FFCP PHASE1:Hg19::chr19:54377736..54378002,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C482 | |||
|description=CAGE_peak_at_chr19:54377736..54378002,+ | |||
|id=chr19:54377736..54378002,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.03e-16!42;CL:0000860!4.33e-13!45;CL:0000048!6.02e-12!430;CL:0000766!1.94e-11!76;CL:0000723!7.98e-11!436;CL:0000034!2.23e-10!444;CL:0000557!1.89e-09!71;CL:0002009!3.89e-08!65;CL:0000144!7.54e-08!625;CL:0000192!8.61e-08!42;CL:0000514!8.61e-08!42;CL:0000839!9.93e-08!70;CL:0002194!1.19e-07!63;CL:0000576!1.19e-07!63;CL:0000040!1.19e-07!63;CL:0000559!1.19e-07!63;CL:0000183!1.72e-07!59;CL:0000222!2.44e-07!119;CL:0000134!3.20e-07!358;CL:0002320!3.93e-07!365;CL:0000359!4.19e-07!32;CL:0000763!6.13e-07!112;CL:0000049!6.13e-07!112;CL:0000187!6.41e-07!54;CL:0000055!7.31e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.28e-18;33!CL:0002057;9.28e-18;33!CL:0000473;1.11e-13;39!CL:0000234;1.11e-13;39!CL:0000766;6.89e-08;69!CL:0000576;1.18e-07;48!CL:0000359;6.40e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.02e-16,42;CL:0002057,3.02e-16,42;CL:0000473,2.37e-15,48;CL:0000234,2.37e-15,48;CL:0000766,6.15e-13,72;CL:0000048,9.25e-13,427;CL:0000723,1.38e-11,433;CL:0000034,4.05e-11,441;CL:0000557,8.19e-11,67;CL:0002009,1.97e-09,61;CL:0002194,6.49e-09,59;CL:0000576,6.49e-09,59;CL:0000040,6.49e-09,59;CL:0000559,6.49e-09,59;CL:0000839,6.74e-09,66;CL:0000134,8.50e-08,354;CL:0000192,8.58e-08,43;CL:0000514,8.58e-08,43;CL:0000763,9.98e-08,108;CL:0000049,9.98e-08,108;CL:0002320,1.06e-07,361;CL:0000222,1.45e-07,121;CL:0000359,4.19e-07,32;CL:0000187,6.07e-07,55 | |||
|ontology_enrichment_development_v019=CL:0002057;2.30e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!6.45e-17!216;UBERON:0000926!9.43e-14!448;UBERON:0004120!9.43e-14!448;UBERON:0006603!9.43e-14!448;UBERON:0002204!6.81e-13!167;UBERON:0001637!3.59e-09!42;UBERON:0003509!3.59e-09!42;UBERON:0004572!3.59e-09!42;UBERON:0001981!3.67e-09!60;UBERON:0007500!3.67e-09!60;UBERON:0004537!3.67e-09!60;UBERON:0006965!3.67e-09!60;UBERON:0003914!5.62e-09!118;UBERON:0002371!1.15e-08!80;UBERON:0001009!4.18e-08!113;UBERON:0004535!5.84e-08!110;UBERON:0004573!6.68e-08!33;UBERON:0004571!6.68e-08!33;UBERON:0001474!1.99e-07!86;UBERON:0002384!2.21e-07!375;UBERON:0000055!2.29e-07!69;UBERON:0004872!2.88e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.88e-07;33!UBERON:0004571;2.88e-07;33!UBERON:0001637;7.20e-07;42!UBERON:0003509;7.20e-07;42!UBERON:0004572;7.20e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.13e-24,315;UBERON:0004120,1.13e-24,315;UBERON:0006603,1.13e-24,315;UBERON:0003081,4.70e-18,203;UBERON:0002204,1.13e-13,167;UBERON:0002371,7.50e-10,76;UBERON:0001637,3.58e-09,42;UBERON:0003509,3.58e-09,42;UBERON:0004572,3.58e-09,42;UBERON:0003914,6.18e-09,117;UBERON:0007500,1.05e-08,59;UBERON:0001981,1.05e-08,59;UBERON:0004537,1.05e-08,59;UBERON:0006965,1.05e-08,59;UBERON:0001474,1.95e-08,82;UBERON:0002384,5.89e-08,371;UBERON:0004573,6.67e-08,33;UBERON:0004571,6.67e-08,33;UBERON:0007503,7.97e-08,78;UBERON:0001009,9.42e-08,112;UBERON:0004535,1.31e-07,109;UBERON:0002390,1.55e-07,98;UBERON:0003061,1.55e-07,98;UBERON:0005256,2.29e-07,122;UBERON:0001434,4.47e-07,100;UBERON:0004765,5.43e-07,90;UBERON:0000055,5.69e-07,68;UBERON:0004872,6.46e-07,83 | |||
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| |||
|short_description=p@chr19:54377736..54378002,+ | |||
}} |
Revision as of 00:59, 21 January 2014
Short description: | p@chr19:54377736..54378002, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54377736..54378002, + |
Coexpression cluster: | C482_CD14_Mast_Fibroblast_Smooth_Neutrophils_Basophils_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.02e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.02e-16 | 42 |
defensive cell | 2.37e-15 | 48 |
phagocyte | 2.37e-15 | 48 |
myeloid leukocyte | 6.15e-13 | 72 |
multi fate stem cell | 9.25e-13 | 427 |
somatic stem cell | 1.38e-11 | 433 |
stem cell | 4.05e-11 | 441 |
granulocyte monocyte progenitor cell | 8.19e-11 | 67 |
macrophage dendritic cell progenitor | 1.97e-09 | 61 |
monopoietic cell | 6.49e-09 | 59 |
monocyte | 6.49e-09 | 59 |
monoblast | 6.49e-09 | 59 |
promonocyte | 6.49e-09 | 59 |
myeloid lineage restricted progenitor cell | 6.74e-09 | 66 |
mesenchymal cell | 8.50e-08 | 354 |
smooth muscle cell | 8.58e-08 | 43 |
smooth muscle myoblast | 8.58e-08 | 43 |
myeloid cell | 9.98e-08 | 108 |
common myeloid progenitor | 9.98e-08 | 108 |
connective tissue cell | 1.06e-07 | 361 |
mesodermal cell | 1.45e-07 | 121 |
vascular associated smooth muscle cell | 4.19e-07 | 32 |
muscle cell | 6.07e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.13e-24 | 315 |
mesoderm-derived structure | 1.13e-24 | 315 |
presumptive mesoderm | 1.13e-24 | 315 |
lateral plate mesoderm | 4.70e-18 | 203 |
musculoskeletal system | 1.13e-13 | 167 |
bone marrow | 7.50e-10 | 76 |
artery | 3.58e-09 | 42 |
arterial blood vessel | 3.58e-09 | 42 |
arterial system | 3.58e-09 | 42 |
epithelial tube | 6.18e-09 | 117 |
epithelial tube open at both ends | 1.05e-08 | 59 |
blood vessel | 1.05e-08 | 59 |
blood vasculature | 1.05e-08 | 59 |
vascular cord | 1.05e-08 | 59 |
bone element | 1.95e-08 | 82 |
connective tissue | 5.89e-08 | 371 |
systemic artery | 6.67e-08 | 33 |
systemic arterial system | 6.67e-08 | 33 |
epithelial vesicle | 7.97e-08 | 78 |
circulatory system | 9.42e-08 | 112 |
cardiovascular system | 1.31e-07 | 109 |
hematopoietic system | 1.55e-07 | 98 |
blood island | 1.55e-07 | 98 |
trunk mesenchyme | 2.29e-07 | 122 |
skeletal system | 4.47e-07 | 100 |
skeletal element | 5.43e-07 | 90 |
vessel | 5.69e-07 | 68 |
splanchnic layer of lateral plate mesoderm | 6.46e-07 | 83 |