FFCP PHASE1:Hg19::chr21:34804479..34804505,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=3460 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5440 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-120bp_to_ENST00000421802_5end | |||
|coexpression_cluster_id=C143 | |||
|description=CAGE_peak_7_at_IFNGR2_5end | |||
|id=chr21:34804479..34804505,+ | |||
|ontology_enrichment_celltype=CL:0002194!3.51e-24!63;CL:0000576!3.51e-24!63;CL:0000040!3.51e-24!63;CL:0000559!3.51e-24!63;CL:0002057!5.79e-24!42;CL:0002009!1.48e-22!65;CL:0000860!2.63e-22!45;CL:0000766!2.41e-21!76;CL:0000839!3.27e-20!70;CL:0000557!1.55e-19!71;CL:0000763!1.83e-11!112;CL:0000049!1.83e-11!112;CL:0002087!3.01e-09!119;CL:0000738!2.82e-08!140;CL:0002031!1.76e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.53e-59;33!CL:0002057;3.53e-59;33!CL:0000473;4.19e-50;39!CL:0000234;4.19e-50;39!CL:0000576;6.09e-29;48!CL:0000766;3.36e-21;69!CL:0000763;2.87e-11;100!CL:0000775;6.15e-11;3!CL:0000738;7.60e-08;136!CL:0002087;1.15e-07;104!CL:0000094;6.67e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.28e-57,48;CL:0000234,1.28e-57,48;CL:0000860,1.19e-53,42;CL:0002057,1.19e-53,42;CL:0000766,2.62e-46,72;CL:0002194,1.81e-44,59;CL:0000576,1.81e-44,59;CL:0000040,1.81e-44,59;CL:0000559,1.81e-44,59;CL:0002009,8.97e-43,61;CL:0000839,5.60e-39,66;CL:0000557,2.75e-38,67;CL:0000763,5.09e-30,108;CL:0000049,5.09e-30,108;CL:0000738,1.52e-23,136;CL:0002087,1.15e-20,115;CL:0002031,1.75e-19,120;CL:0002032,1.66e-18,161;CL:0000837,1.66e-18,161;CL:0000037,2.28e-17,168;CL:0000988,4.90e-16,177;CL:0000775,3.91e-11,3;CL:0000134,3.88e-08,354;CL:0002320,8.67e-08,361;CL:0000094,6.39e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;4.81e-38;42!CL:0000049;4.44e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.74e-17!80;UBERON:0001474!2.30e-15!86;UBERON:0004765!6.87e-14!101;UBERON:0001434!6.87e-14!101;UBERON:0002390!1.30e-13!102;UBERON:0003061!1.30e-13!102;UBERON:0002405!1.69e-12!115;UBERON:0002193!4.34e-12!112;UBERON:0002204!8.10e-12!167;UBERON:0003081!3.76e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.16e-33,76;UBERON:0001474,6.45e-30,82;UBERON:0002390,1.08e-29,98;UBERON:0003061,1.08e-29,98;UBERON:0004765,1.38e-26,90;UBERON:0002193,3.53e-26,108;UBERON:0002405,1.74e-25,93;UBERON:0001434,4.96e-25,100;UBERON:0002204,2.37e-17,167;UBERON:0003081,7.86e-13,203;UBERON:0000926,6.18e-09,315;UBERON:0004120,6.18e-09,315;UBERON:0006603,6.18e-09,315;UBERON:0002384,2.58e-07,371 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0,0,1.20538905604795,0,1.46379839637152,0.123121058076788,0,0,0,0.136874425072884,0,0.152826811495903,0.164201178899891,0.393553906568396,0,1.15148819429164,0,0,0.6024118375565,0.739508020333575,0.154934401160603,0,0,0,0.601633342410425,0,0.223915474239924,0,0.257575567634187,2.90796477559129,0.377875943688809,2.42584061187816,3.25400651667958,0.411167888021826,1.54853185447552,2.01384674625505,1.2808035326455,1.89185783910868,2.75796544589295,2.5819387343353,1.35426486594342,4.89430082810772,1.09162460023138,3.37085226667627,9.79468455586888,3.85114832491312,2.55734850319616,0.329851300186716,0.997318288108159,1.27867425159808,6.67481248845743,2.8369261234557,3.73693349397345,1.25624332628372,1.5644487552606,1.73751075764093,7.87019353423379,3.31449872388808,5.69632297393592,0.845021145247767,0.850417199860174,0.838634582033504,0.673971786878971,0.901061357049038,0.32145117339416,1.42506371870624,0.99458338599545,0.730656615058536,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0,1.32171328579026,0,0.526768169550154,0,0,0,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24930726552346,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.472674085820339,0.221729397462564,0.175669571386252,0.0654895377488563,0,0.741568885568859,0.324547393654683,0.522389211897802,0.930705723632056,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0.709336764396714,0.560677600142307,0,0.49333509683432,0,0.538842688278752,0.326923806226917,0.151357427644931,0.576175924479999,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0.421352420106746,0,0.61417158655884,0.206651562351531,0,0.494533858557114,0,0,0,0.250237039743928,0,0,1.83892677479412,0.45071417671979,0.453728732640084,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0,0.276149695926898,0.323292113637624,0.355009592516614,0.10075209822764,0.169560592310488,0,0,0.286804595389004,0.121973706129595,0,0.580969714347592,0.207322110030741,0,0,0,1.28648187638577,0,0,0,0,0,0,0.220587945464788,0,0,0,0,0,0.738155454624648,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0.658501712451753,0,0.301586917234893,0.555530670951178,0.651616610620649,0,1.44331342025273,0,0,0.144366447761074,0,0.380508304469197,0,0,0.738651018262192,0.468008530278475,0.594524649154913,0.93733833986777,0,0.141775097242386,0,0.290633938513962,0,0,0.176096868026452,0,0.144119953416961,0,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0.600686115687835,0,0,0,0.1466765716419,0.387815147273333,0,0.845302752556,0,0,0.257207374262142,0,0.266422179016099,0.285955987316295,0,0,0,1.06617584622764,0.791951872933429,0.301439377059586,0,0.199945982364114,1.2162378064119,1.50677127429638,10.5416969741516,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0.128343036279748,0.254094624222463,0,0.773288812777695,0,0,2.24702107184155,2.99161459204025,1.65766205374414,0.49076596687656,0,0,0.831883446123229,0.713715955188647,0.157702415033935,0.468565659970853,0,0,0,0,0,0.521301686808497,0.195801157462741,0.343143423810856,0,0.215714200818617,0.213455115606889,0.303127571446259,0,0,0.496215615637554,0,0.561320188866147,0.384417447767103,0,0,0,0.308419387605311,0.710246901252508,0,0.519254429183621,0.348631135379878,0,0.802025881213139,0.552485933615378,0,0.364182336013434,0.393373244878272,0.451199612907412,0.231046011313244,0.784349769176855,0,0.527758144464379,0,0.170093705276516,0,0,0,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0.082509499920588,0,0.650060246036521,0,0.096670718292122,0.154048617114644,0,0,0.214840489736547,0.435050081742686,0.255679882248303,0,0.495854746082934,0.960950336825531,0,0.2023155617111,0.464845549297286,0,0,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0.95460974377781,0.78494864019923,0.179872457583315,0,0,0.202182481573316,0,0,0.48763373908959,0.974853958525138,0,0.272999822815972,0.565621727814851,0,0.551365343546124,1.32687795048244,0,0.578775534266688,0,0,0.30982349809975,0.563391205064483,0,0.0982490410131212,0.35667105148125,0.354761064070598,0.211107635297664,0.329294892959902,0,0.349934720244983,0.288666338176536,0.670302275535787,0,0.188287601553558,0,0,0.443430153536676,0.918893600827838,1.01489521846434,0,2.27858874869665,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0.0711418433484141,0,0,0.191505370132367,0.211673582723883,0,0.280797178113459,0.228234679033192,0,0,0,0,0.403599414382095,0,0.343505344755765,0.614481528616916,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0,0,0.71623345421307,0,0,0,0.140669416410513,0.667852230137435,0.1648038742267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| |||
|short_description=p7@IFNGR2 | |||
}} |
Revision as of 13:28, 21 January 2014
Short description: | p7@IFNGR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_7_at_IFNGR2_5end |
Coexpression cluster: | C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast |
Association with transcript: | -120bp_to_ENST00000421802_5end |
EntrezGene: | IFNGR2 |
HGNC: | 5440 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.28e-57 | 48 |
phagocyte | 1.28e-57 | 48 |
classical monocyte | 1.19e-53 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.19e-53 | 42 |
myeloid leukocyte | 2.62e-46 | 72 |
monopoietic cell | 1.81e-44 | 59 |
monocyte | 1.81e-44 | 59 |
monoblast | 1.81e-44 | 59 |
promonocyte | 1.81e-44 | 59 |
macrophage dendritic cell progenitor | 8.97e-43 | 61 |
myeloid lineage restricted progenitor cell | 5.60e-39 | 66 |
granulocyte monocyte progenitor cell | 2.75e-38 | 67 |
myeloid cell | 5.09e-30 | 108 |
common myeloid progenitor | 5.09e-30 | 108 |
leukocyte | 1.52e-23 | 136 |
nongranular leukocyte | 1.15e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 1.75e-19 | 120 |
hematopoietic oligopotent progenitor cell | 1.66e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.66e-18 | 161 |
hematopoietic stem cell | 2.28e-17 | 168 |
hematopoietic cell | 4.90e-16 | 177 |
neutrophil | 3.91e-11 | 3 |
mesenchymal cell | 3.88e-08 | 354 |
connective tissue cell | 8.67e-08 | 361 |
granulocyte | 6.39e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.16e-33 | 76 |
bone element | 6.45e-30 | 82 |
hematopoietic system | 1.08e-29 | 98 |
blood island | 1.08e-29 | 98 |
skeletal element | 1.38e-26 | 90 |
hemolymphoid system | 3.53e-26 | 108 |
immune system | 1.74e-25 | 93 |
skeletal system | 4.96e-25 | 100 |
musculoskeletal system | 2.37e-17 | 167 |
lateral plate mesoderm | 7.86e-13 | 203 |
mesoderm | 6.18e-09 | 315 |
mesoderm-derived structure | 6.18e-09 | 315 |
presumptive mesoderm | 6.18e-09 | 315 |
connective tissue | 2.58e-07 | 371 |