FFCP PHASE1:Hg19::chr8:145086460..145086478,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=375686 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30510 | |||
|TSSclassifier=strong | |||
|UniProt=Q76KD6,B4DWW9 | |||
|association_with_transcript=-103bp_to_ENST00000377470,NM_001134374,NM_198572,uc011lkw.1,uc011lkx.1_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_3_at_SPATC1_5end | |||
|id=chr8:145086460..145086478,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.64e-50!42;CL:0000860!1.28e-46!45;CL:0002009!2.80e-39!65;CL:0002194!4.54e-38!63;CL:0000576!4.54e-38!63;CL:0000040!4.54e-38!63;CL:0000559!4.54e-38!63;CL:0000763!1.16e-35!112;CL:0000049!1.16e-35!112;CL:0000557!2.84e-35!71;CL:0000766!7.14e-35!76;CL:0000839!1.79e-33!70;CL:0000988!1.68e-30!182;CL:0000738!1.36e-29!140;CL:0002032!5.49e-28!165;CL:0000837!5.49e-28!165;CL:0000037!7.09e-28!172;CL:0000566!7.09e-28!172;CL:0002087!2.33e-25!119;CL:0002031!6.46e-24!124;CL:0002393!1.59e-11!9;CL:0002397!1.59e-11!9;CL:0000453!1.48e-10!5;CL:0002619!1.86e-09!3;CL:0000080!3.67e-09!6;CL:0000134!8.39e-09!358;CL:0002320!2.03e-08!365;CL:0000219!4.45e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.82e-20;33!CL:0002057;4.82e-20;33!CL:0000453;2.76e-18;5!CL:0000473;1.99e-14;39!CL:0000234;1.99e-14;39!CL:0000990;2.02e-10;8!CL:0000576;2.50e-09;48!CL:0000451;1.27e-08;10!CL:0000766;4.15e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,1.88e-18,5;CL:0000860,6.41e-18,42;CL:0002057,6.41e-18,42;CL:0000988,1.15e-17,177;CL:0000763,1.03e-15,108;CL:0000049,1.03e-15,108;CL:0000473,1.55e-15,48;CL:0000234,1.55e-15,48;CL:0000738,5.44e-14,136;CL:0002032,2.83e-13,161;CL:0000837,2.83e-13,161;CL:0000037,1.27e-12,168;CL:0000766,3.37e-12,72;CL:0002194,3.40e-12,59;CL:0000576,3.40e-12,59;CL:0000040,3.40e-12,59;CL:0000559,3.40e-12,59;CL:0002009,9.18e-12,61;CL:0000839,8.50e-11,66;CL:0000557,1.28e-10,67;CL:0000990,1.63e-10,8;CL:0000451,1.07e-08,10;CL:0002087,1.09e-08,115;CL:0002031,2.92e-08,120 | |||
|ontology_enrichment_development_v019=CL:0002057;4.46e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.98e-35!102;UBERON:0003061!1.98e-35!102;UBERON:0002193!3.46e-33!112;UBERON:0002371!2.21e-30!80;UBERON:0001474!1.09e-27!86;UBERON:0002405!3.02e-26!115;UBERON:0004765!2.36e-22!101;UBERON:0001434!2.36e-22!101;UBERON:0003081!1.40e-11!216;UBERON:0002204!2.26e-10!167;UBERON:0002384!6.74e-08!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;6.48e-10;10!UBERON:0000178;9.16e-07;15!UBERON:0000179;9.16e-07;15!UBERON:0000463;9.16e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.71e-13,98;UBERON:0003061,9.71e-13,98;UBERON:0002193,2.12e-11,108;UBERON:0002331,6.48e-10,10;UBERON:0000358,6.48e-10,10;UBERON:0000307,6.48e-10,10;UBERON:0000091,6.48e-10,10;UBERON:0000087,6.48e-10,10;UBERON:0007010,6.48e-10,10;UBERON:0007806,6.48e-10,10;UBERON:0008780,6.48e-10,10;UBERON:0005728,6.48e-10,10;UBERON:0002371,3.07e-09,76;UBERON:0001474,1.75e-08,82;UBERON:0004765,1.24e-07,90;UBERON:0002405,2.38e-07,93;UBERON:0000178,9.16e-07,15;UBERON:0000179,9.16e-07,15;UBERON:0000463,9.16e-07,15;UBERON:0001434,9.32e-07,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.868043482863407,0.223915474239924,0.32389366601898,0.257575567634187,0.145398238779565,0,0,0.697287110717054,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,1.41889337933151,1.37898272294647,0,2.70852973188684,0,0.545812300115692,1.12361742222542,0,0.962787081228281,0.639337125799041,0,0.199463657621632,0,1.16083695451434,1.70215567407342,4.9825779919646,0.502497330513487,0,0.217188844705117,0,1.47311054395026,2.53169909952708,0,0.212604299965044,0.209658645508376,0,0,0.16072558669708,0.285012743741249,0,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0.635020748171649,0,0,0,0,2.50634477090067,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41302821701555,5.43681331364613,7.20511451587642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55888247071511,1.32864840313363,1.96278473107013,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@SPATC1 | |||
}} |
Revision as of 00:24, 23 January 2014
Short description: | p3@SPATC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPATC1_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -103bp_to_ENST00000377470, NM_001134374, NM_198572, uc011lkw.1, uc011lkx.1_5end |
EntrezGene: | SPATC1 |
HGNC: | 30510 |
UniProt: | Q76KD6B4DWW9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 1.88e-18 | 5 |
classical monocyte | 6.41e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.41e-18 | 42 |
hematopoietic cell | 1.15e-17 | 177 |
myeloid cell | 1.03e-15 | 108 |
common myeloid progenitor | 1.03e-15 | 108 |
defensive cell | 1.55e-15 | 48 |
phagocyte | 1.55e-15 | 48 |
leukocyte | 5.44e-14 | 136 |
hematopoietic oligopotent progenitor cell | 2.83e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.83e-13 | 161 |
hematopoietic stem cell | 1.27e-12 | 168 |
myeloid leukocyte | 3.37e-12 | 72 |
monopoietic cell | 3.40e-12 | 59 |
monocyte | 3.40e-12 | 59 |
monoblast | 3.40e-12 | 59 |
promonocyte | 3.40e-12 | 59 |
macrophage dendritic cell progenitor | 9.18e-12 | 61 |
myeloid lineage restricted progenitor cell | 8.50e-11 | 66 |
granulocyte monocyte progenitor cell | 1.28e-10 | 67 |
conventional dendritic cell | 1.63e-10 | 8 |
dendritic cell | 1.07e-08 | 10 |
nongranular leukocyte | 1.09e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 2.92e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.71e-13 | 98 |
blood island | 9.71e-13 | 98 |
hemolymphoid system | 2.12e-11 | 108 |
umbilical cord | 6.48e-10 | 10 |
blastocyst | 6.48e-10 | 10 |
blastula | 6.48e-10 | 10 |
bilaminar disc | 6.48e-10 | 10 |
inner cell mass | 6.48e-10 | 10 |
cleaving embryo | 6.48e-10 | 10 |
connecting stalk | 6.48e-10 | 10 |
inner cell mass derived epiblast | 6.48e-10 | 10 |
extraembryonic mesoderm | 6.48e-10 | 10 |
bone marrow | 3.07e-09 | 76 |
bone element | 1.75e-08 | 82 |
skeletal element | 1.24e-07 | 90 |
immune system | 2.38e-07 | 93 |
blood | 9.16e-07 | 15 |
haemolymphatic fluid | 9.16e-07 | 15 |
organism substance | 9.16e-07 | 15 |
skeletal system | 9.32e-07 | 100 |