FFCP PHASE1:Hg19::chr3:38180117..38180192,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4615 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7562 | |||
|TSSclassifier=strong | |||
|UniProt=Q99836,E9PGG5,B4DQ72,B4DQ60 | |||
|association_with_transcript=0bp_to_ENST00000415158,ENST00000416282,ENST00000421516,ENST00000421571,ENST00000443433,ENST00000460295,ENST00000495303_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_MYD88_5end | |||
|id=chr3:38180117..38180192,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.98e-41!140;CL:0000037!2.69e-36!172;CL:0000566!2.69e-36!172;CL:0000988!4.79e-36!182;CL:0002087!1.15e-34!119;CL:0002032!9.93e-34!165;CL:0000837!9.93e-34!165;CL:0002031!2.24e-31!124;CL:0002371!2.45e-30!591;CL:0000766!5.91e-29!76;CL:0002057!6.27e-28!42;CL:0000144!7.79e-24!625;CL:0002194!1.77e-23!63;CL:0000576!1.77e-23!63;CL:0000040!1.77e-23!63;CL:0000559!1.77e-23!63;CL:0000557!2.74e-23!71;CL:0000860!3.66e-23!45;CL:0002009!1.11e-22!65;CL:0000763!1.61e-22!112;CL:0000049!1.61e-22!112;CL:0000839!3.92e-22!70;CL:0000003!6.29e-22!722;CL:0000723!4.21e-17!436;CL:0000063!9.89e-17!578;CL:0000048!1.32e-16!430;CL:0002320!4.19e-16!365;CL:0000034!4.40e-16!444;CL:0000012!4.71e-16!682;CL:0000134!8.03e-16!358;CL:0000548!1.38e-15!679;CL:0000004!1.38e-15!679;CL:0000255!1.38e-15!679;CL:0000219!2.06e-12!390;CL:0000542!2.96e-10!53;CL:0000051!2.96e-10!53;CL:0000838!4.40e-10!52;CL:0002393!5.26e-07!9;CL:0002397!5.26e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.33e-20;33!CL:0002057;2.33e-20;33!CL:0000473;1.05e-19;39!CL:0000234;1.05e-19;39!CL:0000576;4.29e-17;48!CL:0000766;5.12e-15;69!CL:0002087;1.72e-11;104!CL:0000738;6.36e-10;136!CL:0000763;7.44e-09;100!CL:0000988;8.57e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.27e-45,136;CL:0000037,2.37e-39,168;CL:0000988,8.31e-39,177;CL:0002087,2.06e-38,115;CL:0002032,1.01e-36,161;CL:0000837,1.01e-36,161;CL:0002031,8.53e-35,120;CL:0000766,1.82e-33,72;CL:0000473,4.59e-31,48;CL:0000234,4.59e-31,48;CL:0002194,6.07e-28,59;CL:0000576,6.07e-28,59;CL:0000040,6.07e-28,59;CL:0000559,6.07e-28,59;CL:0000860,6.27e-28,42;CL:0002057,6.27e-28,42;CL:0000557,2.27e-27,67;CL:0002009,5.99e-27,61;CL:0000839,4.07e-26,66;CL:0000763,1.82e-25,108;CL:0000049,1.82e-25,108;CL:0000723,8.67e-18,433;CL:0000048,2.76e-17,427;CL:0002320,4.17e-17,361;CL:0000134,8.03e-17,354;CL:0000034,9.63e-17,441;CL:0000219,2.99e-13,386;CL:0000542,2.96e-10,53;CL:0000051,2.96e-10,53;CL:0000838,4.40e-10,52;CL:0002393,5.26e-07,9;CL:0002397,5.26e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.22e-20;42!CL:0000049;1.23e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!9.60e-31!112;UBERON:0002390!1.32e-28!102;UBERON:0003061!1.32e-28!102;UBERON:0003081!3.45e-27!216;UBERON:0002405!9.03e-25!115;UBERON:0002371!2.00e-22!80;UBERON:0001474!4.03e-19!86;UBERON:0004765!6.60e-18!101;UBERON:0001434!6.60e-18!101;UBERON:0002384!3.28e-14!375;UBERON:0002204!8.11e-13!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.38e-34,108;UBERON:0002390,2.90e-32,98;UBERON:0003061,2.90e-32,98;UBERON:0002405,1.53e-29,93;UBERON:0003081,3.25e-27,203;UBERON:0002371,4.30e-26,76;UBERON:0004765,1.34e-22,90;UBERON:0001474,2.90e-22,82;UBERON:0001434,3.03e-20,100;UBERON:0002384,3.90e-15,371;UBERON:0002204,5.66e-14,167;UBERON:0000926,1.15e-11,315;UBERON:0004120,1.15e-11,315;UBERON:0006603,1.15e-11,315 | |||
|phase1_expression=25.0716163393368,19.6972481979704,24.526066312699,15.0109947529696,12.5149106439641,20.0637860543085,5.06599756336621,32.8494334181952,18.2829939739887,47.9181176177942,96.296561180195,67.0615012439629,75.1735887951093,29.332625651531,19.8838425436749,30.9269567367817,23.5050865929351,28.4820935251076,33.667363116545,34.5970173195774,36.5161237327213,27.8974702115498,26.9061827903193,32.4392387422736,28.1215512692358,43.861294899324,41.5428982616725,45.2586992553656,142.791232496152,72.5437562403732,142.585649574106,40.4545338770728,44.2772700604028,49.1772833521828,42.9168291214871,25.7326310802233,26.1304391008014,127.972939370864,162.641546898285,118.704946281571,50.380981703983,47.288475238771,53.3181425002766,216.788774020331,227.103442156974,218.325655069035,274.266263548708,226.964674188048,182.107346086321,423.483201498205,401.403827131101,365.601527407753,237.52977402753,236.892878875264,176.054432572644,278.410420183512,275.635211558424,195.284707982779,380.156194324661,302.31514350568,250.620153313224,375.70063091267,384.366468236885,390.421871487948,498.579471963907,288.231694143099,346.28917044154,363.054321295994,341.571311565232,302.109682984817,502.481587185696,346.917533100286,377.223165829534,330.825778364501,339.103858444244,268.782383541738,231.509308792926,242.23532815335,208.139634772719,307.528750496807,404.198688068551,345.417914768923,42.2390986707174,41.506534455922,39.1384071699964,40.1126409212517,33.633262911025,47.1297000762676,42.3068718582312,36.2540426723438,38.137268930333,44.6300263921913,38.2273228125229,22.4691258584344,34.1910223418737,38.9808445467114,27.145948275709,32.6198933081807,42.3539087938989,58.3480868913467,26.3997035973208,19.4113600351241,25.3274746930285,91.4679851027275,54.7966987903197,58.484948170076,55.5147920718282,76.4705178762281,74.2638874566905,47.5225544304624,48.6376031303093,52.1645554323094,30.2504588850603,25.6839194966125,34.4967228556423,76.8237343489499,42.1542542962113,40.2044111214677,38.9650325710034,47.1476813199663,48.180175585375,44.6712460890736,44.419660127943,39.163903013252,43.7257542933211,60.1414220191803,43.5197838368155,50.2000790629584,38.2439479970415,37.7991694134105,21.9426179682566,31.5229404060709,25.4446498068625,15.9033227049209,35.0936537445123,30.2729224628122,23.858578411533,20.9252994230133,26.9424228917593,21.7294809513313,28.6341401359591,27.1126686280265,79.0520775594817,55.9884508604488,26.612886279684,31.5174824511674,44.1420428922632,85.1411528770071,123.550900728508,62.7763177246965,38.9574318438742,37.8503221846695,26.3826781221772,34.4837844573646,33.1404554605826,30.5381026553475,38.0370839096995,22.2238412885623,24.547872125383,27.7818108594676,48.3395180530976,38.7738773916441,51.4970941426638,30.1483725883612,34.0259618110339,25.4504225609627,16.1661148290842,23.3105764600477,32.1964938678355,46.5140173188383,33.7091208831949,151.547480051473,244.301566413445,56.6922267785295,17.8909902610315,26.7190379612263,15.3594649743334,12.333974692199,28.3734705758686,28.0338800071154,30.9572087616144,28.1201005195562,30.4986814691771,19.9371794663138,21.9038950172035,28.757911252537,17.2852777344,28.821536115557,20.6025650708012,25.6712319695002,26.6018651382206,14.2095743358955,18.2916427135989,17.8372524511856,23.4777296943127,36.2361236069716,25.8314452939414,60.5881457213847,36.5955055332264,58.2503271640337,54.6149787780341,28.1121310303291,27.901429931448,30.4770527032601,18.4370600769952,23.5995602765245,24.6390416606819,21.325250434084,12.7366641339092,23.704870158861,14.8352330811693,8.40255069036326,15.251774327289,12.8820270022815,19.7283867711485,10.126579934476,15.3950468154694,11.6119536152293,22.8283748632902,27.3181836023792,10.6502877754984,15.9188315199672,28.8253006927829,58.9445602148055,58.6404159270295,54.4928731239107,11.7094757884412,13.5180363687915,12.548945829908,11.4027160516907,12.6160425437814,4.37972830890996,57.8863269620319,44.3836247353091,40.0591271922194,32.9701228902705,20.2126254867484,7.09840800239063,9.7779120245299,6.98931986662098,9.26469370952109,8.06153943141903,6.16903609688851,8.22470979777003,9.41863032601661,5.00171304030308,36.9077727312324,53.2918740453094,49.8004553710994,29.4017422771084,35.4914097501126,72.7292140341443,32.4934448674772,33.1097324560988,31.6080287055802,19.7302981843304,49.826629575516,34.8445435098621,31.5660973372521,34.442901598973,47.5680125753074,22.8785652761507,23.0930147240437,32.9242350129218,14.5586780852419,55.8698152835356,55.0952759966167,53.8419250823913,37.9298111020452,30.0470156733205,60.5693834974997,173.865168998454,125.444700971687,64.6763454508761,71.0564402281176,68.1938217735879,17.2847948816497,15.9848666182679,23.7697261082431,31.5304472253404,42.7034904964146,49.3440914987038,38.0476677020778,42.0387303309845,21.017803010708,41.6367383858523,62.1252470213249,44.4788359659034,15.9382613690151,27.9319043794843,40.3015270009115,41.6006322921288,29.645284680663,27.7218720403191,21.8469199630644,32.189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| |||
|short_description=p1@MYD88 | |||
}} |
Revision as of 18:15, 21 January 2014
Short description: | p1@MYD88 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MYD88_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000415158, ENST00000416282, ENST00000421516, ENST00000421571, ENST00000443433, ENST00000460295, ENST00000495303_5end |
EntrezGene: | MYD88 |
HGNC: | 7562 |
UniProt: | Q99836E9PGG5B4DQ72B4DQ60 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.38e-34 | 108 |
hematopoietic system | 2.90e-32 | 98 |
blood island | 2.90e-32 | 98 |
immune system | 1.53e-29 | 93 |
lateral plate mesoderm | 3.25e-27 | 203 |
bone marrow | 4.30e-26 | 76 |
skeletal element | 1.34e-22 | 90 |
bone element | 2.90e-22 | 82 |
skeletal system | 3.03e-20 | 100 |
connective tissue | 3.90e-15 | 371 |
musculoskeletal system | 5.66e-14 | 167 |
mesoderm | 1.15e-11 | 315 |
mesoderm-derived structure | 1.15e-11 | 315 |
presumptive mesoderm | 1.15e-11 | 315 |