FFCP PHASE1:Hg19::chr17:50236110..50236119,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56934 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1369 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NS85 | |||
|association_with_transcript=12bp_to_ENST00000451037,NM_020178,uc002itw.3_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_22_at_CA10_5end | |||
|id=chr17:50236110..50236119,- | |||
|ontology_enrichment_celltype=CL:0002336!3.84e-07!1;CL:0002261!3.84e-07!1;CL:0002170!3.84e-07!1 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.20e-147;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.54e-51!57;UBERON:0005068!2.54e-51!57;UBERON:0006241!2.54e-51!57;UBERON:0007135!2.54e-51!57;UBERON:0002616!6.20e-45!59;UBERON:0005743!4.18e-42!86;UBERON:0000955!4.82e-41!69;UBERON:0006238!4.82e-41!69;UBERON:0001017!9.22e-41!82;UBERON:0003075!3.92e-39!86;UBERON:0007284!3.92e-39!86;UBERON:0000073!9.88e-38!94;UBERON:0001016!9.88e-38!94;UBERON:0002346!3.38e-37!90;UBERON:0007023!2.36e-36!115;UBERON:0003076!1.23e-32!15;UBERON:0003057!1.23e-32!15;UBERON:0004733!1.59e-32!12;UBERON:0002028!1.59e-32!12;UBERON:0007277!1.59e-32!12;UBERON:0004732!6.19e-30!13;UBERON:0000033!5.24e-28!123;UBERON:0000153!1.72e-26!129;UBERON:0007811!1.72e-26!129;UBERON:0002780!2.54e-25!41;UBERON:0001890!2.54e-25!41;UBERON:0006240!2.54e-25!41;UBERON:0002680!6.71e-25!9;UBERON:0001895!6.71e-25!9;UBERON:0010092!6.71e-25!9;UBERON:0003080!1.15e-24!42;UBERON:0004121!8.59e-21!169;UBERON:0000924!3.36e-20!173;UBERON:0006601!3.36e-20!173;UBERON:0002298!2.85e-19!8;UBERON:0000988!3.53e-19!3;UBERON:0003056!8.05e-19!61;UBERON:0001950!5.31e-17!20;UBERON:0002619!2.00e-15!22;UBERON:0002020!2.71e-15!34;UBERON:0003528!2.71e-15!34;UBERON:0001893!3.29e-15!34;UBERON:0003296!4.74e-15!4;UBERON:0010133!4.74e-15!4;UBERON:0001894!9.88e-15!7;UBERON:0006222!9.88e-15!7;UBERON:0001905!7.10e-14!2;UBERON:0002757!7.10e-14!2;UBERON:0010134!7.10e-14!2;UBERON:0002784!7.10e-14!2;UBERON:0005408!7.10e-14!2;UBERON:0001899!7.10e-14!2;UBERON:0000956!1.63e-13!25;UBERON:0000203!1.63e-13!25;UBERON:0000025!2.54e-13!194;UBERON:0001869!3.56e-13!32;UBERON:0002148!4.33e-13!2;UBERON:0009662!4.33e-13!2;UBERON:0002791!1.11e-12!33;UBERON:0002037!2.34e-10!6;UBERON:0006215!2.34e-10!6;UBERON:0004111!8.71e-10!241;UBERON:0000475!1.76e-09!365;UBERON:0001896!2.64e-09!3;UBERON:0005290!2.64e-09!3;UBERON:0010096!2.64e-09!3;UBERON:0006331!5.08e-09!3;UBERON:0000477!2.22e-08!286;UBERON:0000483!2.89e-08!309;UBERON:0000119!3.89e-08!312;UBERON:0007190!2.35e-07!1;UBERON:0003112!2.50e-07!1;UBERON:0000032!2.50e-07!1;UBERON:0005253!2.50e-07!1;UBERON:0003128!2.50e-07!1;UBERON:0002241!2.50e-07!1;UBERON:0001703!2.50e-07!1;UBERON:0004761!2.50e-07!1;UBERON:0009617!2.50e-07!1;UBERON:0002902!2.83e-07!1;UBERON:0009899!2.83e-07!1;UBERON:0000062!3.11e-07!511;UBERON:0002581!3.20e-07!1;UBERON:0006834!3.62e-07!1;UBERON:0002336!4.34e-07!1;UBERON:0001018!4.34e-07!1;UBERON:0002473!4.34e-07!1;UBERON:0005340!4.34e-07!1;UBERON:0002316!4.34e-07!1;UBERON:0003544!4.34e-07!1;UBERON:0001020!4.34e-07!1;UBERON:0005970!4.34e-07!1;UBERON:0002437!4.34e-07!1;UBERON:0002022!4.90e-07!1;UBERON:0000064!5.81e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0002680;1.37e-87;9!UBERON:0001895;1.37e-87;9!UBERON:0002037;2.92e-74;6!UBERON:0004733;5.11e-66;12!UBERON:0002028;5.11e-66;12!UBERON:0004732;4.89e-61;13!UBERON:0000988;1.03e-17;3!UBERON:0000073;5.12e-11;53!UBERON:0002616;5.12e-11;53!UBERON:0002298;1.50e-09;6!UBERON:0001016;1.26e-08;83!UBERON:0000955;5.95e-08;68!UBERON:0001017;8.54e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,1.37e-87,9;UBERON:0001895,1.37e-87,9;UBERON:0010092,1.37e-87,9;UBERON:0002037,2.58e-74,6;UBERON:0006215,2.58e-74,6;UBERON:0004733,5.11e-66,12;UBERON:0002028,5.11e-66,12;UBERON:0007277,5.11e-66,12;UBERON:0004732,4.89e-61,13;UBERON:0003076,4.60e-53,15;UBERON:0003057,4.60e-53,15;UBERON:0000988,1.12e-17,3;UBERON:0000073,1.70e-15,53;UBERON:0002616,1.70e-15,53;UBERON:0001049,9.92e-15,56;UBERON:0005068,9.92e-15,56;UBERON:0006241,9.92e-15,56;UBERON:0007135,9.92e-15,56;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0001017,2.17e-10,81;UBERON:0003075,2.17e-10,82;UBERON:0007284,2.17e-10,82;UBERON:0002346,5.98e-10,86;UBERON:0002298,1.57e-09,6;UBERON:0001016,1.88e-09,89;UBERON:0010371,2.22e-08,104;UBERON:0007023,8.86e-08,114;UBERON:0010314,8.99e-07,132 | |||
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|short_description=p22@CA10 | |||
}} |
Revision as of 16:21, 20 January 2014
Short description: | p22@CA10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_CA10_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 12bp_to_ENST00000451037, NM_020178, uc002itw.3_5end |
EntrezGene: | CA10 |
HGNC: | 1369 |
UniProt: | Q9NS85 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 1.37e-87 | 9 |
metencephalon | 1.37e-87 | 9 |
future metencephalon | 1.37e-87 | 9 |
cerebellum | 2.58e-74 | 6 |
rhombic lip | 2.58e-74 | 6 |
segmental subdivision of hindbrain | 5.11e-66 | 12 |
hindbrain | 5.11e-66 | 12 |
presumptive hindbrain | 5.11e-66 | 12 |
segmental subdivision of nervous system | 4.89e-61 | 13 |
posterior neural tube | 4.60e-53 | 15 |
chordal neural plate | 4.60e-53 | 15 |
pons | 1.12e-17 | 3 |
regional part of nervous system | 1.70e-15 | 53 |
regional part of brain | 1.70e-15 | 53 |
neural tube | 9.92e-15 | 56 |
neural rod | 9.92e-15 | 56 |
future spinal cord | 9.92e-15 | 56 |
neural keel | 9.92e-15 | 56 |
brain | 3.68e-12 | 68 |
future brain | 3.68e-12 | 68 |
central nervous system | 2.17e-10 | 81 |
neural plate | 2.17e-10 | 82 |
presumptive neural plate | 2.17e-10 | 82 |
neurectoderm | 5.98e-10 | 86 |
brainstem | 1.57e-09 | 6 |
nervous system | 1.88e-09 | 89 |
ecto-epithelium | 2.22e-08 | 104 |
adult organism | 8.86e-08 | 114 |
structure with developmental contribution from neural crest | 8.99e-07 | 132 |