FFCP PHASE1:Hg19::chr17:7760779..7760896,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84316 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28212 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BRA0 | |||
|association_with_transcript=0bp_to_ENST00000335155,uc002giz.2_5end | |||
|description=CAGE_peak_2_at_LSMD1_5end | |||
|id=chr17:7760779..7760896,- | |||
|ontology_enrichment_celltype=CL:0000222!1.16e-27!119;CL:0000220!4.46e-22!246;CL:0002321!3.59e-21!248;CL:0000183!2.03e-15!59;CL:0000680!1.44e-14!57;CL:0000056!1.44e-14!57;CL:0000355!1.44e-14!57;CL:0000393!1.86e-14!60;CL:0000211!1.86e-14!60;CL:0000187!1.88e-14!54;CL:0000012!1.75e-13!682;CL:0000192!2.08e-13!42;CL:0000514!2.08e-13!42;CL:0000055!3.23e-13!180;CL:0000548!4.13e-13!679;CL:0000004!4.13e-13!679;CL:0000255!4.13e-13!679;CL:0000213!1.94e-12!57;CL:0000215!1.94e-12!57;CL:0000066!1.16e-11!254;CL:0002078!1.88e-11!44;CL:0000359!2.28e-11!32;CL:0000115!5.12e-10!35;CL:0002139!3.21e-09!24;CL:0000144!8.48e-09!625;CL:0000071!2.07e-08!18;CL:0002546!2.07e-08!18;CL:0000076!4.37e-08!62;CL:0002371!1.03e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.02e-10;32!CL:0002139;3.37e-09;24!CL:0000192;7.01e-09;43!CL:0000115;1.19e-08;36!CL:0000071;2.22e-08;18!CL:0000213;3.10e-08;58!CL:0000215;3.10e-08;58!CL:0002078;3.88e-08;45!CL:0000187;4.81e-08;55!CL:1000449;5.05e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.71e-27,121;CL:0002321,5.56e-21,250;CL:0000680,9.56e-14,58;CL:0000056,9.56e-14,58;CL:0000355,9.56e-14,58;CL:0000393,1.15e-13,61;CL:0000211,1.15e-13,61;CL:0000187,1.31e-13,55;CL:0000213,1.04e-12,58;CL:0000215,1.04e-12,58;CL:0000192,1.77e-12,43;CL:0000514,1.77e-12,43;CL:0000066,5.41e-12,253;CL:0002078,1.01e-11,45;CL:0000359,2.28e-11,32;CL:0000115,2.75e-10,36;CL:0002139,3.21e-09,24;CL:0000071,2.07e-08,18;CL:0002546,2.07e-08,18;CL:0000076,2.20e-08,63;CL:1000449,5.08e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;7.01e-09;43!CL:0002546;2.22e-08;18!CL:0000222;1.48e-07;121!CL:0000355;2.61e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!4.25e-17!118;UBERON:0002049!2.00e-16!79;UBERON:0007798!2.00e-16!79;UBERON:0000055!1.35e-15!69;UBERON:0002100!4.91e-15!216;UBERON:0005256!5.57e-15!143;UBERON:0000490!7.23e-15!138;UBERON:0004290!1.94e-14!70;UBERON:0000119!2.30e-14!312;UBERON:0000914!2.44e-14!83;UBERON:0002329!2.44e-14!83;UBERON:0003077!2.44e-14!83;UBERON:0003059!2.44e-14!83;UBERON:0007282!2.44e-14!83;UBERON:0009618!2.44e-14!83;UBERON:0007285!2.44e-14!83;UBERON:0001981!4.12e-14!60;UBERON:0007500!4.12e-14!60;UBERON:0004537!4.12e-14!60;UBERON:0006965!4.12e-14!60;UBERON:0000483!4.14e-14!309;UBERON:0004872!5.26e-14!84;UBERON:0003104!1.43e-13!238;UBERON:0009142!1.43e-13!238;UBERON:0001637!2.66e-13!42;UBERON:0003509!2.66e-13!42;UBERON:0004572!2.66e-13!42;UBERON:0000486!3.96e-13!82;UBERON:0001134!8.05e-13!61;UBERON:0002036!8.05e-13!61;UBERON:0003082!8.05e-13!61;UBERON:0002385!1.88e-11!63;UBERON:0001015!1.88e-11!63;UBERON:0000383!1.88e-11!63;UBERON:0000481!4.48e-11!347;UBERON:0000477!1.56e-10!286;UBERON:0001009!1.71e-10!113;UBERON:0004535!2.58e-10!110;UBERON:0000025!1.54e-09!194;UBERON:0004573!2.38e-09!33;UBERON:0004571!2.38e-09!33;UBERON:0000475!7.71e-09!365;UBERON:0000487!1.23e-08!22;UBERON:0001986!2.07e-08!18;UBERON:0004638!2.07e-08!18;UBERON:0004852!2.07e-08!18;UBERON:0006914!2.34e-08!25;UBERON:0004111!4.89e-08!241;UBERON:0009569!1.13e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;7.04e-10;74!UBERON:0001637;1.64e-09;42!UBERON:0003509;1.64e-09;42!UBERON:0004572;1.64e-09;42!UBERON:0007500;2.76e-09;56!UBERON:0001981;2.76e-09;56!UBERON:0004537;2.76e-09;56!UBERON:0000487;1.29e-08;22!UBERON:0004573;1.72e-08;33!UBERON:0004571;1.72e-08;33!UBERON:0004638;2.22e-08;18!UBERON:0001986;2.22e-08;18!UBERON:0004852;2.22e-08;18!UBERON:0006914;2.43e-08;25!UBERON:0000055;4.18e-08;65!UBERON:0002049;1.10e-07;75!UBERON:0007798;1.10e-07;75!UBERON:0006555;5.05e-07;15!UBERON:0004819;5.05e-07;15!UBERON:0001285;5.05e-07;15!UBERON:0007684;5.05e-07;15!UBERON:0000490;8.94e-07;33!UBERON:0000025;9.06e-07;93!UBERON:0000353;9.17e-07;15 | |||
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| |||
|short_description=p2@LSMD1 | |||
}} |
Revision as of 13:43, 20 January 2014
Short description: | p2@LSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LSMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000335155, uc002giz.2_5end |
EntrezGene: | LSMD1 |
HGNC: | 28212 |
UniProt: | Q9BRA0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.71e-27 | 121 |
embryonic cell | 5.56e-21 | 250 |
muscle precursor cell | 9.56e-14 | 58 |
myoblast | 9.56e-14 | 58 |
multi-potent skeletal muscle stem cell | 9.56e-14 | 58 |
electrically responsive cell | 1.15e-13 | 61 |
electrically active cell | 1.15e-13 | 61 |
muscle cell | 1.31e-13 | 55 |
lining cell | 1.04e-12 | 58 |
barrier cell | 1.04e-12 | 58 |
smooth muscle cell | 1.77e-12 | 43 |
smooth muscle myoblast | 1.77e-12 | 43 |
epithelial cell | 5.41e-12 | 253 |
meso-epithelial cell | 1.01e-11 | 45 |
vascular associated smooth muscle cell | 2.28e-11 | 32 |
endothelial cell | 2.75e-10 | 36 |
endothelial cell of vascular tree | 3.21e-09 | 24 |
blood vessel endothelial cell | 2.07e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.07e-08 | 18 |
squamous epithelial cell | 2.20e-08 | 63 |
epithelial cell of nephron | 5.08e-07 | 15 |