FFCP PHASE1:Hg19::chr19:48342870..48342880,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1406 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2383 | |||
|TSSclassifier=weak | |||
|UniProt=A4GUB7 | |||
|association_with_transcript=38bp_to_EF432655_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_3_at_CRX_5end | |||
|id=chr19:48342870..48342880,+ | |||
|ontology_enrichment_celltype=CL:0002586!2.97e-07!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.71e-44;3 | |||
|ontology_enrichment_disease=DOID:3093!5.31e-07!11 | |||
|ontology_enrichment_disease_v019=DOID:5409;1.32e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.32e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!3.94e-37!2;UBERON:0002757!3.94e-37!2;UBERON:0010134!3.94e-37!2;UBERON:0002784!3.94e-37!2;UBERON:0005408!3.94e-37!2;UBERON:0001899!3.94e-37!2;UBERON:0000966!4.81e-33!5;UBERON:0005388!4.81e-33!5;UBERON:0001802!4.81e-33!5;UBERON:0003296!3.92e-19!4;UBERON:0010133!3.92e-19!4;UBERON:0000970!6.91e-15!20;UBERON:0002104!3.39e-14!21;UBERON:0000020!5.40e-13!23;UBERON:0001032!1.81e-12!24;UBERON:0004456!1.81e-12!24;UBERON:0001894!2.30e-11!7;UBERON:0006222!2.30e-11!7;UBERON:0000019!3.33e-09!19;UBERON:0000047!3.33e-09!19;UBERON:0004088!3.33e-09!19;UBERON:0003072!3.33e-09!19;UBERON:0003071!3.33e-09!19;UBERON:0004128!3.33e-09!19;UBERON:0001456!2.21e-08!21;UBERON:0003056!2.23e-07!61;UBERON:0001781!2.97e-07!3;UBERON:0001782!2.97e-07!3;UBERON:0005424!2.97e-07!3;UBERON:0005743!2.99e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.68e-66;2!UBERON:0002757;4.68e-66;2!UBERON:0010134;4.68e-66;2!UBERON:0005408;4.68e-66;2!UBERON:0001899;4.68e-66;2!UBERON:0003296;1.07e-33;4!UBERON:0010133;1.07e-33;4!UBERON:0002784;1.07e-33;4!UBERON:0000966;3.32e-27;5!UBERON:0005388;3.32e-27;5!UBERON:0001802;3.32e-27;5!UBERON:0001894;9.04e-20;7!UBERON:0000970;1.26e-15;20!UBERON:0002104;6.38e-15;21!UBERON:0000020;1.07e-13;23!UBERON:0001032;3.70e-13;24!UBERON:0004456;3.70e-13;24!UBERON:0000019;6.25e-08;19!UBERON:0000047;6.25e-08;19!UBERON:0004088;6.25e-08;19!UBERON:0010230;6.25e-08;19!UBERON:0001456;2.91e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.53e-66,2;UBERON:0002757,5.53e-66,2;UBERON:0010134,5.53e-66,2;UBERON:0005408,5.53e-66,2;UBERON:0001899,5.53e-66,2;UBERON:0003296,1.17e-33,4;UBERON:0010133,1.17e-33,4;UBERON:0002784,1.17e-33,4;UBERON:0000966,6.78e-23,6;UBERON:0005388,6.78e-23,6;UBERON:0001802,6.78e-23,6;UBERON:0001894,9.49e-20,7;UBERON:0006222,9.49e-20,7;UBERON:0000970,6.23e-15,21;UBERON:0002104,6.23e-15,21;UBERON:0000020,3.63e-13,24;UBERON:0001032,3.63e-13,24;UBERON:0004456,3.63e-13,24;UBERON:0003056,4.62e-09,61;UBERON:0000019,1.38e-07,20;UBERON:0000047,1.38e-07,20;UBERON:0010312,1.38e-07,20;UBERON:0004088,1.38e-07,20;UBERON:0010230,1.38e-07,20;UBERON:0003072,1.38e-07,20;UBERON:0004128,1.38e-07,20;UBERON:0003071,1.38e-07,20;UBERON:0001456,5.57e-07,22;UBERON:0003075,6.85e-07,82;UBERON:0007284,6.85e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55344148263544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.968440444553616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60710550763486,2.01770233331294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28657779517981,2.3702041759909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30875085165401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@CRX | |||
}} |
Revision as of 00:14, 21 January 2014
Short description: | p3@CRX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CRX_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 38bp_to_EF432655_5end |
EntrezGene: | CRX |
HGNC: | 2383 |
UniProt: | A4GUB7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 5.53e-66 | 2 |
regional part of epithalamus | 5.53e-66 | 2 |
secretory circumventricular organ | 5.53e-66 | 2 |
circumventricular organ | 5.53e-66 | 2 |
epithalamus | 5.53e-66 | 2 |
gland of diencephalon | 1.17e-33 | 4 |
neuroendocrine gland | 1.17e-33 | 4 |
regional part of diencephalon | 1.17e-33 | 4 |
retina | 6.78e-23 | 6 |
photoreceptor array | 6.78e-23 | 6 |
posterior segment of eyeball | 6.78e-23 | 6 |
diencephalon | 9.49e-20 | 7 |
future diencephalon | 9.49e-20 | 7 |
eye | 6.23e-15 | 21 |
visual system | 6.23e-15 | 21 |
sense organ | 3.63e-13 | 24 |
sensory system | 3.63e-13 | 24 |
entire sense organ system | 3.63e-13 | 24 |
pre-chordal neural plate | 4.62e-09 | 61 |
camera-type eye | 1.38e-07 | 20 |
simple eye | 1.38e-07 | 20 |
immature eye | 1.38e-07 | 20 |
ocular region | 1.38e-07 | 20 |
eyeball of camera-type eye | 1.38e-07 | 20 |
optic cup | 1.38e-07 | 20 |
optic vesicle | 1.38e-07 | 20 |
eye primordium | 1.38e-07 | 20 |
face | 5.57e-07 | 22 |
neural plate | 6.85e-07 | 82 |
presumptive neural plate | 6.85e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.32e-09 | 4 |