013113929929,5.40636814229423,9.32208402843065,7.98035682475496,15.515500821529,16.6224379925817,0,1.63841583378639,0.889509253863555,1.70692089026603,2.00197993518006,0.574752439954483,0.661044872784862,1.90810750907073,0,0,0,2.64342657158052,4.48406850385229,2.89722493252585,0,0,0,2.84217042164153,6.51844533267181,4.73447805734733,7.79306913631645,5.79334375802903,3.82987679717288,3.54454231333794,5.1452734115353,3.97083091149593,4.29195846947598,3.12432018746985,3.31620021343018,3.76744011455568,5.04174314751005,8.82884732696053,2.09071047609954,5.66546713487831,4.21542542962113,5.15441168223945,6.57851199250707,1.59282707162048,6.51083453856419,1.90090408889675,3.46322773878877,4.8634912238679,2.49861453104692,1.89421801635213,5.74789597844733,0,0,0,0,0,4.73091478821062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28797964312051,1.48583000531826,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,7.75560528296651,0,0,0,3.04541115870403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37552664482532,0,0,0,5.01102776138317,0,0,0,0,0,0,0,0,0,0,1.51392510525377,0.72995471815166,0,0,0,0,0,1.30137480043828,2.86593973132773,4.33819853790268,1.98529150918309,2.61455332910887,2.13543557199987,1.34831308160164,3.53198637225623,3.46272441251751,0,0,0,0,0,0,0,0,0,3.25978839567199,0,0,0,0,0,0,0,2.20267769452646,4.81375646366869,0,2.77791307545966,3.23432058798817,0,0,0,0,0,2.81201501960331,9.07103492273841,7.79763034833126,0.0895585227028483,0,0,0,4.57851856868775,3.10992173311158,2.59415916150531,2.77733353538036,2.03193261734941,0,0,0,0,0.901029173531752,2.00078502841405,0,0,0,0,0,3.381211010224,0,0,0,0,0,0,0,0,0,0,0,0,2.61460037580088,0,12.162378064119,7.03159928004977,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0,0,0,3.95144636908534,3.56857977594324,3.31175071571263,3.04567678981054,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,3.37616341233737,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.92001666944023,3.66009631434861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.893288987462089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24715801637306,0,0,0,4.87598597493775,4.22470876356421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766021480529467,0,0.649243880549111,0,0,0,2.50634477090067,6.94096288986573,0,0,0,0,0,0,0,0.19538809540204,0,0,4.8682022125677,0,0,0,0,0,0,0,2.3874448473769,2.07875276582847,0,3.97659059106519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,3.05163472634166,0,0,0,0,0,0.0769502585037971,0,0,0,0,3.82801391678303,3.48070854927077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40168115483916,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,1.59045937961861,0,1.76828463311521,0.412618309791701,1.24632101408756,15.298224625502,5.41661368190565,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55139547633861,0,0,0,0,0,0,0,0,0,0,3.80812462358632,3.0082787282724,3.36980134439808,3.60659893780785,0,0.886068179966986,1.22026264901963,0,4.0138643698305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55924488638614,0,0,0,0,0,8.09645601894488,0,8.70883036465797,0,4.17396049449387,0,7.23529903120711,0,0,0,3.24823631914946,5.97143833047924,0,7.55470551402144,5.38799182025471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.40469173589676,5.84605297378798,7.36044274151299,0,0,0,0,0,0,0,0,2.09819261579167,3.11038630016486,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,0,0,0,0,0,0,0,2.85538840518309,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14280734351315,0,1.82089681270989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0.0852134047591577,0,0,4.34288939930048,0.955538938977433,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235676547101626,2.1593931382644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,1.65833887891756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@RAP1B | |||
}} |
Revision as of 14:31, 11 January 2014
Short description: | p2@RAP1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAP1B_5end |
Coexpression cluster: | C364_CD14_immature_CD14CD16_Aortic_CD4_Reticulocytes_Basophils |
Association with transcript: | 0bp_to_ENST00000456697, ENST00000485252, ENST00000535492, ENST00000538877, ENST00000539091, ENST00000540781, ENST00000541386, ENST00000542145, ENST00000543697_5end |
EntrezGene: | RAP1B |
HGNC: | 9857 |
UniProt: | F5H147F5H4H0F5H823F5GYH7B4DW74F5GX62F5H0S2B4DW94F5GYB5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.64e-47 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.64e-47 | 42 |
defensive cell | 3.74e-46 | 48 |
phagocyte | 3.74e-46 | 48 |
granulocyte monocyte progenitor cell | 6.89e-39 | 67 |
myeloid lineage restricted progenitor cell | 5.87e-38 | 66 |
myeloid leukocyte | 1.10e-37 | 72 |
macrophage dendritic cell progenitor | 7.87e-36 | 61 |
monopoietic cell | 1.39e-33 | 59 |
monocyte | 1.39e-33 | 59 |
monoblast | 1.39e-33 | 59 |
promonocyte | 1.39e-33 | 59 |
myeloid cell | 2.19e-32 | 108 |
common myeloid progenitor | 2.19e-32 | 108 |
leukocyte | 4.73e-32 | 136 |
hematopoietic lineage restricted progenitor cell | 1.08e-29 | 120 |
hematopoietic stem cell | 7.22e-28 | 168 |
hematopoietic oligopotent progenitor cell | 1.61e-27 | 161 |
hematopoietic multipotent progenitor cell | 1.61e-27 | 161 |
hematopoietic cell | 3.57e-25 | 177 |
nongranular leukocyte | 1.36e-22 | 115 |
mesenchymal cell | 3.32e-11 | 354 |
connective tissue cell | 1.76e-10 | 361 |
stem cell | 1.98e-10 | 441 |
multi fate stem cell | 5.15e-10 | 427 |
somatic stem cell | 1.76e-09 | 433 |
motile cell | 4.39e-09 | 386 |
Langerhans cell | 2.43e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.50e-35 | 76 |
bone element | 4.27e-31 | 82 |
skeletal element | 5.79e-31 | 90 |
immune system | 5.96e-29 | 93 |
skeletal system | 5.42e-26 | 100 |
hematopoietic system | 2.68e-24 | 98 |
blood island | 2.68e-24 | 98 |
hemolymphoid system | 2.22e-22 | 108 |
musculoskeletal system | 4.79e-14 | 167 |
connective tissue | 1.65e-09 | 371 |
lateral plate mesoderm | 2.89e-08 | 203 |
larynx | 5.17e-08 | 9 |