FFCP PHASE1:Hg19::chr9:120466551..120466562,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7099 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11850 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-47bp_to_ENST00000394487_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_7_at_TLR4_5end | |||
|id=chr9:120466551..120466562,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.96e-22!42;CL:0000860!2.04e-21!45;CL:0000766!3.05e-19!76;CL:0000839!1.68e-15!70;CL:0002194!2.76e-14!63;CL:0000576!2.76e-14!63;CL:0000040!2.76e-14!63;CL:0000559!2.76e-14!63;CL:0000557!7.12e-14!71;CL:0002009!3.36e-13!65;CL:0000763!3.99e-12!112;CL:0000049!3.99e-12!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.82e-34;33!CL:0002057;6.82e-34;33!CL:0000473;1.07e-22;39!CL:0000234;1.07e-22;39!CL:0000576;8.16e-17;48!CL:0000766;1.23e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.26e-32,42;CL:0002057,3.26e-32,42;CL:0000473,1.25e-26,48;CL:0000234,1.25e-26,48;CL:0000766,1.24e-22,72;CL:0002194,6.44e-19,59;CL:0000576,6.44e-19,59;CL:0000040,6.44e-19,59;CL:0000559,6.44e-19,59;CL:0000839,5.88e-18,66;CL:0002009,6.17e-18,61;CL:0000557,1.62e-17,67;CL:0000763,1.40e-15,108;CL:0000049,1.40e-15,108;CL:0000048,6.64e-07,427;CL:0000738,8.24e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;3.82e-24;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.21e-19!112;UBERON:0003081!1.20e-17!216;UBERON:0002390!4.61e-17!102;UBERON:0003061!4.61e-17!102;UBERON:0004535!7.00e-14!110;UBERON:0001009!7.04e-14!113;UBERON:0002371!7.62e-14!80;UBERON:0002405!1.16e-12!115;UBERON:0001474!2.13e-12!86;UBERON:0004765!8.07e-09!101;UBERON:0001434!8.07e-09!101;UBERON:0002049!1.76e-08!79;UBERON:0007798!1.76e-08!79;UBERON:0002204!3.92e-08!167;UBERON:0000926!6.53e-08!448;UBERON:0004120!6.53e-08!448;UBERON:0006603!6.53e-08!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.13e-08;6!UBERON:0002358;2.13e-08;6!UBERON:0003684;2.13e-08;6!UBERON:0001178;2.13e-08;6!UBERON:0000178;4.26e-07;15!UBERON:0000179;4.26e-07;15!UBERON:0000463;4.26e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.64e-23,108;UBERON:0002390,1.10e-21,98;UBERON:0003061,1.10e-21,98;UBERON:0003081,7.24e-19,203;UBERON:0002405,7.61e-18,93;UBERON:0002371,2.31e-16,76;UBERON:0001474,2.64e-14,82;UBERON:0004765,5.07e-12,90;UBERON:0000926,1.16e-11,315;UBERON:0004120,1.16e-11,315;UBERON:0006603,1.16e-11,315;UBERON:0001009,9.31e-11,112;UBERON:0004535,1.15e-10,109;UBERON:0001434,9.82e-10,100;UBERON:0002204,5.07e-09,167;UBERON:0003688,2.78e-08,6;UBERON:0002358,2.78e-08,6;UBERON:0003684,2.78e-08,6;UBERON:0001178,2.78e-08,6;UBERON:0000178,4.41e-07,15;UBERON:0000179,4.41e-07,15;UBERON:0000463,4.41e-07,15 | |||
|phase1_expression=4.90531624030503,1.92690471501885,4.65149533516705,2.00146596706261,3.12872766099101,6.10636966870258,0,0.631719873426831,0,0,0,0,0,0.247532705920093,0,0,1.20538905604795,0,0.487932798790507,0,0,0,0.286235987131057,0.273748850145768,0.251085279189606,0,0,0,0.393364276848904,0.767658796194425,0.464448369948228,0,0,0,0,0,0.293600439334847,1.10799081706375,1.20326668482085,1.73608696572681,0.223915474239924,0,0.77272670290256,3.19876125315042,1.88937971844405,4.60909716256851,6.0431549595478,1.6446715520873,5.57471467611186,5.75384784644301,3.58624989140741,8.27687804610048,9.65287906062532,5.16387746867061,6.77132432971709,3.9530891303947,3.0019676506363,6.51698104890745,3.67300670845083,8.98601275813062,11.5080682643827,5.93732340336089,3.39088217956774,3.40979800426155,16.5419266018293,17.5889419654253,31.1411124497787,7.78870862295904,5.73631210262222,8.47036494349955,12.7133895553007,22.833213431229,26.2663781575934,0.211255286311942,0.637812899895131,0,0.673971786878971,0.750884464207532,1.12507910687956,0.570025487482497,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,1.68152568894461,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602300476311091,0,1.24930726552346,0.236777252044017,0,0,0,0,0,2.01210257911091,0.383587685530591,0,0,0,0,0,0.283604451492204,0.886917589850256,1.22968699970376,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,1.59009925893364,0,1.04142150482278,0,0.419499436209906,2.75118041940067,0.208994966536811,3.35941786920128,4.26919515224052,2.67776490211736,0.805658634218294,0,0.488124115096339,0.735326160691737,0.81014194788176,1.96459402224975,0.898117490504679,1.68917220724983,1.53316637465883,0,0.732806975721629,22.4026709641308,42.6558290563158,0,1.49091585508596,3.41902381494365,0.662045904066094,1.43418310374407,0.709336764396714,0,0,0.74000264525148,0.311211035399766,0.808264032418128,1.14423332179421,0.605429710579726,2.88087962239999,0,0.936480230490962,0.570471821544449,0.298897361103602,0,0,0,0.204154171254893,0,0.413303124703062,0,0,0,0,0,0,0,0,0,0.300476117813194,1.24775401476023,0.179389635688862,0,0.211931901159562,0.300091096084402,0.206105058476878,0.772921620136887,0,0.168776332241266,0.0974370051611986,0.252433774244115,0.184099797284599,0.484938170456436,0,0,0.169560592310488,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,1.39310378409594,2.88751792667834,0,0.168584690078102,0,0.220587945464788,0.217879444092406,0.237270619111097,0.269662616320329,0.196221465125346,0,0.738155454624648,0,0,0,0,0,1.18157981336281,0,0,1.3725424823882,0,0,0,0,0,0,2.88662684050547,0.231860809950154,1.87853910777315,1.01056513432752,1.85194205030644,0.951270761172991,0,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0,0,1.07470227243418,0,1.53353071666084,1.47798971368783,1.67292024625129,0.621984346622316,0.432359860250884,0.25248486685276,0,0,0,0,0,0,0.857479297891735,1.56983518083505,3.48768055066624,2.3468251462704,0.258543431515556,0,0,0.797814349754612,2.08014873822732,0.257207374262142,2.83698264046557,0.266422179016099,0.142977993658148,0,0.823240336780769,0.325736184293735,0,0,1.80863626235752,5.22920075160176,0.099972991182057,0,0.502257091432126,0,3.59437283237374,1.14861935834114,1.42636905040718,3.18518874668674,2.67119219315498,1.25342674267927,0,0,0,0.256686072559497,0.254094624222463,0,0,0,0,40.4463792931478,29.9161459204025,81.2254406334629,0.36807447515742,0,0.542530047399471,2.07970861530807,1.60586089917446,0.946214490203608,1.40569697991256,0,0,0,0,0.553107505625109,0,0,0.343143423810856,0.413536052245775,0.215714200818617,0.320182673410333,0,0,0,1.73675465473144,1.53461973288062,1.96462066103151,3.20347873139252,3.58195074346692,2.41280881715411,0,0.154209693802656,0,0.246381468041427,1.03850885836724,0.697262270759755,0,0.200506470303285,0,0.229628896329213,0.364182336013434,0,0,0.308061348417659,0,0,0.211103257785751,0,0.850468526382578,2.15915916102139,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0.328014645699706,0.325378394664303,1.75169719801128,0,0.330037999682352,0,0,0,0.193341436584244,0,0.460511024178389,0,0.107420244868274,0,0.170453254832202,0,0,0,1.27612712494584,0,0,0,0,1.23213432070436,1.59691809095107,0,0.55597265731176,3.43499728180779,1.116475108079,1.89827654831236,1.33441135746677,0,0,0.636406495851874,0,0,0,0.235624804691373,1.61745985258653,0,0.842516912477962,0,4.38684281336312,0,0.272999822815972,0.141405431953713,1.13008116620243,0,2.65375590096488,3.5076070820301,0,0,0.202910376962704,0,0.281695602532241,0,0,0,0,0.633322905892992,0,0.75894634753143,0,0,0,0,1.03558180854457,0,0,0,1.37834040124176,8.11916174771471,8.41100927856613,11.9625909306574,7.86164859010704,10.6954191002411,9.72709966789076,9.18053443304795,5.55187623405989,0,0,0,0,0.144269212976445,0,0,0,0,0,0.649243880549111,2.24637742490767,0.228234679033192,1.25343916618419,2.50634477090067,0,0.481764225311099,0,0,1.37402137902306,0,0,0,1.36771666781428,0,0,0,0,2.81974010175699,0,0.879049075631364,0,0,0,0,0,0,0.994147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| |||
|short_description=p7@TLR4 | |||
}} |
Revision as of 03:02, 23 January 2014
Short description: | p7@TLR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_TLR4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -47bp_to_ENST00000394487_5end |
EntrezGene: | TLR4 |
HGNC: | 11850 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.26e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.26e-32 | 42 |
defensive cell | 1.25e-26 | 48 |
phagocyte | 1.25e-26 | 48 |
myeloid leukocyte | 1.24e-22 | 72 |
monopoietic cell | 6.44e-19 | 59 |
monocyte | 6.44e-19 | 59 |
monoblast | 6.44e-19 | 59 |
promonocyte | 6.44e-19 | 59 |
myeloid lineage restricted progenitor cell | 5.88e-18 | 66 |
macrophage dendritic cell progenitor | 6.17e-18 | 61 |
granulocyte monocyte progenitor cell | 1.62e-17 | 67 |
myeloid cell | 1.40e-15 | 108 |
common myeloid progenitor | 1.40e-15 | 108 |
multi fate stem cell | 6.64e-07 | 427 |
leukocyte | 8.24e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.64e-23 | 108 |
hematopoietic system | 1.10e-21 | 98 |
blood island | 1.10e-21 | 98 |
lateral plate mesoderm | 7.24e-19 | 203 |
immune system | 7.61e-18 | 93 |
bone marrow | 2.31e-16 | 76 |
bone element | 2.64e-14 | 82 |
skeletal element | 5.07e-12 | 90 |
mesoderm | 1.16e-11 | 315 |
mesoderm-derived structure | 1.16e-11 | 315 |
presumptive mesoderm | 1.16e-11 | 315 |
circulatory system | 9.31e-11 | 112 |
cardiovascular system | 1.15e-10 | 109 |
skeletal system | 9.82e-10 | 100 |
musculoskeletal system | 5.07e-09 | 167 |
omentum | 2.78e-08 | 6 |
peritoneum | 2.78e-08 | 6 |
abdominal cavity | 2.78e-08 | 6 |
visceral peritoneum | 2.78e-08 | 6 |
blood | 4.41e-07 | 15 |
haemolymphatic fluid | 4.41e-07 | 15 |
organism substance | 4.41e-07 | 15 |