FFCP PHASE1:Hg19::chr3:57094724..57094749,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=353324 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23221 | |||
|TSSclassifier=not | |||
|UniProt=Q7Z6I5 | |||
|association_with_transcript=255bp_to_ENST00000334325,NM_181727,uc003dij.1_5end | |||
|description=CAGE_peak_1_at_SPATA12_5end | |||
|id=chr3:57094724..57094749,+ | |||
|ontology_enrichment_celltype=CL:0000860!2.08e-21!45;CL:0002057!1.01e-19!42;CL:0002194!2.07e-19!63;CL:0000576!2.07e-19!63;CL:0000040!2.07e-19!63;CL:0000559!2.07e-19!63;CL:0000839!1.04e-18!70;CL:0002009!2.59e-18!65;CL:0000557!3.32e-18!71;CL:0000766!4.08e-18!76;CL:0000066!8.42e-15!254;CL:0000763!9.93e-08!112;CL:0000049!9.93e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.20e-42;39!CL:0000234;3.20e-42;39!CL:0000860;4.65e-42;33!CL:0002057;4.65e-42;33!CL:0000576;1.50e-18;48!CL:0000766;9.02e-13;69!CL:0000235;2.38e-10;6!CL:0000763;2.46e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.70e-43,48;CL:0000234,8.70e-43,48;CL:0000860,4.32e-34,42;CL:0002057,4.32e-34,42;CL:0002194,6.27e-33,59;CL:0000576,6.27e-33,59;CL:0000040,6.27e-33,59;CL:0000559,6.27e-33,59;CL:0002009,1.17e-31,61;CL:0000839,8.16e-29,66;CL:0000557,2.69e-28,67;CL:0000766,3.47e-28,72;CL:0000763,1.03e-16,108;CL:0000049,1.03e-16,108;CL:0002087,5.46e-14,115;CL:0002031,3.68e-13,120;CL:0000738,5.29e-12,136;CL:0000235,1.40e-10,6;CL:0002032,3.29e-09,161;CL:0000837,3.29e-09,161;CL:0000037,1.40e-08,168;CL:0000988,7.50e-08,177 | |||
|ontology_enrichment_development_v019=CL:0002057;4.44e-26;42!CL:0000049;5.30e-07;108 | |||
|ontology_enrichment_disease=DOID:305!2.50e-14!106;DOID:0050687!7.12e-11!143 | |||
|ontology_enrichment_disease_v019=DOID:1325;2.00e-08;7!DOID:3904;2.00e-08;7!DOID:3910;3.48e-08;2!DOID:0050615;7.29e-08;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,2.92e-08,2;DOID:1325,3.07e-08,7;DOID:3904,3.07e-08,7;DOID:0050615,9.29e-08,16 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.62e-14!80;UBERON:0001474!3.19e-12!86;UBERON:0002405!3.02e-11!115;UBERON:0002193!1.42e-10!112;UBERON:0002390!4.90e-09!102;UBERON:0003061!4.90e-09!102;UBERON:0000467!7.76e-09!625;UBERON:0004765!8.68e-09!101;UBERON:0001434!8.68e-09!101;UBERON:0000480!9.74e-09!626;UBERON:0000922!1.67e-08!612;UBERON:0000062!2.91e-08!511;UBERON:0000923!9.50e-08!604;UBERON:0005291!9.50e-08!604;UBERON:0006598!9.50e-08!604;UBERON:0002532!9.50e-08!604;UBERON:0002050!1.18e-07!605;UBERON:0005423!1.18e-07!605;UBERON:0000468!1.58e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;3.48e-08;2!UBERON:0002173;3.48e-08;2!UBERON:0002186;3.48e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.07e-24,76;UBERON:0002405,2.30e-22,93;UBERON:0001474,5.00e-22,82;UBERON:0004765,1.55e-19,90;UBERON:0002193,2.36e-18,108;UBERON:0002390,1.89e-17,98;UBERON:0003061,1.89e-17,98;UBERON:0001434,5.55e-17,100;UBERON:0004903,2.92e-08,2;UBERON:0002173,2.92e-08,2;UBERON:0002186,2.92e-08,2;UBERON:0002204,7.62e-08,167;UBERON:0003081,1.50e-07,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0.263766978228454,0.247532705920093,0,0,0,0,0,0.246242116153576,0,0,0.286235987131057,0.958120975510189,0.125542639594803,0,0,0,0,1.15148819429164,0.928896739896456,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.651032612147555,0.223915474239924,0,0.515151135268373,2.32637182047304,1.88937971844405,1.4555043671269,1.62700325833979,4.11167888021826,1.85823822537062,0,2.30544635876191,0.709446689665756,0.689491361473237,1.29096936716765,1.35426486594342,2.25890807451126,2.72906150057846,1.12361742222542,2.14258724659632,0.641858054152187,1.27867425159808,0.329851300186716,1.39624560335142,0,0.580418477257168,0.56738522469114,1.86846674698672,1.25624332628372,2.08593167368081,1.3031330682307,1.21079900526674,1.10483290796269,0.632924774881769,0.211255286311942,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,0.443458794925128,0.087834785693126,0.261958150995425,0,0.370784442784429,0,0.174129737299267,0.398873881556595,0,0,0,0.198762407366705,0,0.347140501607594,1.13061588384802,0,0,0,1.29208379584664,0.71153252537342,0,1.20848795132744,0,1.95249646038536,0.735326160691737,0,0.535798369704479,0.673588117878509,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0.506522046658319,0,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.609868530647977,0.132529768321485,0.580969714347592,0.518305275076852,0,0.72995471815166,0,0,0,0,0,0.473227200159376,0,0.482022059766964,0.110293972732394,0,0.474541238222193,0,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0.686271241194102,0.109750285408626,0,0,0.0925884451585296,0,0,0,1.15930404975077,0,0.577465791044295,1.85194205030644,0.761016608938393,0,0,1.23108503043699,2.80805118167085,1.93220510975347,0,0,0,0,0,0,0,0,0.414656231081544,0.288239906833923,0.25248486685276,0.126995788584338,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0,0.241718899183244,0.40101294060657,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0.447749509444357,0,0,0.769350375349168,0.984043937099117,0.650756789328606,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0,0,0,0,0,0,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,0.333926115068718,0,0,0,0,0,0.920418142519393,0,0,0.269605053441981,0.895105873378046,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,1.27126825146383,0,0,0,0,1.77148277162768,0,0,0,0,0,0.10893846351899,0.278847488557207,0,0.341826167541004,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0.210998064528027,0.489698424477443,0.282706142867882,0,0,0,0,0,0,0,0.269604531922708,0,0,0,2.15231080825299,0,0,0,0,0,0,0.103688191397247,0.664653872707185,0,0.313932918407225,0,0.284609546029793,0.277349346026277,0.520679215005393,0.195984794828755,0.261177619741208,0,0.171986032471617,0.290268993867255,0.438535902517113,0.410577285266046,0,0,0,0.959293472527256,0,0.0633107959558787,0,0.400794101257669,1.06726497369676,0,0.144090417154106,0,0,0.288109595976299,0.248505071130865,0.235694034616795,1.08723364858891,2.61507115780833,0.101998217636322,0.288950589901519,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0.202210631562555,0,0,0,0,0.321506296930038,0.275078873194468,0.415440338029185,0,0,0,0,0.0788057072991982,0,0,0,0.383830394638891,0,0,0,0.542999601753713,1.72844298240254,0.326587360109409,1.19730191562487,0,0,0,0,0,0.258565912723101,0,0.513260513652988,0.704815022316672,0,0,0,0,0,0,1.27668251554036,0,0,0,0,3.61224421375539,0,0.122026264901963,0,0,0.221858103073705,0.18628920882415,0,0.124980407962107,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0.400027764663154,0.686791410365586,0,0,0.770479321629213,0,0,0,0.231522474323834,0,0.71635536432595,0.308801447160972,0.438568099157414,0,0,0.337884881306145,0.76872455576384,0,0.303859956177382,0,0,0,0,0,1.2288645437686,0,0,0,0,0,0.368211900503681,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0,0.0691572524642179,0,0,0.981477185010256,0,0,0.115525666150338,0,0,0,0.150420656698515,0,0,0,0,0.443568258651136,0,0,0.206686796501184,0,0,0,0.496211178389294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| |||
|short_description=p1@SPATA12 | |||
}} |
Revision as of 19:21, 21 January 2014
Short description: | p1@SPATA12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPATA12_5end |
Coexpression cluster: | NA |
Association with transcript: | 255bp_to_ENST00000334325, NM_181727, uc003dij.1_5end |
EntrezGene: | SPATA12 |
HGNC: | 23221 |
UniProt: | Q7Z6I5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.70e-43 | 48 |
phagocyte | 8.70e-43 | 48 |
classical monocyte | 4.32e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.32e-34 | 42 |
monopoietic cell | 6.27e-33 | 59 |
monocyte | 6.27e-33 | 59 |
monoblast | 6.27e-33 | 59 |
promonocyte | 6.27e-33 | 59 |
macrophage dendritic cell progenitor | 1.17e-31 | 61 |
myeloid lineage restricted progenitor cell | 8.16e-29 | 66 |
granulocyte monocyte progenitor cell | 2.69e-28 | 67 |
myeloid leukocyte | 3.47e-28 | 72 |
myeloid cell | 1.03e-16 | 108 |
common myeloid progenitor | 1.03e-16 | 108 |
nongranular leukocyte | 5.46e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.68e-13 | 120 |
leukocyte | 5.29e-12 | 136 |
macrophage | 1.40e-10 | 6 |
hematopoietic oligopotent progenitor cell | 3.29e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.29e-09 | 161 |
hematopoietic stem cell | 1.40e-08 | 168 |
hematopoietic cell | 7.50e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.07e-24 | 76 |
immune system | 2.30e-22 | 93 |
bone element | 5.00e-22 | 82 |
skeletal element | 1.55e-19 | 90 |
hemolymphoid system | 2.36e-18 | 108 |
hematopoietic system | 1.89e-17 | 98 |
blood island | 1.89e-17 | 98 |
skeletal system | 5.55e-17 | 100 |
bronchoalveolar duct junction | 2.92e-08 | 2 |
alveolar duct | 2.92e-08 | 2 |
bronchiole | 2.92e-08 | 2 |
musculoskeletal system | 7.62e-08 | 167 |
lateral plate mesoderm | 1.50e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 2.92e-08 | 2 |
bronchus cancer | 3.07e-08 | 7 |
bronchogenic carcinoma | 3.07e-08 | 7 |
respiratory system cancer | 9.29e-08 | 16 |