FFCP PHASE1:Hg19::chr4:90757382..90757396,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6622 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11138 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-18bp_to_ENST00000508895_5end | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_13_at_SNCA_5end | |||
|id=chr4:90757382..90757396,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002566;5.71e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002566,6.31e-21,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.71e-21;1!UBERON:0003056;7.02e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.52e-19!115;UBERON:0001049!1.06e-13!57;UBERON:0005068!1.06e-13!57;UBERON:0006241!1.06e-13!57;UBERON:0007135!1.06e-13!57;UBERON:0002616!1.24e-11!59;UBERON:0000955!4.28e-11!69;UBERON:0006238!4.28e-11!69;UBERON:0003075!4.37e-11!86;UBERON:0007284!4.37e-11!86;UBERON:0005743!9.72e-11!86;UBERON:0001017!1.62e-10!82;UBERON:0002346!2.60e-10!90;UBERON:0000073!3.46e-10!94;UBERON:0001016!3.46e-10!94;UBERON:0001893!7.75e-10!34;UBERON:0001950!2.08e-09!20;UBERON:0000033!2.16e-09!123;UBERON:0002780!7.76e-09!41;UBERON:0001890!7.76e-09!41;UBERON:0006240!7.76e-09!41;UBERON:0002791!9.04e-09!33;UBERON:0000153!1.27e-08!129;UBERON:0007811!1.27e-08!129;UBERON:0003080!1.50e-08!42;UBERON:0002619!2.09e-08!22;UBERON:0004732!2.83e-08!13;UBERON:0000178!5.41e-08!15;UBERON:0000179!5.41e-08!15;UBERON:0000463!5.41e-08!15;UBERON:0001896!8.44e-08!3;UBERON:0005290!8.44e-08!3;UBERON:0010096!8.44e-08!3;UBERON:0001872!9.85e-08!5;UBERON:0001869!1.28e-07!32;UBERON:0002298!2.56e-07!8;UBERON:0000956!3.37e-07!25;UBERON:0000203!3.37e-07!25;UBERON:0002020!4.76e-07!34;UBERON:0003528!4.76e-07!34;UBERON:0003076!6.34e-07!15;UBERON:0003057!6.34e-07!15;UBERON:0004121!9.91e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.25e-47;15!UBERON:0000179;2.25e-47;15!UBERON:0000463;2.25e-47;15!UBERON:0002390;2.38e-22;32!UBERON:0000941;5.71e-21;1!UBERON:0001785;5.71e-21;1!UBERON:0002464;5.71e-21;1!UBERON:0004904;5.71e-21;1!UBERON:0001021;5.71e-21;1!UBERON:0002193;2.96e-15;42!UBERON:0003714;3.52e-11;2!UBERON:0005162;3.52e-11;2!UBERON:0000122;3.52e-11;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.64e-47,15;UBERON:0000179,2.64e-47,15;UBERON:0000463,2.64e-47,15;UBERON:0000941,4.22e-21,1;UBERON:0001785,4.22e-21,1;UBERON:0002464,4.22e-21,1;UBERON:0004904,4.22e-21,1;UBERON:0001021,4.22e-21,1;UBERON:0003902,4.22e-21,1;UBERON:0005425,4.22e-21,1;UBERON:0003714,3.02e-11,2;UBERON:0005162,3.02e-11,2;UBERON:0000122,3.02e-11,2;UBERON:0007023,2.70e-08,114;UBERON:0002390,3.90e-07,98;UBERON:0003061,3.90e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,1.14296209725904,0,0,0,0.205654985406647,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,3.82318603571188,1.13929437434833,0.714695326373367,0,2.59389324477087,1.62009431171434,3.17250070517708,0.213648142254946,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.337005664903385,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.253243183823515,0,0,0,0,0,2.97795150031381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.310482014706917,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,1.26035848110859,0,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.317079050969534,0.546974809018219,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.747667062745149,0.0657727735628491,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0.233939463462106,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.203974470572744,0.436350690340377,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |||
|short_description=p13@SNCA | |||
}} |
Revision as of 02:16, 22 January 2014
Short description: | p13@SNCA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SNCA_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | -18bp_to_ENST00000508895_5end |
EntrezGene: | SNCA |
HGNC: | 11138 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
dark melanocyte | 6.31e-21 | 1 |
Ontology term | p-value | n |
---|---|---|
blood | 2.64e-47 | 15 |
haemolymphatic fluid | 2.64e-47 | 15 |
organism substance | 2.64e-47 | 15 |
cranial nerve II | 4.22e-21 | 1 |
cranial nerve | 4.22e-21 | 1 |
nerve trunk | 4.22e-21 | 1 |
nerve connecting eye with brain | 4.22e-21 | 1 |
nerve | 4.22e-21 | 1 |
retinal neural layer | 4.22e-21 | 1 |
presumptive neural retina | 4.22e-21 | 1 |
neural tissue | 3.02e-11 | 2 |
multi cell component structure | 3.02e-11 | 2 |
neuron projection bundle | 3.02e-11 | 2 |
adult organism | 2.70e-08 | 114 |
hematopoietic system | 3.90e-07 | 98 |
blood island | 3.90e-07 | 98 |