FFCP PHASE1:Hg19::chr7:40883521..40883532,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1136 | |||
|description=CAGE_peak_at_chr7:40883521..40883532,+ | |||
|id=chr7:40883521..40883532,+ | |||
|ontology_enrichment_celltype=CL:0002159!7.45e-33!13;CL:0000244!6.81e-18!4;CL:0000731!6.81e-18!4;CL:0002077!6.29e-17!33;CL:0002076!8.66e-17!43;CL:0000066!1.21e-16!254;CL:0002251!1.71e-15!21;CL:0002621!7.52e-15!3;CL:0000622!9.86e-15!5;CL:0002166!1.55e-14!3;CL:0000362!6.75e-14!8;CL:0000223!2.90e-13!59;CL:0000154!2.73e-12!6;CL:0000240!6.84e-12!6;CL:0000311!6.84e-12!6;CL:0000079!6.84e-12!6;CL:0000237!6.84e-12!6;CL:0000036!6.84e-12!6;CL:0000357!6.84e-12!6;CL:0000114!6.84e-12!6;CL:0002327!1.91e-10!4;CL:0000317!2.02e-10!2;CL:1000448!2.02e-10!2;CL:0002308!2.02e-10!2;CL:0002140!2.02e-10!2;CL:0000221!3.73e-10!71;CL:0000575!7.39e-10!2;CL:0000312!2.03e-08!5;CL:0000150!3.32e-08!9;CL:0000220!3.65e-08!246;CL:0002321!4.78e-08!248;CL:0000076!1.50e-07!62;CL:0002623!9.83e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002159;1.34e-45;14!CL:0002621;5.41e-41;3!CL:0002166;5.00e-40;3!CL:0000317;8.70e-28;2!CL:1000448;8.70e-28;2!CL:0002308;8.70e-28;2!CL:0002140;8.70e-28;2!CL:0002077;8.43e-17;34!CL:0000244;5.37e-14;4!CL:0000731;5.37e-14;4!CL:0000362;6.45e-14;9!CL:0000622;1.00e-11;5!CL:0000154;6.35e-10;6!CL:0000575;5.55e-08;2!CL:0000150;6.69e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.39e-45,14;CL:0002621,5.06e-41,3;CL:0002166,4.38e-40,3;CL:0000317,8.13e-28,2;CL:1000448,8.13e-28,2;CL:0002308,8.13e-28,2;CL:0002140,8.13e-28,2;CL:0002077,1.53e-18,34;CL:0000244,4.12e-14,4;CL:0000731,4.12e-14,4;CL:0000362,6.74e-14,9;CL:0000622,9.77e-12,5;CL:0000154,6.21e-10,6;CL:0000066,1.02e-08,253;CL:0000221,3.14e-08,72;CL:0000575,5.74e-08,2;CL:0000150,6.60e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;8.17e-15;1!DOID:3149;8.17e-15;1!DOID:3451;4.68e-08;2!DOID:4159;4.68e-08;2!DOID:0060122;4.68e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,8.17e-15,1;DOID:3149,8.17e-15,1;DOID:3451,4.69e-08,2;DOID:4159,4.69e-08,2;DOID:0060122,4.69e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001949!7.52e-15!3;UBERON:0000365!2.44e-14!5;UBERON:0005910!5.76e-12!6;UBERON:0001708!5.16e-11!4;UBERON:0001704!5.16e-11!4;UBERON:0001911!1.91e-10!4;UBERON:0005333!1.91e-10!4;UBERON:0008425!1.91e-10!4;UBERON:0005311!1.91e-10!4;UBERON:0002419!2.02e-10!2;UBERON:0007771!2.02e-10!2;UBERON:0003297!2.02e-10!2;UBERON:0001821!2.02e-10!2;UBERON:0003487!2.02e-10!2;UBERON:0001820!2.02e-10!2;UBERON:0005089!2.02e-10!2;UBERON:0005088!2.02e-10!2;UBERON:0003102!1.36e-09!95;UBERON:0000166!1.78e-09!21;UBERON:0000165!6.71e-09!28;UBERON:0000930!6.71e-09!28;UBERON:0001444!7.42e-09!48;UBERON:0000076!9.38e-09!8;UBERON:0005085!1.75e-08!29;UBERON:0003729!3.12e-08!5;UBERON:0001003!8.36e-08!14;UBERON:0007376!8.36e-08!14;UBERON:0007383!8.36e-08!14;UBERON:0002090!1.80e-07!6;UBERON:0001004!2.47e-07!72;UBERON:0004119!3.63e-07!169;UBERON:0000925!3.63e-07!169;UBERON:0006595!3.63e-07!169;UBERON:0004121!4.03e-07!169;UBERON:0000161!6.63e-07!35;UBERON:0000924!7.47e-07!173;UBERON:0006601!7.47e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;5.41e-41;3!UBERON:0001708;3.17e-30;4!UBERON:0008895;3.17e-30;4!UBERON:0002419;8.70e-28;2!UBERON:0007771;8.70e-28;2!UBERON:0003297;8.70e-28;2!UBERON:0001821;8.70e-28;2!UBERON:0003487;8.70e-28;2!UBERON:0001820;8.70e-28;2!UBERON:0000486;1.18e-27;12!UBERON:0011159;2.47e-24;5!UBERON:0003929;5.40e-18;7!UBERON:0003350;7.94e-16;8!UBERON:0001828;7.94e-16;8!UBERON:0010371;2.52e-15;31!UBERON:0011137;2.03e-11;11!UBERON:0010323;2.03e-11;11!UBERON:0000365;2.17e-11;5!UBERON:0003729;5.75e-10;13!UBERON:0005910;1.21e-09;6!UBERON:0001003;1.41e-08;15!UBERON:0007376;1.41e-08;15!UBERON:0005911;2.27e-08;36!UBERON:0000075;5.06e-08;16!UBERON:0000161;5.57e-07;19!UBERON:0000166;5.57e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,5.06e-41,3;UBERON:0001708,2.87e-30,4;UBERON:0008895,2.87e-30,4;UBERON:0002419,8.13e-28,2;UBERON:0007771,8.13e-28,2;UBERON:0003297,8.13e-28,2;UBERON:0001821,8.13e-28,2;UBERON:0003487,8.13e-28,2;UBERON:0001820,8.13e-28,2;UBERON:0005089,8.13e-28,2;UBERON:0005088,8.13e-28,2;UBERON:0011159,2.28e-24,5;UBERON:0010188,1.99e-20,6;UBERON:0002539,1.99e-20,6;UBERON:0008816,1.99e-20,6;UBERON:0003102,5.32e-18,99;UBERON:0003350,7.74e-16,8;UBERON:0001828,7.74e-16,8;UBERON:0000365,1.76e-11,5;UBERON:0010323,1.96e-11,11;UBERON:0000033,3.78e-11,56;UBERON:0000153,5.14e-10,62;UBERON:0007811,5.14e-10,62;UBERON:0003729,5.66e-10,13;UBERON:0005910,1.01e-09,6;UBERON:0011137,4.19e-09,14;UBERON:0001003,1.44e-08,15;UBERON:0007376,1.44e-08,15;UBERON:0007383,1.44e-08,15;UBERON:0000075,4.94e-08,16;UBERON:0010371,2.42e-07,104;UBERON:0008814,3.39e-07,18;UBERON:0005085,4.16e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50347753918506,2.72746120590835,4.30206893083506,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,1.1240175325762,0.201057944823262,0.648119116109707,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,4.68669169933885,1.34385702559088,1.13420077793909,1.07470227243418,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,4.55042172225565,0,0,0,0,0,0,0,0,0,0.661139661443912,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,1.72202149068492,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0.51215543128185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:40883521..40883532,+ | |||
}} |
Revision as of 16:42, 22 January 2014
Short description: | p@chr7:40883521..40883532, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:40883521..40883532, + |
Coexpression cluster: | C1136_Gingival_Mallassezderived_Keratinocyte_Sebocyte_Prostate_keratoacanthoma_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.39e-45 | 14 |
gingival epithelial cell | 5.06e-41 | 3 |
epithelial cell of Malassez | 4.38e-40 | 3 |
sebum secreting cell | 8.13e-28 | 2 |
epithelial cell of sweat gland | 8.13e-28 | 2 |
epithelial cell of skin gland | 8.13e-28 | 2 |
acinar cell of sebaceous gland | 8.13e-28 | 2 |
ecto-epithelial cell | 1.53e-18 | 34 |
transitional epithelial cell | 4.12e-14 | 4 |
urothelial cell | 4.12e-14 | 4 |
epidermal cell | 6.74e-14 | 9 |
acinar cell | 9.77e-12 | 5 |
protein secreting cell | 6.21e-10 | 6 |
epithelial cell | 1.02e-08 | 253 |
ectodermal cell | 3.14e-08 | 72 |
corneal epithelial cell | 5.74e-08 | 2 |
glandular epithelial cell | 6.60e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 5.06e-41 | 3 |
jaw skeleton | 2.87e-30 | 4 |
splanchnocranium | 2.87e-30 | 4 |
skin gland | 8.13e-28 | 2 |
epidermis gland | 8.13e-28 | 2 |
gland of integumental system | 8.13e-28 | 2 |
sebaceous gland | 8.13e-28 | 2 |
skin sebaceous gland | 8.13e-28 | 2 |
sweat gland | 8.13e-28 | 2 |
sweat gland placode | 8.13e-28 | 2 |
sebaceous gland placode | 8.13e-28 | 2 |
primary subdivision of cranial skeletal system | 2.28e-24 | 5 |
protuberance | 1.99e-20 | 6 |
pharyngeal arch | 1.99e-20 | 6 |
embryonic head | 1.99e-20 | 6 |
surface structure | 5.32e-18 | 99 |
epithelium of mucosa | 7.74e-16 | 8 |
gingiva | 7.74e-16 | 8 |
urothelium | 1.76e-11 | 5 |
cranial skeletal system | 1.96e-11 | 11 |
head | 3.78e-11 | 56 |
anterior region of body | 5.14e-10 | 62 |
craniocervical region | 5.14e-10 | 62 |
mouth mucosa | 5.66e-10 | 13 |
transitional epithelium | 1.01e-09 | 6 |
axial skeletal system | 4.19e-09 | 14 |
skin epidermis | 1.44e-08 | 15 |
outer epithelium | 1.44e-08 | 15 |
enveloping layer of ectoderm | 1.44e-08 | 15 |
subdivision of skeletal system | 4.94e-08 | 16 |
ecto-epithelium | 2.42e-07 | 104 |
pharyngeal arch system | 3.39e-07 | 18 |
ectodermal placode | 4.16e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 8.17e-15 | 1 |
keratoacanthoma | 8.17e-15 | 1 |
skin carcinoma | 4.69e-08 | 2 |
skin cancer | 4.69e-08 | 2 |
integumentary system cancer | 4.69e-08 | 2 |